BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.5343.p         (159 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003777606.1| transcription regulator protein [Herbaspiril...   222   2e-56
ref|YP_002894292.1| addiction module antidote protein [Tolumonas...    95   4e-18
gb|EAY56675.1| probable transcriptional regulator [Leptospirillu...    94   5e-18
gb|EAY56427.1| conserved protein of unknown function [Leptospiri...    94   6e-18
ref|YP_004711477.1| putative transcriptional regulator [Eggerthe...    94   7e-18

>ref|YP_003777606.1| transcription regulator protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ65698.1| transcription regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 159

 Score =  222 bits (565), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 159/159 (100%), Positives = 159/159 (100%)

Query: 1   MTARKFSTKDLQVSAFDPVTYLDSDEAIAAYLEIALAENDPVFLMAALNDVIRARGVADI 60
           MTARKFSTKDLQVSAFDPVTYLDSDEAIAAYLEIALAENDPVFLMAALNDVIRARGVADI
Sbjct: 1   MTARKFSTKDLQVSAFDPVTYLDSDEAIAAYLEIALAENDPVFLMAALNDVIRARGVADI 60

Query: 61  ASKAGLGRESLYKTLKPGAHPRLSTVLQLLGALDIRLSITPAKSARTAKKTASKKSAATK 120
           ASKAGLGRESLYKTLKPGAHPRLSTVLQLLGALDIRLSITPAKSARTAKKTASKKSAATK
Sbjct: 61  ASKAGLGRESLYKTLKPGAHPRLSTVLQLLGALDIRLSITPAKSARTAKKTASKKSAATK 120

Query: 121 RARMTSTPGRPVQAKMAPKPPVTTKRTTKTAATRSRLPG 159
           RARMTSTPGRPVQAKMAPKPPVTTKRTTKTAATRSRLPG
Sbjct: 121 RARMTSTPGRPVQAKMAPKPPVTTKRTTKTAATRSRLPG 159


>ref|YP_002894292.1| addiction module antidote protein [Tolumonas auensis DSM 9187]
 gb|ACQ94706.1| addiction module antidote protein [Tolumonas auensis DSM 9187]
          Length = 94

 Score = 94.7 bits (234), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 50/91 (54%), Positives = 66/91 (72%)

Query: 9  KDLQVSAFDPVTYLDSDEAIAAYLEIALAENDPVFLMAALNDVIRARGVADIASKAGLGR 68
          K + +S+FD   YLDS+EAIA YL   L E+DP   + AL DV +ARG++ IA + GLGR
Sbjct: 2  KKVTLSSFDAADYLDSEEAIAEYLNAILEEDDPALFLTALGDVAKARGMSQIAVQTGLGR 61

Query: 69 ESLYKTLKPGAHPRLSTVLQLLGALDIRLSI 99
          ESLYKT  PGAHPR  TV+++L AL ++L+I
Sbjct: 62 ESLYKTFAPGAHPRYETVVKVLKALGVKLTI 92


>gb|EAY56675.1| probable transcriptional regulator [Leptospirillum rubarum]
          Length = 93

 Score = 94.4 bits (233), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 48/88 (54%), Positives = 68/88 (77%)

Query: 12 QVSAFDPVTYLDSDEAIAAYLEIALAENDPVFLMAALNDVIRARGVADIASKAGLGRESL 71
          +++ FDP  YLDS++ IA YL I L ENDP  L+AAL++V +ARG+A IA  +GLGRESL
Sbjct: 4  KITDFDPAAYLDSEQTIAEYLTITLEENDPDLLLAALSNVAKARGMAKIAKDSGLGRESL 63

Query: 72 YKTLKPGAHPRLSTVLQLLGALDIRLSI 99
          YK LKPG+ PR  T+++++ AL I+L++
Sbjct: 64 YKALKPGSKPRFETIMKVMQALGIKLTV 91


>gb|EAY56427.1| conserved protein of unknown function [Leptospirillum rubarum]
 gb|EDZ40229.1| Conserved hypothetical protein [Leptospirillum sp. Group II
          '5-way CG']
          Length = 93

 Score = 94.0 bits (232), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 48/88 (54%), Positives = 66/88 (75%)

Query: 12 QVSAFDPVTYLDSDEAIAAYLEIALAENDPVFLMAALNDVIRARGVADIASKAGLGRESL 71
          +++ FDP  YLDS+E IA YL   L ENDP  L++AL+DV RARG+A IA  +GLGRESL
Sbjct: 4  KITDFDPAAYLDSEETIAEYLTAILEENDPDLLLSALSDVARARGMAQIAKDSGLGRESL 63

Query: 72 YKTLKPGAHPRLSTVLQLLGALDIRLSI 99
          YK L PGA PR  T+++++ AL ++L++
Sbjct: 64 YKALAPGAKPRFETIMKVMHALGVKLTV 91


>ref|YP_004711477.1| putative transcriptional regulator [Eggerthella sp. YY7918]
 dbj|BAK45076.1| predicted transcriptional regulator [Eggerthella sp. YY7918]
          Length = 101

 Score = 94.0 bits (232), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 48/93 (51%), Positives = 66/93 (70%)

Query: 9   KDLQVSAFDPVTYLDSDEAIAAYLEIALAENDPVFLMAALNDVIRARGVADIASKAGLGR 68
           K +++S F    YLDS+E IAA+L  AL ENDP F   AL +V RARG+A +A KAG+GR
Sbjct: 7   KSIEISEFHAYDYLDSNETIAAFLSAALEENDPEFFQKALGEVARARGMAAVAQKAGVGR 66

Query: 69  ESLYKTLKPGAHPRLSTVLQLLGALDIRLSITP 101
           ESLYK+L    +PR +T++ +L AL  +L++TP
Sbjct: 67  ESLYKSLSAEGNPRFATIMDVLDALGFKLTVTP 99