BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5342.p (284 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777604.1| chemoreceptor glutamine deamidase [Herbaspir... 397 e-108 ref|YP_003775429.1| chemotaxis protein [Herbaspirillum seropedic... 309 3e-82 ref|ZP_08274888.1| Chemotaxis protein CheD [Oxalobacteraceae bac... 300 2e-79 ref|YP_001099604.1| chemoreceptor glutamine deamidase CheD [Herm... 296 3e-78 ref|YP_001353782.1| chemoreceptor glutamine deamidase CheD [Jant... 293 2e-77 >ref|YP_003777604.1| chemoreceptor glutamine deamidase [Herbaspirillum seropedicae SmR1] gb|ADJ65696.1| chemoreceptor glutamine deamidase protein [Herbaspirillum seropedicae SmR1] Length = 203 Score = 397 bits (1020), Expect = e-108, Method: Composition-based stats. Identities = 192/203 (94%), Positives = 199/203 (98%) Query: 82 MQTVINKPENFASYRYHDRAFNCDTAKILPGEYFYTGEDMMIVTVLGSCVSACLRDRVSG 141 MQTV+NKPENFASY YHDRAF+C TAKILPGEYFYTGEDMMIVTVLGSCVSACLRDRVSG Sbjct: 1 MQTVVNKPENFASYVYHDRAFDCATAKILPGEYFYTGEDMMIVTVLGSCVSACLRDRVSG 60 Query: 142 VGGMNHFMLPDGGGEADSPVSASMRYGTYAMEVLINDVLKAGARRENLECKVFGGGAVLR 201 VGGMNHFMLPDGGGEADSPVSASMRYGTYAMEVLINDVLKAGARRENLECKVFGGGAVLR Sbjct: 61 VGGMNHFMLPDGGGEADSPVSASMRYGTYAMEVLINDVLKAGARRENLECKVFGGGAVLR 120 Query: 202 GMNAMNVGERNAAFVKNYLSAEKIRVVAEDLNDIWPRKVHFFPRTGKVLVKKIKDAAADL 261 GMNAMNVGERNAAFV+++LSAEKIRVVAEDLNDIWPRKVHFFPRTGKVLVKKIK+A ADL Sbjct: 121 GMNAMNVGERNAAFVRSFLSAEKIRVVAEDLNDIWPRKVHFFPRTGKVLVKKIKEAGADL 180 Query: 262 ASREREYASKLQAKPVGGEIDLF 284 SREREYAS+LQAKPVGGEIDLF Sbjct: 181 TSREREYASRLQAKPVGGEIDLF 203 >ref|YP_003775429.1| chemotaxis protein [Herbaspirillum seropedicae SmR1] gb|ADJ63521.1| chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 201 Score = 309 bits (792), Expect = 3e-82, Method: Composition-based stats. Identities = 151/196 (77%), Positives = 169/196 (86%), Gaps = 1/196 (0%) Query: 90 ENFASYRYHDRAFNCDTAKILPGEYFYTGEDMMIVTVLGSCVSACLRDRVSGVGGMNHFM 149 E AS Y+DR F+CD AKILPGEY++T +DMMIVTVLGSCVSAC+RDRVSG+GGMNHFM Sbjct: 6 EQIASNLYYDRTFDCDAAKILPGEYYFTTKDMMIVTVLGSCVSACIRDRVSGIGGMNHFM 65 Query: 150 LPDGGGEADSPVSASMRYGTYAMEVLINDVLKAGARRENLECKVFGGGAVLRGMNAMNVG 209 LPDGGG+ SPVSAS RYGTYAMEVLINDVLK+GARRENLE KVFGGG VLRG +A+NVG Sbjct: 66 LPDGGGDDGSPVSASARYGTYAMEVLINDVLKSGARRENLEAKVFGGGNVLRGFSAINVG 125 Query: 210 ERNAAFVKNYLSAEKIRVVAEDLNDIWPRKVHFFPRTGKVLVKKIKDAAAD-LASREREY 268 ERNA FV+ YL AE IRVVAEDLNDI+PRKV+FFPRTGKVLVKK+K + L RE+ Y Sbjct: 126 ERNAEFVRRYLKAENIRVVAEDLNDIYPRKVYFFPRTGKVLVKKLKQMHNNTLVDREKAY 185 Query: 269 ASKLQAKPVGGEIDLF 284 ASKL KPVGGE+DLF Sbjct: 186 ASKLVTKPVGGEVDLF 201 >ref|ZP_08274888.1| Chemotaxis protein CheD [Oxalobacteraceae bacterium IMCC9480] gb|EGF31639.1| Chemotaxis protein CheD [Oxalobacteraceae bacterium IMCC9480] Length = 202 Score = 300 bits (768), Expect = 2e-79, Method: Composition-based stats. Identities = 142/196 (72%), Positives = 169/196 (86%), Gaps = 1/196 (0%) Query: 90 ENFASYRYHDRAFNCDTAKILPGEYFYTGEDMMIVTVLGSCVSACLRDRVSGVGGMNHFM 149 E FA+ Y+DR F+CD AKILPGEYF+T +DM+IVTVLGSCVSAC+RDRVSG+GGMNHFM Sbjct: 7 EQFATNVYYDRTFDCDAAKILPGEYFFTPKDMLIVTVLGSCVSACIRDRVSGIGGMNHFM 66 Query: 150 LPDGGGEADSPVSASMRYGTYAMEVLINDVLKAGARRENLECKVFGGGAVLRGMNAMNVG 209 LP GG + DSPVSASMRYGTYAMEVLIN++LKAGARRENLE KVFGGG VLRG A+NVG Sbjct: 67 LPYGGTDIDSPVSASMRYGTYAMEVLINELLKAGARRENLEAKVFGGGNVLRGFIAINVG 126 Query: 210 ERNAAFVKNYLSAEKIRVVAEDLNDIWPRKVHFFPRTGKVLVKKIKDAAAD-LASREREY 268 ERNA FV+ YL E IRV+AEDLNDI PRKV++FPR+GKVLVKK+K + L +RE++Y Sbjct: 127 ERNAQFVREYLKMENIRVIAEDLNDIHPRKVYYFPRSGKVLVKKLKQLNNNTLVNREQDY 186 Query: 269 ASKLQAKPVGGEIDLF 284 A++LQ+ PV G++DLF Sbjct: 187 ATRLQSAPVSGDVDLF 202 >ref|YP_001099604.1| chemoreceptor glutamine deamidase CheD [Herminiimonas arsenicoxydans] sp|A4G4P0|CHED_HERAR RecName: Full=Probable chemoreceptor glutamine deamidase CheD emb|CAL61477.1| Chemotaxis protein CheD [Herminiimonas arsenicoxydans] Length = 203 Score = 296 bits (757), Expect = 3e-78, Method: Composition-based stats. Identities = 141/196 (71%), Positives = 171/196 (87%), Gaps = 1/196 (0%) Query: 90 ENFASYRYHDRAFNCDTAKILPGEYFYTGEDMMIVTVLGSCVSACLRDRVSGVGGMNHFM 149 E+FA+ Y+DR F+ D AKILPGEY+YTG+DM+IVTVLGSCVSAC+RDRV+GVGGMNHFM Sbjct: 7 EHFATNVYYDRTFDRDAAKILPGEYYYTGKDMLIVTVLGSCVSACIRDRVTGVGGMNHFM 66 Query: 150 LPDGGGEADSPVSASMRYGTYAMEVLINDVLKAGARRENLECKVFGGGAVLRGMNAMNVG 209 LPD G +ADSPVSAS RYGTYAMEVLIND+LKAGA+RENLE KVFGGGAVLRG AMNVG Sbjct: 67 LPDSGADADSPVSASARYGTYAMEVLINDLLKAGAKRENLEAKVFGGGAVLRGFIAMNVG 126 Query: 210 ERNAAFVKNYLSAEKIRVVAEDLNDIWPRKVHFFPRTGKVLVKKIKDAAAD-LASREREY 268 ERNA FV+++L E IR++AEDLNDI PRKV++FPR+GKVLVKK+K + L +RE++Y Sbjct: 127 ERNAQFVRDFLKVEGIRIIAEDLNDIHPRKVYYFPRSGKVLVKKLKQLNNNTLVNREQDY 186 Query: 269 ASKLQAKPVGGEIDLF 284 A++LQ+ V G+I+LF Sbjct: 187 ANRLQSNNVAGDIELF 202 >ref|YP_001353782.1| chemoreceptor glutamine deamidase CheD [Janthinobacterium sp. Marseille] sp|A6SZT5|CHED_JANMA RecName: Full=Probable chemoreceptor glutamine deamidase CheD gb|ABR88351.1| chemotaxis protein [Janthinobacterium sp. Marseille] Length = 203 Score = 293 bits (750), Expect = 2e-77, Method: Composition-based stats. Identities = 137/196 (69%), Positives = 171/196 (87%), Gaps = 1/196 (0%) Query: 90 ENFASYRYHDRAFNCDTAKILPGEYFYTGEDMMIVTVLGSCVSACLRDRVSGVGGMNHFM 149 E+FA+ Y+DR F+ D AKILPGEY+YTG+DM+IVTVLGSCVSAC+RDRV+GVGGMNHFM Sbjct: 7 EHFATNVYYDRTFDRDAAKILPGEYYYTGKDMLIVTVLGSCVSACIRDRVTGVGGMNHFM 66 Query: 150 LPDGGGEADSPVSASMRYGTYAMEVLINDVLKAGARRENLECKVFGGGAVLRGMNAMNVG 209 LPDGGG+ADSP+SAS RYGTYAME+LIND+LKAGARRENLE KVFGGG VL G +++NVG Sbjct: 67 LPDGGGDADSPISASARYGTYAMEILINDLLKAGARRENLEAKVFGGGNVLSGFSSINVG 126 Query: 210 ERNAAFVKNYLSAEKIRVVAEDLNDIWPRKVHFFPRTGKVLVKKIKDAAAD-LASREREY 268 ERNA FV+N+L E IR+VAEDLND+ PRKV++FPR GKVLVKK++ + L +RE++Y Sbjct: 127 ERNAQFVRNFLKVENIRIVAEDLNDVHPRKVYYFPRNGKVLVKKLRQLNNNTLVNREQDY 186 Query: 269 ASKLQAKPVGGEIDLF 284 A++LQ+ V G+++LF Sbjct: 187 ANRLQSGSVSGDVELF 202