BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5341.p (549 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777602.1| malate:quinone oxidoreductase [Herbaspirillu... 1029 0.0 gb|ACT32399.1| malate:quinone oxidoreductase [Pseudomonas fluore... 893 0.0 ref|YP_004353967.1| malate dehydrogenase [Pseudomonas brassicace... 890 0.0 ref|YP_259534.1| malate:quinone oxidoreductase [Pseudomonas fluo... 889 0.0 ref|ZP_07774183.1| malate:quinone oxidoreductase [Pseudomonas fl... 876 0.0 >ref|YP_003777602.1| malate:quinone oxidoreductase [Herbaspirillum seropedicae SmR1] gb|ADJ65694.1| malate:quinone oxidoreductase protein [Herbaspirillum seropedicae SmR1] Length = 549 Score = 1029 bits (2660), Expect = 0.0, Method: Composition-based stats. Identities = 517/549 (94%), Positives = 530/549 (96%) Query: 1 MLKKSFLALLGFVVALVVTPASQAADVKKVDVLLVGGGIMSTTLAVWLNELEPGWSMEMV 60 MLKK+FLALLGFVVAL PASQAADVKKVDVLLVGGGIMSTTLAVWLNELEPGWSMEM+ Sbjct: 1 MLKKTFLALLGFVVALATAPASQAADVKKVDVLLVGGGIMSTTLAVWLNELEPGWSMEMI 60 Query: 61 ERLDGVAEESSNGWNNAGTGHSALAELNYTPEDKDGKIQIAKAIEINEAFQISRQFWSWQ 120 ERLDGVAEESSNGWNNAGTGHSALAELNYTPEDKDGKIQIAKAIEINEAFQISRQFWSWQ Sbjct: 61 ERLDGVAEESSNGWNNAGTGHSALAELNYTPEDKDGKIQIAKAIEINEAFQISRQFWSWQ 120 Query: 121 VKSGVLKNPRSFINSTPHMSFIWGDDNVAYLKKRYEALQASPLFAGMQYSEDHEQIKKWV 180 VKSGVLKNPRSFIN+TPHMSFIWGDDNV YLKKRY+ALQASPLFAGMQYSEDHEQIKKWV Sbjct: 121 VKSGVLKNPRSFINTTPHMSFIWGDDNVTYLKKRYQALQASPLFAGMQYSEDHEQIKKWV 180 Query: 181 PLMMEGRDPNQKLAATWTPLGTDVNFGEITRQFAAYLQTRPNFGLKLSSEVRDITRNGDG 240 PLMMEGRDP QKLAATWTPLGTDVNFGEITRQFAAYLQ RPNF LKLSSEVRDITRN DG Sbjct: 181 PLMMEGRDPQQKLAATWTPLGTDVNFGEITRQFAAYLQARPNFALKLSSEVRDITRNADG 240 Query: 241 TWRVVYKNLKDGSTTETDAKFVFIGAGGGALKLLQKSGIPEARDYAAFPVGGSFLITDNQ 300 TWR+ YKNLKDGSTTETDAKFVFIGAGGGALKLLQKSGIPEARDYAAFPVGGSFLITDN Sbjct: 241 TWRIGYKNLKDGSTTETDAKFVFIGAGGGALKLLQKSGIPEARDYAAFPVGGSFLITDNP 300 Query: 301 DIALRHLAKAYGKASVGAPPMSVPHLDTRVLDGKRVILFGPFATFSTKFLKQGSLWDLFS 360 IA RHLAKAYGKASVGAPPMSVPHLDTRVLDGKRVILFGPFATFSTKFLKQGSLWDLFS Sbjct: 301 AIAERHLAKAYGKASVGAPPMSVPHLDTRVLDGKRVILFGPFATFSTKFLKQGSLWDLFS 360 Query: 361 ATTTHNVWPMARVGIDEYPLVEYLAGQLMQSDDQRFAALKEYFPNAKKEDWRLWQAGQRV 420 ATTTHNVWPMARVGIDEYPLVEYLAGQLM SDD+RFAALKEYFPNAKKEDWRLWQAGQRV Sbjct: 361 ATTTHNVWPMARVGIDEYPLVEYLAGQLMLSDDERFAALKEYFPNAKKEDWRLWQAGQRV 420 Query: 421 QIIKRDEAKGGVLKLGTEIVASADGSIAGLLGASPGASTAAPIMLTVLQKVFKDKLATPE 480 QIIKRD+ KGGVLKLGTEIVASADGS+AGLLGASPGASTAAPIML+VLQKVFKDKLATPE Sbjct: 421 QIIKRDDVKGGVLKLGTEIVASADGSMAGLLGASPGASTAAPIMLSVLQKVFKDKLATPE 480 Query: 481 WQQKVRQIVPSYGTKLNDHPDQVAKEWAYTADVLQLMPPPVIAPKAAGQNGKGGSMEKPK 540 WQQKVRQIVPSYGTKLNDHPDQVAKEWAYT++VLQL PPPVIAPKA G++ GSMEKPK Sbjct: 481 WQQKVRQIVPSYGTKLNDHPDQVAKEWAYTSEVLQLAPPPVIAPKATGKDAAKGSMEKPK 540 Query: 541 ANASADMAL 549 ANASADMAL Sbjct: 541 ANASADMAL 549 >gb|ACT32399.1| malate:quinone oxidoreductase [Pseudomonas fluorescens] Length = 547 Score = 893 bits (2307), Expect = 0.0, Method: Composition-based stats. Identities = 446/550 (81%), Positives = 497/550 (90%), Gaps = 4/550 (0%) Query: 1 MLKKSFLALLGFVVALVVTPASQAADVKKVDVLLVGGGIMSTTLAVWLNELEPGWSMEMV 60 MLKK+ ALLG +A+ + + AA+ KKVDVLL+GGGIMS+TL VWLNELEPGW+MEMV Sbjct: 1 MLKKTHTALLGLAMAMGLA-TTHAAEPKKVDVLLIGGGIMSSTLGVWLNELEPGWTMEMV 59 Query: 61 ERLDGVAEESSNGWNNAGTGHSALAELNYTPEDKDGKIQIAKAIEINEAFQISRQFWSWQ 120 ERLDGVAEESSNGWNNAGTGHSALAELNYTPEDK+GK++I KA+EINEAFQISRQFWSWQ Sbjct: 60 ERLDGVAEESSNGWNNAGTGHSALAELNYTPEDKNGKVEIVKAVEINEAFQISRQFWSWQ 119 Query: 121 VKSGVLKNPRSFINSTPHMSFIWGDDNVAYLKKRYEALQASPLFAGMQYSEDHEQIKKWV 180 VK+GVLKNPRSFINSTPHMSF+WGDDN+A+LKKRYEALQASPLFAGMQYSED EQI KWV Sbjct: 120 VKNGVLKNPRSFINSTPHMSFVWGDDNIAFLKKRYEALQASPLFAGMQYSEDREQISKWV 179 Query: 181 PLMMEGRDPNQKLAATWTPLGTDVNFGEITRQFAAYLQTRPNFGLKLSSEVRDITRNGDG 240 PLMM+GRDP+QK+AATW+PLGTDVNFGEITRQFAAYLQT+PNF LKLSSEV +ITRN DG Sbjct: 180 PLMMQGRDPSQKVAATWSPLGTDVNFGEITRQFAAYLQTKPNFSLKLSSEVEEITRNEDG 239 Query: 241 TWRVVYKNLKDGSTTETDAKFVFIGAGGGALKLLQKSGIPEARDYAAFPVGGSFLITDNQ 300 TWRV YKNLKDG+ TETDAKFVFIGAGGGAL LLQKS IPEAR+YA FPVGGSFL+T+N Sbjct: 240 TWRVSYKNLKDGTETETDAKFVFIGAGGGALHLLQKSDIPEAREYAGFPVGGSFLVTENP 299 Query: 301 DIALRHLAKAYGKASVGAPPMSVPHLDTRVLDGKRVILFGPFATFSTKFLKQGSLWDLFS 360 +A HLAKAYGKASVGAPPMSVPHLDTRVLDGKRVILFGPFATFSTKFLK GS +DL + Sbjct: 300 TVAQLHLAKAYGKASVGAPPMSVPHLDTRVLDGKRVILFGPFATFSTKFLKNGSYFDLLT 359 Query: 361 ATTTHNVWPMARVGIDEYPLVEYLAGQLMQSDDQRFAALKEYFPNAKKEDWRLWQAGQRV 420 +TTTHNVWPM +VGI++YPLVEYLAGQLM SD+ RF ALKEYFP AK+EDWRLWQAGQRV Sbjct: 360 STTTHNVWPMTKVGIEQYPLVEYLAGQLMLSDEDRFNALKEYFPEAKQEDWRLWQAGQRV 419 Query: 421 QIIKRDEAKGGVLKLGTEIVASADGSIAGLLGASPGASTAAPIMLTVLQKVFKDKLATPE 480 QIIKRDE KGGVLKLGTE+VAS DGSIAGLLGASPGASTAAPIMLTVL+KVFKDK+A+P Sbjct: 420 QIIKRDEEKGGVLKLGTEVVASQDGSIAGLLGASPGASTAAPIMLTVLEKVFKDKVASPA 479 Query: 481 WQQKVRQIVPSYGTKLNDHPDQVAKEWAYTADVLQLMPPPVIA-PKAAGQNGKGGSMEKP 539 WQ+K+RQIVPSYGTKLN+ P++VA+EWAYT++VLQL PPP I P A K G+ P Sbjct: 480 WQEKLRQIVPSYGTKLNESPERVAQEWAYTSEVLQLDPPPAIGKPAANVAPAKPGA--AP 537 Query: 540 KANASADMAL 549 +AN +ADMAL Sbjct: 538 QANPAADMAL 547 >ref|YP_004353967.1| malate dehydrogenase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gb|AEA68963.1| Malate dehydrogenase (acceptor)(malate:quinone oxidoreductase) [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 547 Score = 890 bits (2301), Expect = 0.0, Method: Composition-based stats. Identities = 444/549 (80%), Positives = 491/549 (89%), Gaps = 2/549 (0%) Query: 1 MLKKSFLALLGFVVALVVTPASQAADVKKVDVLLVGGGIMSTTLAVWLNELEPGWSMEMV 60 MLKK+ ALLG +A+ + + AA+ KKVDVLL+GGGIMS+TL VWLNELEPGW+MEMV Sbjct: 1 MLKKTHTALLGLAMAMGLA-TTHAAEPKKVDVLLIGGGIMSSTLGVWLNELEPGWTMEMV 59 Query: 61 ERLDGVAEESSNGWNNAGTGHSALAELNYTPEDKDGKIQIAKAIEINEAFQISRQFWSWQ 120 ERLDGVAEESSNGWNNAGTGHSALAELNYTPEDK+GK+ I+KAIEINEAFQISRQFWSWQ Sbjct: 60 ERLDGVAEESSNGWNNAGTGHSALAELNYTPEDKNGKVDISKAIEINEAFQISRQFWSWQ 119 Query: 121 VKSGVLKNPRSFINSTPHMSFIWGDDNVAYLKKRYEALQASPLFAGMQYSEDHEQIKKWV 180 VK+GVLKNPRSFINSTPHMSF+WGD+N+A+LKKRYEALQASPLFAGMQYSED EQI KWV Sbjct: 120 VKNGVLKNPRSFINSTPHMSFLWGDENIAFLKKRYEALQASPLFAGMQYSEDREQISKWV 179 Query: 181 PLMMEGRDPNQKLAATWTPLGTDVNFGEITRQFAAYLQTRPNFGLKLSSEVRDITRNGDG 240 PLMM+GRDP+QK+AATW+PLGTDVNFGEITRQFAAYLQT+PNF LKLSSEV DITRN DG Sbjct: 180 PLMMQGRDPSQKVAATWSPLGTDVNFGEITRQFAAYLQTKPNFSLKLSSEVEDITRNEDG 239 Query: 241 TWRVVYKNLKDGSTTETDAKFVFIGAGGGALKLLQKSGIPEARDYAAFPVGGSFLITDNQ 300 TWRV YKNLKDG+ TETDAKFVFIGAGGGAL LLQKS IPEAR+YA FPVGGSFL+T+N Sbjct: 240 TWRVSYKNLKDGTETETDAKFVFIGAGGGALHLLQKSDIPEAREYAGFPVGGSFLVTENP 299 Query: 301 DIALRHLAKAYGKASVGAPPMSVPHLDTRVLDGKRVILFGPFATFSTKFLKQGSLWDLFS 360 +A HLAKAYGKASVGAPPMSVPHLDTRVLDGKRVILFGPFATFSTKFLK GS +DL + Sbjct: 300 TVAQLHLAKAYGKASVGAPPMSVPHLDTRVLDGKRVILFGPFATFSTKFLKNGSYFDLLT 359 Query: 361 ATTTHNVWPMARVGIDEYPLVEYLAGQLMQSDDQRFAALKEYFPNAKKEDWRLWQAGQRV 420 +TTTHNVWPM +VGI++YPLVEYLAGQLM SD+ RF ALKEYFP AK+EDWRLWQAGQRV Sbjct: 360 STTTHNVWPMTKVGIEQYPLVEYLAGQLMLSDEDRFNALKEYFPEAKQEDWRLWQAGQRV 419 Query: 421 QIIKRDEAKGGVLKLGTEIVASADGSIAGLLGASPGASTAAPIMLTVLQKVFKDKLATPE 480 QIIKRDE KGGVLKLGTE+VAS DGSIAGLLGASPGASTAAPIMLTVL+KVFKDK+A+P Sbjct: 420 QIIKRDEEKGGVLKLGTEVVASQDGSIAGLLGASPGASTAAPIMLTVLEKVFKDKVASPA 479 Query: 481 WQQKVRQIVPSYGTKLNDHPDQVAKEWAYTADVLQLMPPPVIAPKAAGQNGKGGSMEKPK 540 WQ+K+ QIVPSYGTKLND P++VA+EWAYT+DVLQL PPP I K + Sbjct: 480 WQEKLHQIVPSYGTKLNDSPERVAQEWAYTSDVLQLDPPPAIG-KPGATAAPAKPAAPRE 538 Query: 541 ANASADMAL 549 AN +ADMAL Sbjct: 539 ANPAADMAL 547 >ref|YP_259534.1| malate:quinone oxidoreductase [Pseudomonas fluorescens Pf-5] gb|AAY91700.1| malate:quinone-oxidoreductase [Pseudomonas fluorescens Pf-5] Length = 545 Score = 889 bits (2297), Expect = 0.0, Method: Composition-based stats. Identities = 446/552 (80%), Positives = 495/552 (89%), Gaps = 10/552 (1%) Query: 1 MLKKSFLALLGFVVALVVTPASQAADVKKVDVLLVGGGIMSTTLAVWLNELEPGWSMEMV 60 M KK AL+G +++ +T A AA+ KKVDVLL+GGGIMS+TL VWLNEL+P WSMEMV Sbjct: 1 MFKKVNTALIGLAMSIGLTTA-HAAEPKKVDVLLIGGGIMSSTLGVWLNELQPDWSMEMV 59 Query: 61 ERLDGVAEESSNGWNNAGTGHSALAELNYTPEDKDGKIQIAKAIEINEAFQISRQFWSWQ 120 ERLDGVAEESSNGWNNAGTGHSALAELNYTPE KDGKI+IAKAIEINEAFQISRQFWSWQ Sbjct: 60 ERLDGVAEESSNGWNNAGTGHSALAELNYTPEGKDGKIEIAKAIEINEAFQISRQFWSWQ 119 Query: 121 VKSGVLKNPRSFINSTPHMSFIWGDDNVAYLKKRYEALQASPLFAGMQYSEDHEQIKKWV 180 VK+GVLKNPRSFINSTPHMSF+WGDDN+ +LK RYEALQASPLF+GMQYSED EQIKKWV Sbjct: 120 VKNGVLKNPRSFINSTPHMSFVWGDDNIKFLKARYEALQASPLFSGMQYSEDAEQIKKWV 179 Query: 181 PLMMEGRDPNQKLAATWTPLGTDVNFGEITRQFAAYLQTRPNFGLKLSSEVRDITRNGDG 240 PLMMEGRDP QK+AATWTP+GTDVNFGEITRQF A+LQ +PNF LKLSSEV++I RN DG Sbjct: 180 PLMMEGRDPAQKIAATWTPIGTDVNFGEITRQFVAHLQAQPNFALKLSSEVQEIERNKDG 239 Query: 241 TWRVVYKNLKDGSTTETDAKFVFIGAGGGALKLLQKSGIPEARDYAAFPVGGSFLITDNQ 300 +WRV YKNLKDGS TETDAKFVFIGAGGGAL LLQKSGIPEA +YA FPVGGSFL+TDN Sbjct: 240 SWRVTYKNLKDGSKTETDAKFVFIGAGGGALHLLQKSGIPEANEYAGFPVGGSFLVTDNA 299 Query: 301 DIALRHLAKAYGKASVGAPPMSVPHLDTRVLDGKRVILFGPFATFSTKFLKQGSLWDLFS 360 +A +HLAKAYGKASVGAPPMSVPHLDTRVLDGKRVILFGPFATFSTKFLK+GS +DL + Sbjct: 300 SVAEQHLAKAYGKASVGAPPMSVPHLDTRVLDGKRVILFGPFATFSTKFLKEGSYFDLLT 359 Query: 361 ATTTHNVWPMARVGIDEYPLVEYLAGQLMQSDDQRFAALKEYFPNAKKEDWRLWQAGQRV 420 +TTTHN WPM +VGI++YPLVEYLAGQLM SDD RFAALKEYFPNAK+EDWRLWQAGQRV Sbjct: 360 STTTHNFWPMTKVGIEQYPLVEYLAGQLMLSDDDRFAALKEYFPNAKQEDWRLWQAGQRV 419 Query: 421 QIIKRDEAKGGVLKLGTEIVASADGSIAGLLGASPGASTAAPIMLTVLQKVFKDKLATPE 480 QIIKRDE KGGVLKLGTEIVAS DGSIAGLLGASPGASTAAPIML+VLQKVFKD++ATP Sbjct: 420 QIIKRDEEKGGVLKLGTEIVASEDGSIAGLLGASPGASTAAPIMLSVLQKVFKDQVATPA 479 Query: 481 WQQKVRQIVPSYGTKLNDHPDQVAKEWAYTADVLQLMPPPVI---APKAAGQNGKGGSME 537 WQ+K++QIVPSYGT LND P++VAKEWAYTA+VLQL PPP + AP+A S+ Sbjct: 480 WQEKLKQIVPSYGTALNDSPERVAKEWAYTAEVLQLTPPPPVKGAAPQAP------ASLA 533 Query: 538 KPKANASADMAL 549 KP++N +ADMAL Sbjct: 534 KPESNPAADMAL 545 >ref|ZP_07774183.1| malate:quinone oxidoreductase [Pseudomonas fluorescens WH6] gb|EFQ64947.1| malate:quinone oxidoreductase [Pseudomonas fluorescens WH6] Length = 548 Score = 876 bits (2264), Expect = 0.0, Method: Composition-based stats. Identities = 436/549 (79%), Positives = 483/549 (87%), Gaps = 1/549 (0%) Query: 1 MLKKSFLALLGFVVALVVTPASQAADVKKVDVLLVGGGIMSTTLAVWLNELEPGWSMEMV 60 M KK ALLG +++ V+ A + KKVDVLL+GGGIMS TL VWLNELEP WSMEMV Sbjct: 1 MFKKVNTALLGLALSMGVSTV-HAQEAKKVDVLLIGGGIMSATLGVWLNELEPDWSMEMV 59 Query: 61 ERLDGVAEESSNGWNNAGTGHSALAELNYTPEDKDGKIQIAKAIEINEAFQISRQFWSWQ 120 ERLDGVAEESSNGWNNAGTGHSALAELNYTPEDK+G ++I KA+EINEAFQISRQFWSWQ Sbjct: 60 ERLDGVAEESSNGWNNAGTGHSALAELNYTPEDKNGNVEIPKAVEINEAFQISRQFWSWQ 119 Query: 121 VKSGVLKNPRSFINSTPHMSFIWGDDNVAYLKKRYEALQASPLFAGMQYSEDHEQIKKWV 180 V+ GVLKNPRSFINSTPHMSF+WGDDN+ +LKKRYEALQASPLFAGMQYSED QI KWV Sbjct: 120 VQQGVLKNPRSFINSTPHMSFVWGDDNIKFLKKRYEALQASPLFAGMQYSEDPAQIAKWV 179 Query: 181 PLMMEGRDPNQKLAATWTPLGTDVNFGEITRQFAAYLQTRPNFGLKLSSEVRDITRNGDG 240 PLMMEGRDPNQK+AATW+PLGTD+NFGEITRQF A+LQT P F LKLSSEV+DIT+N DG Sbjct: 180 PLMMEGRDPNQKIAATWSPLGTDMNFGEITRQFVAHLQTTPKFDLKLSSEVQDITKNDDG 239 Query: 241 TWRVVYKNLKDGSTTETDAKFVFIGAGGGALKLLQKSGIPEARDYAAFPVGGSFLITDNQ 300 +WRV YKNLKDG+ TETDAKFVFIGAGGGAL LLQKSGIPEA++YA FPVGGSFL+TDN Sbjct: 240 SWRVSYKNLKDGTKTETDAKFVFIGAGGGALHLLQKSGIPEAKEYAGFPVGGSFLVTDNP 299 Query: 301 DIALRHLAKAYGKASVGAPPMSVPHLDTRVLDGKRVILFGPFATFSTKFLKQGSLWDLFS 360 +A +HLAKAYGKASVG+PPMSVPHLDTRVLDGKRVILFGPFATFSTKFLK+GS DL + Sbjct: 300 TVAEQHLAKAYGKASVGSPPMSVPHLDTRVLDGKRVILFGPFATFSTKFLKEGSYLDLLT 359 Query: 361 ATTTHNVWPMARVGIDEYPLVEYLAGQLMQSDDQRFAALKEYFPNAKKEDWRLWQAGQRV 420 +TTTHN+WPM +VGI EYPLVEYLAGQLM SDD RF AL+EYFPNAKKEDWRLWQAGQRV Sbjct: 360 STTTHNIWPMTKVGIREYPLVEYLAGQLMLSDDDRFKALQEYFPNAKKEDWRLWQAGQRV 419 Query: 421 QIIKRDEAKGGVLKLGTEIVASADGSIAGLLGASPGASTAAPIMLTVLQKVFKDKLATPE 480 QIIKRDE +GGVLKLGTE+V+SAD +IAGLLGASPGASTAAPIMLTVLQKVFKDK+ATPE Sbjct: 420 QIIKRDEEQGGVLKLGTEVVSSADNTIAGLLGASPGASTAAPIMLTVLQKVFKDKVATPE 479 Query: 481 WQQKVRQIVPSYGTKLNDHPDQVAKEWAYTADVLQLMPPPVIAPKAAGQNGKGGSMEKPK 540 WQ K+ QIVPSYGTKLND P+ VAKEWAYTA VLQLMPPPVI AA + + Sbjct: 480 WQAKLHQIVPSYGTKLNDSPEAVAKEWAYTAGVLQLMPPPVIPQMAAPKATEAAKPAAQP 539 Query: 541 ANASADMAL 549 + ++D+AL Sbjct: 540 SKPASDLAL 548