BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5338.p (231 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777601.1| hypothetical protein Hsero_4224 [Herbaspiril... 159 2e-37 ref|YP_004715786.1| hypothetical protein PSTAB_3416 [Pseudomonas... 81 1e-13 ref|YP_264158.1| hypothetical protein Psyc_0871 [Psychrobacter a... 79 7e-13 ref|ZP_06068984.1| predicted protein [Acinetobacter lwoffii SH14... 65 9e-09 ref|YP_560135.1| hypothetical protein Bxe_A0851 [Burkholderia xe... 58 1e-06 >ref|YP_003777601.1| hypothetical protein Hsero_4224 [Herbaspirillum seropedicae SmR1] gb|ADJ65693.1| hypothetical protein Hsero_4224 [Herbaspirillum seropedicae SmR1] Length = 242 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 133/229 (58%), Positives = 164/229 (71%) Query: 1 MDKSLWSFLLPQWDGTAYGGLQWVFALVLLLLVIALPLLLSRSARPAQWQARLQALTGDR 60 MD+S+ FLLPQW GGLQ VFAL+ +L +I +P L+ R+A PAQWQ R AL+ D Sbjct: 14 MDRSVLGFLLPQWQAAGEGGLQLVFALLFVLALILMPWLVRRAATPAQWQQRWAALSADP 73 Query: 61 GPLPATTTPDELSQAVATAPERWAAAMPGLILMLGLLGTFIGLGLALTATAGVLGPQAAP 120 LP++ TP++LSQ VAT PERWA +PGL+LM GLLGTFIGLGLAL +G L AP Sbjct: 74 QSLPSSITPEQLSQIVATGPERWARLVPGLLLMAGLLGTFIGLGLALGEASGALDGAQAP 133 Query: 121 GALGAVIDALGSKFKIAAWSMLAFLILKSWMILRGHEQARLAWSIGILKDVATAAAQAQA 180 AL AV+D LG+KF+IAAW +L++LIL+ W HEQARLAWS L +A A Q Q Sbjct: 134 TALAAVLDTLGAKFRIAAWGILSYLILRLWWAASAHEQARLAWSAAALGALAAQAVQRQV 193 Query: 181 VQHAEEQQRLVDAIKQSGQALLVAQQAEAQRAHLRHGELLDALQQTTAR 229 Q +QQRL++AI +GQALL AQQAEAQRAH+RH EL+DALQ+ AR Sbjct: 194 QQEQAQQQRLIEAISHNGQALLAAQQAEAQRAHVRHAELVDALQRQVAR 242 >ref|YP_004715786.1| hypothetical protein PSTAB_3416 [Pseudomonas stutzeri ATCC 17588 = LMG 11199] gb|AEJ06697.1| hypothetical protein PSTAB_3416 [Pseudomonas stutzeri ATCC 17588 = LMG 11199] Length = 644 Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 75/210 (35%), Positives = 117/210 (55%), Gaps = 13/210 (6%) Query: 8 FLLPQWDGTAYGGLQWVFALVLLLLVIALPLLLSRSARPAQWQARLQALTGDRGPLPATT 67 FLLP D +Q +F + +LLL A + + ARPA W+ + D + + Sbjct: 9 FLLPGSDL-----IQLIFGMSILLLGSATLIAMFWGARPANWERKWNGSGADDLDVEHGS 63 Query: 68 TPDELSQAVATAPERWAAAMPGLILMLGLLGTFIGLGLALTATAGVLGPQAAPG------ 121 +E+S AVA+ E+ A MPG++L+LGLLGTF+GLG+AL + +L A G Sbjct: 64 V-NEISAAVASTGEKMADLMPGVLLILGLLGTFLGLGIALNKASSILIEANAGGGMDNTM 122 Query: 122 -ALGAVIDALGSKFKIAAWSMLAFLILKSWMILRGHEQARLAWSIGILKDVATAAAQAQA 180 +L +++ LG+KFK + W ++AFLI+K+ L+G+E+ RL W IG +K + QA Sbjct: 123 ISLMGMMEGLGTKFKTSTWGLMAFLIIKALAGLKGYEEKRLRWCIGKMKAAFEHSRQASR 182 Query: 181 VQHAEEQQRLVDAIKQSGQALLVAQQAEAQ 210 ++QQ L+ +K+ Q LL QA + Sbjct: 183 ESSEQQQQALLGILKKLDQTLLAQLQANRE 212 >ref|YP_264158.1| hypothetical protein Psyc_0871 [Psychrobacter arcticus 273-4] gb|AAZ18724.1| conserved hypothetical protein [Psychrobacter arcticus 273-4] Length = 590 Score = 78.6 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 63/190 (33%), Positives = 100/190 (52%), Gaps = 21/190 (11%) Query: 21 LQWVFALVLLLLVIALPLLLSRSARPAQWQAR---------LQALTGDRGPLPATTTPDE 71 L +F + L+ L IA + L SA+ A W+A L G+ G + E Sbjct: 17 LSTIFVVSLITLTIATVVWLLISAKEANWEANWYGGDLNDDTNNLAGEHGSV------HE 70 Query: 72 LSQAVATAPERWAAAMPGLILMLGLLGTFIGLGLALTATAGVL------GPQAAPGALGA 125 LSQA+AT E+ A MP ++L++GLLGTF+GLG+AL + VL G +A L Sbjct: 71 LSQAIATKAEKVAEIMPSMLLIVGLLGTFLGLGIALNKASTVLAMADTAGMDSAMTQLMG 130 Query: 126 VIDALGSKFKIAAWSMLAFLILKSWMILRGHEQARLAWSIGILKDVATAAAQAQAVQHAE 185 ++D LG+KFK + W +L F+IL + G ++ RL W++ +++ A A + E Sbjct: 131 LMDGLGAKFKTSTWGILCFIILNLLFNIFGFQEKRLVWAVKKVREEAQAKEMVLNSKELE 190 Query: 186 EQQRLVDAIK 195 Q +++ +K Sbjct: 191 RHQVMIETLK 200 >ref|ZP_06068984.1| predicted protein [Acinetobacter lwoffii SH145] gb|EEY90486.1| predicted protein [Acinetobacter lwoffii SH145] Length = 644 Score = 65.1 bits (157), Expect = 9e-09, Method: Composition-based stats. Identities = 55/164 (33%), Positives = 89/164 (54%), Gaps = 11/164 (6%) Query: 71 ELSQAVATAPERWAAAMPGLILMLGLLGTFIGLGLA-------LTATAGVLGPQAAPGAL 123 E+S+AVAT E+ A MPG+IL++GLLGTF+GLGLA LT + A+ L Sbjct: 73 EISEAVATPAEKLADIMPGMILIIGLLGTFLGLGLALDKASSILTGANALSNMDASMANL 132 Query: 124 GAVIDALGSKFKIAAWSMLAFLILKSWMILRGHEQARLAWSIGILKDVATAAAQAQAVQH 183 +++ LG+KFK + W +LAF++LK + G+E+ RL WSI +K+ + + Sbjct: 133 MQMLEGLGTKFKTSTWGLLAFILLKVILSKNGYEERRLRWSIEKVKNELDIVRDQRLQEE 192 Query: 184 AEEQQRLVDAIKQSGQALLVAQQAEAQRAHLRHGELLDALQQTT 227 +L+D + Q++ + + + + E L+ L Q T Sbjct: 193 RNNNNKLIDCM----QSIAMQFEKTVAKNQSTNQEQLEQLTQHT 232 >ref|YP_560135.1| hypothetical protein Bxe_A0851 [Burkholderia xenovorans LB400] gb|ABE32083.1| hypothetical protein Bxe_A0851 [Burkholderia xenovorans LB400] Length = 505 Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 60/190 (31%), Positives = 94/190 (49%), Gaps = 18/190 (9%) Query: 21 LQWVFALVLLLLVIALPLLLSRSARPAQWQARLQALTGDRGPLPATT------TPDELSQ 74 LQ F +++ LV+ + +A+ W+ + T D P+ + +L Q Sbjct: 18 LQVGFLTIIVALVLGTAICTHITAKARSWERKWNRGTPDD---PSDDLDIEHGSVTDLWQ 74 Query: 75 AVATAPERWAAAMPGLILMLGLLGTFIGLGLALTATAGVLGPQAAPGALGA--------- 125 AV+T PE+ A MP L+L++GLLGTF+GLG+AL + +L A A GA Sbjct: 75 AVSTTPEKLAEVMPSLLLVIGLLGTFLGLGIALNHASSILNQPDALSANGAAKSMNDLVG 134 Query: 126 VIDALGSKFKIAAWSMLAFLILKSWMILRGHEQARLAWSIGILKDVATAAAQAQAVQHAE 185 ++ LG+KFK + W + F++LK W + RL W IG +K QA+A Sbjct: 135 LLQGLGTKFKTSTWGITGFVLLKFWSECTRFPEKRLTWVIGKVKTELERRKQAEAAAADA 194 Query: 186 EQQRLVDAIK 195 +Q L + I+ Sbjct: 195 KQGALFEQIR 204