BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5337.p (311 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777600.1| hypothetical protein Hsero_4223 [Herbaspiril... 258 7e-67 ref|YP_264159.1| OmpA/MotB [Psychrobacter arcticus 273-4] >gi|71... 193 2e-47 ref|YP_004715787.1| OmpA/MotB [Pseudomonas stutzeri ATCC 17588 =... 190 3e-46 ref|ZP_06068985.1| OmpA/MotB [Acinetobacter lwoffii SH145] >gi|2... 176 6e-42 ref|ZP_07777610.1| chemotaxis MotB protein [Pseudomonas fluoresc... 149 6e-34 >ref|YP_003777600.1| hypothetical protein Hsero_4223 [Herbaspirillum seropedicae SmR1] gb|ADJ65692.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 161 Score = 258 bits (660), Expect = 7e-67, Method: Composition-based stats. Identities = 141/160 (88%), Positives = 155/160 (96%) Query: 151 LTGVLREVQTVFAQQGAANLVAVDTEAGKITLKEGAFRRGSACIEPEARAAFAQVEERIA 210 +T VLR+VQTVFAQQGAA+LVAVDTEAGKITLKEGAFRRGSAC+E EA+AAFAQVEERIA Sbjct: 1 MTVVLRQVQTVFAQQGAASLVAVDTEAGKITLKEGAFRRGSACVESEAKAAFAQVEERIA 60 Query: 211 DYLTRNPAGRIYVEGHTDDKPVKAPVTDVRAYCTVYDDNFTLSAARAREARLLLIGRSAP 270 +YL +NPAGRIYVEGHTDDKPVKAPVTDVRA+CTVYDDN TLSAARAR+ARLLL+GRS+P Sbjct: 61 EYLQQNPAGRIYVEGHTDDKPVKAPVTDVRAFCTVYDDNITLSAARARQARLLLVGRSSP 120 Query: 271 EAARRVIVAGYGDSQPLPGLAASDERNRRVEVRFVNGGER 310 EAARRVIVAGYGDSQPLPGLAASDERNRRVEVRFV+G ++ Sbjct: 121 EAARRVIVAGYGDSQPLPGLAASDERNRRVEVRFVSGAQK 160 >ref|YP_264159.1| OmpA/MotB [Psychrobacter arcticus 273-4] gb|AAZ18725.1| probable OmpA/MotB [Psychrobacter arcticus 273-4] Length = 211 Score = 193 bits (491), Expect = 2e-47, Method: Composition-based stats. Identities = 99/225 (44%), Positives = 141/225 (62%), Gaps = 17/225 (7%) Query: 80 MKESDHVWVAASGLMAALAAVLMVLLVATRAGGTHVVQAALPIQPPPAPAATPAPAAAPT 139 M++ W++ + LM+ + AV+M+LLV + T+ A Sbjct: 1 MQKKPSEWISIADLMSGVMAVVMLLLVISVLQNTY--------------AEIKHKQVMEN 46 Query: 140 STARREADGPGLTGVLREVQTVFAQQGAANLVAVDTEAGKITLKEGAFRRGSACIEPEAR 199 S +++D + +L ++QT A QGA NL+ + E KITLK+ F RGSACI PEA+ Sbjct: 47 S---QQSDRQKIATLLEDIQTSVATQGAGNLIDFNMEQSKITLKDNVFARGSACITPEAK 103 Query: 200 AAFAQVEERIADYLTRNPAGRIYVEGHTDDKPVKAPVTDVRAYCTVYDDNFTLSAARARE 259 AF +E++I +L ++ +I+VEGHTD+ PV PVTD R +CTVYDDN+TLSAARARE Sbjct: 104 TAFNNIEDKITSFLQQSSNAKIFVEGHTDNIPVSQPVTDYRRFCTVYDDNYTLSAARARE 163 Query: 260 ARLLLIGRSAPEAARRVIVAGYGDSQPLPGLAASDERNRRVEVRF 304 AR LL+G+ A+R++VAGYGDSQP+ G++ D+ NRRVEVR Sbjct: 164 ARKLLVGQLDTSIAKRIVVAGYGDSQPIKGISPEDDANRRVEVRL 208 >ref|YP_004715787.1| OmpA/MotB [Pseudomonas stutzeri ATCC 17588 = LMG 11199] gb|AEJ06698.1| OmpA/MotB [Pseudomonas stutzeri ATCC 17588 = LMG 11199] Length = 215 Score = 190 bits (482), Expect = 3e-46, Method: Composition-based stats. Identities = 107/226 (47%), Positives = 145/226 (64%), Gaps = 17/226 (7%) Query: 80 MKESDHVWVAASGLMAALAAVLMVLLVATRAGGTHVVQAALPIQPPPAPAATPAPAAAPT 139 MK+ + WV+ S LMA + AV+M+LLV + T+ + L Q + Sbjct: 1 MKDKPNEWVSISDLMAGVMAVVMLLLVMSVLQKTY---SDLKHQQ----------ELEQS 47 Query: 140 STARREADGPGLTGVLREVQTVFAQQGAANLVAVDTEAGKITLKEGAFRRGSACIEPEAR 199 S ++R+ L+G L++ + A +G LVA+D A K TL++G F RGSACI +AR Sbjct: 48 SQSQRDKVSHMLSG-LKQTLSGTASEG---LVAIDVNAQKFTLRDGVFGRGSACITDQAR 103 Query: 200 AAFAQVEERIADYLTRNPAGRIYVEGHTDDKPVKAPVTDVRAYCTVYDDNFTLSAARARE 259 AF+ +EE++AD+L P G++YVEGHTD+ PV PVT+ A+CTVYDDNFTLSAARARE Sbjct: 104 QAFSSIEEKVADFLNEFPKGKVYVEGHTDNLPVSRPVTNFEAFCTVYDDNFTLSAARARE 163 Query: 260 ARLLLIGRSAPEAARRVIVAGYGDSQPLPGLAASDERNRRVEVRFV 305 AR L+ G ARRV+VAGYGDSQP+PG+ D R RR+EV +V Sbjct: 164 ARKLITGNLTLTDARRVVVAGYGDSQPIPGVPPEDARQRRIEVLWV 209 >ref|ZP_06068985.1| OmpA/MotB [Acinetobacter lwoffii SH145] gb|EEY90487.1| OmpA/MotB [Acinetobacter lwoffii SH145] Length = 215 Score = 176 bits (445), Expect = 6e-42, Method: Composition-based stats. Identities = 99/229 (43%), Positives = 130/229 (56%), Gaps = 25/229 (10%) Query: 80 MKESDHVWVAASGLMAALAAVLMVLLVATRAGGTHVVQAALPIQPPPAPAATPAPAAAPT 139 MK+ WV+ S LMA + AV+M+LLV + T+ A Sbjct: 1 MKDKPSEWVSISDLMAGVMAVVMLLLVMSVLQKTY---------------------AELR 39 Query: 140 STARREADGPG----LTGVLREVQTVFAQQGAANLVAVDTEAGKITLKEGAFRRGSACIE 195 E G ++ +L +++ + GA+NL++ D GKITLKE F GSACI Sbjct: 40 HKQELEQGGAAQQKRISEMLTDLKNSVDETGASNLISFDIADGKITLKENIFNVGSACIT 99 Query: 196 PEARAAFAQVEERIADYLTRNPAGRIYVEGHTDDKPVKAPVTDVRAYCTVYDDNFTLSAA 255 P A F +++RI +L NP ++VEGHTD+ VK PV D + CTVYDDNFTLSAA Sbjct: 100 PSAAKTFKSLDQRIVSFLKENPKASVFVEGHTDNSIVKQPVLDFKEKCTVYDDNFTLSAA 159 Query: 256 RAREARLLLIGRSAPEAARRVIVAGYGDSQPLPGLAASDERNRRVEVRF 304 RAREAR L+I A RV+VAGYGDS+PL G+ SD RNRRVE++F Sbjct: 160 RAREARKLIISSLDANEANRVVVAGYGDSRPLNGIDPSDGRNRRVEIQF 208 >ref|ZP_07777610.1| chemotaxis MotB protein [Pseudomonas fluorescens WH6] gb|EFQ61232.1| chemotaxis MotB protein [Pseudomonas fluorescens WH6] Length = 229 Score = 149 bits (376), Expect = 6e-34, Method: Composition-based stats. Identities = 97/226 (42%), Positives = 137/226 (60%), Gaps = 6/226 (2%) Query: 80 MKESDHVWVAASGLMAALAAVLMVLLVATRAGGTHVVQAALPIQPPPAPAATPAPAAAPT 139 MKE + WV+ S LMA + AV+M++LV + +AA+ ++ AA + Sbjct: 1 MKEKPNEWVSISDLMAGVMAVVMLMLVVSVLQ-NKAAEAAMAVEKQQMEAARQEERSKGD 59 Query: 140 STARREADGPGLTGVLREVQTVFAQQGAANLVAVDTEAGKITLKEGAFRRGSACIEPEAR 199 + R L+ +L +Q+ + G +LV +D + ++TL + AF RGSACI P A+ Sbjct: 60 AAQR-----ASLSKLLAAMQSDLQRTGETDLVDIDIQNRRLTLPDNAFARGSACITPAAQ 114 Query: 200 AAFAQVEERIADYLTRNPAGRIYVEGHTDDKPVKAPVTDVRAYCTVYDDNFTLSAARARE 259 A + R+A ++ G++ VEGHTD+ PV PVTD +CTVYDDN+TLSAARARE Sbjct: 115 GALTLLSARVATFIKDYGQGQVLVEGHTDNLPVSRPVTDYERFCTVYDDNYTLSAARARE 174 Query: 260 ARLLLIGRSAPEAARRVIVAGYGDSQPLPGLAASDERNRRVEVRFV 305 AR LLI P+ ARRV+VAGYGDS+P PG+ + NRRVEV+ V Sbjct: 175 ARKLLIQAIEPQQARRVVVAGYGDSRPKPGIDPASALNRRVEVQLV 220