BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.5336.p         (122 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_02904731.1| conserved hypothetical protein [Burkholderia ...   123   1e-26
ref|YP_001807543.1| hypothetical protein BamMC406_0835 [Burkhold...   119   1e-25
ref|YP_002911762.1| hypothetical protein bglu_1g19490 [Burkholde...    93   1e-17
ref|YP_777563.1| hypothetical protein Bamb_5682 [Burkholderia am...    90   9e-17
ref|ZP_02377854.1| hypothetical protein BuboB_09024 [Burkholderi...    85   3e-15

>ref|ZP_02904731.1| conserved hypothetical protein [Burkholderia ambifaria MEX-5]
 gb|EDT44070.1| conserved hypothetical protein [Burkholderia ambifaria MEX-5]
          Length = 118

 Score =  123 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 58/116 (50%), Positives = 81/116 (69%)

Query: 1   MRAIAWERLEAWVRKENATSPKKQLTRDTQLDDDLDVTGDEAEDFMEHFFKEFSIDFGDY 60
           M    W  LE +VR+E   SPK+ LT+   ++ DLD+TGD+A +FME FF +F +  GD+
Sbjct: 1   MNQFTWNELEDFVRREAGVSPKEILTKGHAVEGDLDITGDDAVEFMESFFDKFPVQVGDF 60

Query: 61  NFDHYFVPEGFSPLEIFLLLISKKKRASYDRPPITLGMLYQAALDGRWDCARLDSL 116
            F+ YF  EGFS +E+  ++ S+K+RA YD+ P+TLGMLYQA LDG W+  RL+SL
Sbjct: 61  EFNRYFSGEGFSLIEVARMVFSRKRRAKYDKVPLTLGMLYQAILDGEWNNQRLESL 116


>ref|YP_001807543.1| hypothetical protein BamMC406_0835 [Burkholderia ambifaria MC40-6]
 gb|ACB63327.1| conserved hypothetical protein [Burkholderia ambifaria MC40-6]
          Length = 118

 Score =  119 bits (299), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 57/116 (49%), Positives = 79/116 (68%)

Query: 1   MRAIAWERLEAWVRKENATSPKKQLTRDTQLDDDLDVTGDEAEDFMEHFFKEFSIDFGDY 60
           M    W   E +VR+E   SPKK LT+   ++ DLD+TGD+A +FME FF +F +  GD+
Sbjct: 1   MSQFTWNEFEDFVRREAGVSPKKILTKGHAVEGDLDITGDDAIEFMESFFDKFPVQVGDF 60

Query: 61  NFDHYFVPEGFSPLEIFLLLISKKKRASYDRPPITLGMLYQAALDGRWDCARLDSL 116
            F+ YF  EGFS +E+  ++ S+K +A YD+ P+TLGMLYQA LDG W+  RL+SL
Sbjct: 61  EFNRYFSGEGFSLIEVARMVFSRKHQAKYDKVPLTLGMLYQAILDGEWNNQRLESL 116


>ref|YP_002911762.1| hypothetical protein bglu_1g19490 [Burkholderia glumae BGR1]
 gb|ACR29058.1| Hypothetical protein bglu_1g19490 [Burkholderia glumae BGR1]
          Length = 113

 Score = 93.2 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 53/109 (48%), Positives = 71/109 (65%), Gaps = 3/109 (2%)

Query: 1   MRAIAWERLEAWVRKENATSPKKQLTRDTQLDDDLDVTGDEAEDFMEHFFKEFSIDFGDY 60
           M  ++WE +EA+VR E    P K LTRDT+L +DL +TGD+A DFM  FF+ F ID GD+
Sbjct: 1   MADVSWEAIEAFVRAEVGLGPSKPLTRDTRLWEDLGMTGDDANDFMGCFFERFQIDPGDF 60

Query: 61  NFDHYFVPEGFSPL-EIFLLLISKKKRASYDRPPITLGMLYQAALDGRW 108
           +F  YF+ EG   L  +F   + +K +    R PITLGML+ AALD +W
Sbjct: 61  DFHRYFLMEGEGGLYSLFRRWVLRKPKTR--REPITLGMLHLAALDRKW 107


>ref|YP_777563.1| hypothetical protein Bamb_5682 [Burkholderia ambifaria AMMD]
 gb|ABI91229.1| hypothetical protein Bamb_5682 [Burkholderia ambifaria AMMD]
          Length = 116

 Score = 90.1 bits (222), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 53/114 (46%), Positives = 71/114 (62%), Gaps = 8/114 (7%)

Query: 6   WERLEAWVRKENATSPKKQLTRDTQLDDDLDVTGDEAEDFMEHFFKEFSIDFGDYNFDHY 65
           WE LEA+VR+E A S K+Q+T DT L DDL  TGD+A+ FME FF  F ++ GDY+F  Y
Sbjct: 7   WEALEAFVRQEAAVSSKRQITVDTSLTDDLGQTGDDADIFMERFFARFEVERGDYDFGRY 66

Query: 66  FVPEGFSPLEIFLLLISKK----KRASYDRPPITLGMLYQAALDGRWDCARLDS 115
           F+ EG    E FL  + +K    K  ++ R  +T+GML +A   G WD A + S
Sbjct: 67  FLMEG----EGFLYHVVRKFILRKPHTFKRDALTVGMLCKAVSLGVWDSAAIKS 116


>ref|ZP_02377854.1| hypothetical protein BuboB_09024 [Burkholderia ubonensis Bu]
          Length = 117

 Score = 85.1 bits (209), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 48/117 (41%), Positives = 66/117 (56%)

Query: 1   MRAIAWERLEAWVRKENATSPKKQLTRDTQLDDDLDVTGDEAEDFMEHFFKEFSIDFGDY 60
           M  + W+ +EA+VR E        L+  T+L +DL  TGDEA DFM  FF+ F++D GD+
Sbjct: 1   MENVRWDEIEAFVRSEAGLGKSAPLSAATRLWEDLGQTGDEANDFMGLFFERFTVDTGDF 60

Query: 61  NFDHYFVPEGFSPLEIFLLLISKKKRASYDRPPITLGMLYQAALDGRWDCARLDSLS 117
           +F  YF+ EG   L         +K     R  ITL MLY+AA++ +WD  RL  LS
Sbjct: 61  DFHRYFLMEGEGLLYSLFQRWVLRKPHGLKRESITLAMLYRAAVEKKWDARRLAELS 117