BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.5335.p         (156 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_02904732.1| conserved hypothetical protein [Burkholderia ...   146   1e-33
ref|ZP_07378754.1| conserved hypothetical protein [Pantoea sp. a...   115   2e-24
ref|YP_002911763.1| hypothetical protein bglu_1g19500 [Burkholde...   112   1e-23
ref|YP_554637.1| hypothetical protein Bxe_B0666 [Burkholderia xe...   111   5e-23
ref|YP_001811779.1| hypothetical protein BamMC406_5117 [Burkhold...   110   8e-23

>ref|ZP_02904732.1| conserved hypothetical protein [Burkholderia ambifaria MEX-5]
 gb|EDT44071.1| conserved hypothetical protein [Burkholderia ambifaria MEX-5]
          Length = 143

 Score =  146 bits (368), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 79/143 (55%), Positives = 103/143 (72%)

Query: 14  MDNTYSFGLHTQLSPNELLFYVFIDETCKEFGVDDVSAAAAALAGRHRIPGRTKPSDATK 73
           M+NTY FG H  L+P EL F VFIDETCKE GVDDV+A  A +AG++ +P R KP   T 
Sbjct: 1   MNNTYDFGTHRDLTPMELFFLVFIDETCKELGVDDVAAVVAIVAGQNWMPTRAKPFGTTP 60

Query: 74  QTSVASIVGRRSLNCDLKRKILPTLNNQSIKELNTLMTQNIGRCVGRAFPLVGYAVSAHN 133
            TSVASI+ R+ L+ DLK+KILPTL N S+K L  ++ +NIG  VGRA P+VG+ ++A+N
Sbjct: 61  GTSVASILSRKYLDYDLKKKILPTLTNASVKRLKFILVRNIGVFVGRAVPVVGWVIAANN 120

Query: 134 VASIKSRSVANYNRRVRTEDKIL 156
           V +I  RSV+ YN  V+ EDK+ 
Sbjct: 121 VTTISIRSVSRYNALVKPEDKVF 143


>ref|ZP_07378754.1| conserved hypothetical protein [Pantoea sp. aB]
 gb|EFM20037.1| conserved hypothetical protein [Pantoea sp. aB]
          Length = 151

 Score =  115 bits (288), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 63/147 (42%), Positives = 87/147 (59%), Gaps = 2/147 (1%)

Query: 11  TTIMDNTYSFGLHTQLSPNELLFYVFIDETCKEFGVDDVSAAAAALAGRHRIPGRTKPSD 70
           T  +D TY F     L+P E LF++ IDET K+ GV D+ A A  + G + I    KP+ 
Sbjct: 4   TEQLDGTYYFNQLPNLTPQEFLFWILIDETQKQLGVQDILAVAGLILGNNNIDVPGKPNT 63

Query: 71  ATKQTSVASIVGRRSLNCDLKRKILPTLNNQ--SIKELNTLMTQNIGRCVGRAFPLVGYA 128
           AT  TSVAS+  R+ L+   +R+ILPTL  +  S++ L      N+G  VGRA P+VG+ 
Sbjct: 64  ATPGTSVASLFFRKHLSYKFRRRILPTLTAKSFSLRGLKIFWVNNLGAFVGRAVPVVGWL 123

Query: 129 VSAHNVASIKSRSVANYNRRVRTEDKI 155
           + A++VA I   +V  YN  VR EDKI
Sbjct: 124 ILANDVAQISFHTVHRYNLIVRPEDKI 150


>ref|YP_002911763.1| hypothetical protein bglu_1g19500 [Burkholderia glumae BGR1]
 gb|ACR29059.1| Hypothetical protein bglu_1g19500 [Burkholderia glumae BGR1]
          Length = 146

 Score =  112 bits (281), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 56/143 (39%), Positives = 84/143 (58%)

Query: 14  MDNTYSFGLHTQLSPNELLFYVFIDETCKEFGVDDVSAAAAALAGRHRIPGRTKPSDATK 73
           M N Y++  H  L+P EL F++   ETC++ G+DD+      L+G   +P R K + ATK
Sbjct: 4   MTNAYNYLGHPDLTPAELFFFIAAQETCEQVGIDDIEGVILILSGWPLLPTRGKFAGATK 63

Query: 74  QTSVASIVGRRSLNCDLKRKILPTLNNQSIKELNTLMTQNIGRCVGRAFPLVGYAVSAHN 133
            TSVAS++ R       KR++LPTL  +SIK    ++T+ +   VGRA P +G+ + A +
Sbjct: 64  GTSVASVMARSVFRFQFKRRVLPTLTLESIKSFRVILTRKLSVFVGRAVPGLGWVLLARD 123

Query: 134 VASIKSRSVANYNRRVRTEDKIL 156
              I   +VA YN  VR ED++L
Sbjct: 124 AFMIVRNTVAKYNGMVRPEDRVL 146


>ref|YP_554637.1| hypothetical protein Bxe_B0666 [Burkholderia xenovorans LB400]
 gb|ABE35287.1| conserved hypothetical protein [Burkholderia xenovorans LB400]
          Length = 163

 Score =  111 bits (277), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 57/143 (39%), Positives = 91/143 (63%), Gaps = 1/143 (0%)

Query: 13  IMDNTYSFGLHTQLSPNELLFYVFIDETCKEFGVDDVSAAAAALAGRHRIPGRTKPSDAT 72
           I  N Y +G  T L+P +L F + ++ETC   GV D++AA + +AG   +  R K +  T
Sbjct: 13  IHSNFYPYGDATGLTPQQLYFAILVEETCNRLGVHDIAAAVSIVAGWPLLSTRAKLAGTT 72

Query: 73  KQTSVASIVGRRSLNCDLKRKILPTLNNQSIKELNTLMTQNIGRCVGRAFPLVGYAVSAH 132
           K TS+AS + R  L+C++  + LPTL  +S++EL    T+N+G  VGR  P +GYA++A+
Sbjct: 73  KGTSIASRISRELLDCNVSMR-LPTLTLKSMRELRFAYTRNLGAFVGRWVPGIGYAMTAY 131

Query: 133 NVASIKSRSVANYNRRVRTEDKI 155
           +V +I  +++  YNR V+ ED+I
Sbjct: 132 DVIAINMQTLRRYNRLVKPEDQI 154


>ref|YP_001811779.1| hypothetical protein BamMC406_5117 [Burkholderia ambifaria MC40-6]
 gb|ACB67563.1| conserved hypothetical protein [Burkholderia ambifaria MC40-6]
          Length = 143

 Score =  110 bits (274), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 60/142 (42%), Positives = 82/142 (57%), Gaps = 1/142 (0%)

Query: 14  MDNTYSFGLHTQLSPNELLFYVFIDETCKEFGVDDVSAAAAALAGRHRIPGRTKPSDATK 73
           M N Y +G H  L+P EL   + ID  C E G+DD    A  L G+  +P R K   A K
Sbjct: 1   MANKYDYGGHGDLTPPELFCLIVIDVACDELGIDDAVGIAMILLGQRFVPTRGKFHGAVK 60

Query: 74  QTSVASIVGRRSLNCDLKRKILPTLNN-QSIKELNTLMTQNIGRCVGRAFPLVGYAVSAH 132
            TSVAS V RR L  ++K KILPT+ + +S+  L    T+ +G  VGRA P+ G+ ++A 
Sbjct: 61  GTSVASRVSRRLLPYEIKHKILPTVTSFKSLVLLKVKFTRELGVFVGRAVPVAGWIITAA 120

Query: 133 NVASIKSRSVANYNRRVRTEDK 154
           +V+ I  RS   YNR V+ ED+
Sbjct: 121 DVSIIMYRSAVTYNRLVKPEDR 142