BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5332.p (192 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777566.1| peptidyl-tRNA hydrolase [Herbaspirillum sero... 376 e-103 ref|YP_004751268.1| peptidyl-tRNA hydrolase [Collimonas fungivor... 321 4e-86 ref|YP_001354820.1| peptidyl-tRNA hydrolase [Janthinobacterium s... 315 2e-84 ref|ZP_08276487.1| Peptidyl-tRNA hydrolase [Oxalobacteraceae bac... 309 1e-82 ref|YP_001101130.1| peptidyl-tRNA hydrolase [Herminiimonas arsen... 306 1e-81 >ref|YP_003777566.1| peptidyl-tRNA hydrolase [Herbaspirillum seropedicae SmR1] gb|ADJ65658.1| peptidyl-tRNA hydrolase protein [Herbaspirillum seropedicae SmR1] Length = 192 Score = 376 bits (965), Expect = e-103, Method: Composition-based stats. Identities = 188/192 (97%), Positives = 190/192 (98%) Query: 1 MSIRLIVGLGNPGPEYEQTRHNAGFWLVDNLAGPVRLAREQRFNALAGKTSIAGNEVWLL 60 MSIRLIVGLGNPGPEYEQTRHNAGFWLVDNLAGPVRLAREQRFNALAGKTSIAG+EVWLL Sbjct: 1 MSIRLIVGLGNPGPEYEQTRHNAGFWLVDNLAGPVRLAREQRFNALAGKTSIAGSEVWLL 60 Query: 61 EPQTYMNRSGQSVGALARFYKINPDEVLVVHDELDLPPGATKIKKGGSSGGHNGLKDITA 120 EPQTYMNRSGQSVGALARFYKINPDEVLVVHDELDLPPGA KIKKGGSSGGHNGLKDITA Sbjct: 61 EPQTYMNRSGQSVGALARFYKINPDEVLVVHDELDLPPGAAKIKKGGSSGGHNGLKDITA 120 Query: 121 ALGTQDYWRLRLGIGHPRTLGLQQPVADFVLHRPRKEEQALINEALDKSLNVIPLLVQGK 180 ALGTQDYWRLRLGIGHPRTLGLQQPVADFVLHRPRKEEQ LINEALD+SLNVIPLLVQGK Sbjct: 121 ALGTQDYWRLRLGIGHPRTLGLQQPVADFVLHRPRKEEQNLINEALDQSLNVIPLLVQGK 180 Query: 181 FEQAMMELHTGK 192 FEQAMMELHTGK Sbjct: 181 FEQAMMELHTGK 192 >ref|YP_004751268.1| peptidyl-tRNA hydrolase [Collimonas fungivorans Ter331] gb|AEK60445.1| Peptidyl-tRNA hydrolase [Collimonas fungivorans Ter331] Length = 194 Score = 321 bits (822), Expect = 4e-86, Method: Composition-based stats. Identities = 158/194 (81%), Positives = 170/194 (87%), Gaps = 2/194 (1%) Query: 1 MSIRLIVGLGNPGPEYEQTRHNAGFWLVDNLAGPV--RLAREQRFNALAGKTSIAGNEVW 58 MSIRLI GLGNPGPEYEQTRHNAGFWLVDNLA + +LARE RFNALA KT+IAG EVW Sbjct: 1 MSIRLIAGLGNPGPEYEQTRHNAGFWLVDNLANDLGRKLAREARFNALAAKTNIAGQEVW 60 Query: 59 LLEPQTYMNRSGQSVGALARFYKINPDEVLVVHDELDLPPGATKIKKGGSSGGHNGLKDI 118 LLEPQT+MNRSGQSVGALARFYKI DE+LVVHDELDLPPG+ K+KKGGSSGGHNGLKDI Sbjct: 61 LLEPQTFMNRSGQSVGALARFYKIAADEILVVHDELDLPPGSAKLKKGGSSGGHNGLKDI 120 Query: 119 TAALGTQDYWRLRLGIGHPRTLGLQQPVADFVLHRPRKEEQALINEALDKSLNVIPLLVQ 178 TAALGTQDYWRLRLGIGHPRTL LQQ V DFVLHRPRK+EQ I EA+ SL +IPLL + Sbjct: 121 TAALGTQDYWRLRLGIGHPRTLSLQQAVVDFVLHRPRKDEQVPIEEAIADSLKIIPLLCE 180 Query: 179 GKFEQAMMELHTGK 192 GKFE A M+LHT K Sbjct: 181 GKFEAATMQLHTAK 194 >ref|YP_001354820.1| peptidyl-tRNA hydrolase [Janthinobacterium sp. Marseille] gb|ABR88698.1| peptidyl-tRNA hydrolase [Janthinobacterium sp. Marseille] Length = 195 Score = 315 bits (807), Expect = 2e-84, Method: Composition-based stats. Identities = 156/195 (80%), Positives = 169/195 (86%), Gaps = 3/195 (1%) Query: 1 MSIRLIVGLGNPGPEYEQTRHNAGFWLVDNLAGPV---RLAREQRFNALAGKTSIAGNEV 57 M IRLIVGLGNPG EYEQTRHNAGFWLVD LA + L+RE ++NALA KT IAG EV Sbjct: 1 MPIRLIVGLGNPGQEYEQTRHNAGFWLVDQLARNMPRCNLSRESKYNALAAKTVIAGQEV 60 Query: 58 WLLEPQTYMNRSGQSVGALARFYKINPDEVLVVHDELDLPPGATKIKKGGSSGGHNGLKD 117 WLLEPQT+MNRSGQSVGALARFYKI PDEVLV HDELDLPPG K+KKGGSSGGHNGLKD Sbjct: 61 WLLEPQTFMNRSGQSVGALARFYKILPDEVLVAHDELDLPPGVAKLKKGGSSGGHNGLKD 120 Query: 118 ITAALGTQDYWRLRLGIGHPRTLGLQQPVADFVLHRPRKEEQALINEALDKSLNVIPLLV 177 ITAALGTQDYWRLR+GIGHPRTL LQQ V DFVLHRPRKEEQ LI+EA+ KSL+VIP+L Sbjct: 121 ITAALGTQDYWRLRIGIGHPRTLNLQQAVVDFVLHRPRKEEQPLIDEAIAKSLDVIPMLC 180 Query: 178 QGKFEQAMMELHTGK 192 +GKFE A M+LHT K Sbjct: 181 EGKFEAATMQLHTNK 195 >ref|ZP_08276487.1| Peptidyl-tRNA hydrolase [Oxalobacteraceae bacterium IMCC9480] gb|EGF30045.1| Peptidyl-tRNA hydrolase [Oxalobacteraceae bacterium IMCC9480] Length = 196 Score = 309 bits (791), Expect = 1e-82, Method: Composition-based stats. Identities = 150/195 (76%), Positives = 168/195 (86%), Gaps = 3/195 (1%) Query: 1 MSIRLIVGLGNPGPEYEQTRHNAGFWLVDNLAGPV---RLAREQRFNALAGKTSIAGNEV 57 M+IRLIVGLGNPGPEYEQTRHNAGFWLVD LA + +L RE RFNA A K +I +EV Sbjct: 1 MAIRLIVGLGNPGPEYEQTRHNAGFWLVDKLANGIARCKLVRETRFNAFAAKAAIEQHEV 60 Query: 58 WLLEPQTYMNRSGQSVGALARFYKINPDEVLVVHDELDLPPGATKIKKGGSSGGHNGLKD 117 WLLEPQT+MNRSGQSVGALARFYKI DEVLVVHDELDL PGA ++KKGGSSGGHNGLKD Sbjct: 61 WLLEPQTFMNRSGQSVGALARFYKIAVDEVLVVHDELDLLPGAARLKKGGSSGGHNGLKD 120 Query: 118 ITAALGTQDYWRLRLGIGHPRTLGLQQPVADFVLHRPRKEEQALINEALDKSLNVIPLLV 177 ITAALG+QDYWRLRLGIGHPRT G QQPVAD+VLHRPRKEEQ L++EA+ KS+++IP+L Sbjct: 121 ITAALGSQDYWRLRLGIGHPRTQGSQQPVADYVLHRPRKEEQPLLDEAIAKSIDIIPMLC 180 Query: 178 QGKFEQAMMELHTGK 192 GKF+ A M LHT K Sbjct: 181 DGKFDAATMRLHTAK 195 >ref|YP_001101130.1| peptidyl-tRNA hydrolase [Herminiimonas arsenicoxydans] emb|CAL63009.1| peptidyl-tRNA hydrolase (PTH) [Herminiimonas arsenicoxydans] Length = 196 Score = 306 bits (784), Expect = 1e-81, Method: Composition-based stats. Identities = 150/193 (77%), Positives = 165/193 (85%), Gaps = 3/193 (1%) Query: 1 MSIRLIVGLGNPGPEYEQTRHNAGFWLVDNLAGPV---RLAREQRFNALAGKTSIAGNEV 57 M IRLIVGLGNPG EYEQTRHNAGFWLVD LA L+RE +++ALA KT+IAG EV Sbjct: 1 MPIRLIVGLGNPGQEYEQTRHNAGFWLVDELARATPRCTLSRESKYSALAAKTAIAGQEV 60 Query: 58 WLLEPQTYMNRSGQSVGALARFYKINPDEVLVVHDELDLPPGATKIKKGGSSGGHNGLKD 117 WLLEPQT+MNRSGQSVGALARFYKI PDE+LV HDELDLPPG K+KKGGSSGGHNGLKD Sbjct: 61 WLLEPQTFMNRSGQSVGALARFYKILPDEILVAHDELDLPPGIAKLKKGGSSGGHNGLKD 120 Query: 118 ITAALGTQDYWRLRLGIGHPRTLGLQQPVADFVLHRPRKEEQALINEALDKSLNVIPLLV 177 ITAALGTQDYWRLR+GIGHPRTL L Q V DFVLHRPRKEEQ LI+EA+ KSL++IPLL Sbjct: 121 ITAALGTQDYWRLRIGIGHPRTLNLNQAVVDFVLHRPRKEEQPLIDEAIAKSLSIIPLLC 180 Query: 178 QGKFEQAMMELHT 190 +G F A M+LHT Sbjct: 181 EGNFNAAAMKLHT 193