BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.5319.p         (299 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003777560.1| hypothetical protein Hsero_4182 [Herbaspiril...    72   2e-10

>ref|YP_003777560.1| hypothetical protein Hsero_4182 [Herbaspirillum seropedicae SmR1]
 gb|ADJ65652.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 202

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 60/160 (37%), Positives = 89/160 (55%), Gaps = 10/160 (6%)

Query: 111 PDEVQATRMWITQVRPSSTLP--LPAAALSDAATEDSLPG-EDSELPDPFQL---GALAP 164
           PDE+ +TR W+   R  S+     P A+L  AA+E   P   D E+ DPF+L    A  P
Sbjct: 26  PDELASTRQWLAGARQLSSQAGAAPPASLVQAASETPAPPLPDVEIVDPFRLRQDAAAPP 85

Query: 165 ASPTRPAASRVRAQDEEDEENSPVPAAAPIAPLPTPVLRLLGTLRRDQEWIAIAELEGST 224
           A+       RVR    E+E++ PVP+  P APLP    RLLGTLR+    +A+ ++ G+T
Sbjct: 86  ATAVERPPQRVRRDASEEEDDEPVPSPRPTAPLP----RLLGTLRQQDLMLALIDIGGAT 141

Query: 225 RQLQTGDTLPGGLGRVLAVREDALDIGQDDAARQTIAMTT 264
            +LQ G  LP G G++L + E  ++I      RQT+++ +
Sbjct: 142 HRLQAGQQLPDGQGQLLTISETHIEIADPQGTRQTLSLES 181