BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5317.p (299 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777558.1| hypothetical protein Hsero_4180 [Herbaspiril... 155 1e-35 ref|YP_003642391.1| type IV pilus assembly protein PilM [Thiomon... 66 8e-09 ref|ZP_08275830.1| Type IV pilus biogenesis protein PilM [Oxalob... 63 7e-08 ref|YP_313960.1| Type IV pilus assembly protein PilM [Thiobacill... 62 1e-07 ref|NP_842313.1| type 4 fimbrial biogenesis protein PilM [Nitros... 61 2e-07 >ref|YP_003777558.1| hypothetical protein Hsero_4180 [Herbaspirillum seropedicae SmR1] gb|ADJ65650.1| hypothetical protein Hsero_4180 [Herbaspirillum seropedicae SmR1] Length = 376 Score = 155 bits (391), Expect = 1e-35, Method: Composition-based stats. Identities = 135/298 (45%), Positives = 176/298 (59%), Gaps = 15/298 (5%) Query: 13 PRLCAGLDIATDRVRLALLRRSGRRAQLLKLKQRLTGGVICRDGQITDFEALTLICRSLL 72 PRLC GLD+A R+RLAL RR GR+ ++L+L Q + +DGQITD +A+ CR LL Sbjct: 83 PRLCIGLDLAPQRLRLALARRRGRQREVLRLAQAALPDGLLQDGQITDLDAVVQACRPLL 142 Query: 73 DEGGCQGAALALAVPVQGLTGRRLVLPADSHPVQRWRQVQSELAAHGIAADDHAMDYREL 132 D AAL L +P L+ +RLVLPA S +R QV++E++A+G+A DH MDYR Sbjct: 143 DPACPAQAALVLGMPRTCLSVQRLVLPAGSSDWERLAQVRAEMSAYGLAPADHVMDYRV- 201 Query: 133 GPPPGSPSDQQVLAVAASRLIIEDRLSLAAAVGRPLVTLAPEDLCLAAWLRDDRLPGETA 192 P + D + A AAS L +EDRL+LAAA+ RPL L PED CL +LR A Sbjct: 202 -APARAGQDVSLWAWAASSLAVEDRLALAAALHRPLAALPPEDECLGDFLRPAASAAHDA 260 Query: 193 VLRLDRSARWLLHGEGPSHALPEVSARGGHLALLAHAAPLLKPLPRRLLLS------GDH 246 +L LD WL++G+ P+ L A G ALLA APLL+P P+RLLL H Sbjct: 261 LLHLDPDDSWLIYGDTPAQGLRWRPAVAGPTALLAELAPLLRPKPQRLLLDCHPAALPTH 320 Query: 247 PALGTIARAFVKYAGLEARVAAPPSSLVLTPQIAALMP-----SDYQLALALAWEGLA 299 AL + AF +YAGL A A P+ L+L P +A +P + LA+ALAW GLA Sbjct: 321 DALPMLRAAFARYAGLRALPAPLPADLILAP--SARLPGANPVGSFHLAIALAWRGLA 376 >ref|YP_003642391.1| type IV pilus assembly protein PilM [Thiomonas intermedia K12] emb|CAZ87555.1| Putative Type IV pilus assembly protein PilM [Thiomonas sp. 3As] gb|ADG30061.1| type IV pilus assembly protein PilM [Thiomonas intermedia K12] Length = 359 Score = 65.9 bits (159), Expect = 8e-09, Method: Composition-based stats. Identities = 65/222 (29%), Positives = 103/222 (46%), Gaps = 25/222 (11%) Query: 18 GLDIATDRVRLALLRRSGR------RAQLLKLKQRLTGGVICRDGQITDFEALTLICRSL 71 GLDI++ V+L L R RA + L++ G V+ DG I + + R + Sbjct: 17 GLDISSSSVKLVELDMDDRGQYTLLRAAMEPLEK---GSVV--DGNIEKLDDVVEAVRKV 71 Query: 72 LDEGGCQGAALALAVPVQGLTGRRLVLPADSHPVQRWRQVQSELAAH-GIAADDHAMDYR 130 + + G + +A+A+P + +++VLP + + QV+SE + A D+ A+D+ Sbjct: 72 VRKSGTKAKQVAMALPPSAVITKKIVLPGELREEEIEVQVESEANQYIPFAIDEVALDFS 131 Query: 131 ELGPPPGSPSDQQVLAVAASRLIIEDRLSLAAAVGRPLVTLAPEDLCLAAWLRDDRLPGE 190 LGP SP DQ+VL A+ R ++DR +A A G V + E RL + Sbjct: 132 VLGPSSTSPGDQEVLIAASRREKVDDRRGIAEAAGLKPVVMDIEAFA-------SRLAAQ 184 Query: 191 TAVLRLDRSARWLLHGEGPSHALPEVSARGGHLALLAHAAPL 232 + RL R+ LL AL EV A L +L + L Sbjct: 185 RLIERLPRAGLDLL------VALFEVGASSTSLQILRNGETL 220 >ref|ZP_08275830.1| Type IV pilus biogenesis protein PilM [Oxalobacteraceae bacterium IMCC9480] gb|EGF30702.1| Type IV pilus biogenesis protein PilM [Oxalobacteraceae bacterium IMCC9480] Length = 359 Score = 62.8 bits (151), Expect = 7e-08, Method: Composition-based stats. Identities = 67/252 (26%), Positives = 114/252 (45%), Gaps = 22/252 (8%) Query: 18 GLDIATDRVRLALLRRSGRRAQLLK--LKQRLTGGVICRDGQITDFEALTLICRSLLDEG 75 GLDI+T V+L L G+ L+ + L G + DG I + E + R + + Sbjct: 18 GLDISTSGVKLVELAEVGKNELRLEHYASESLPRGAVV-DGNIENIEQVAEAVRRVWKKS 76 Query: 76 GCQGAALALAVPVQGLTGRRLVLPADSHPVQRWRQVQSELAAH-GIAADDHAMDYRELGP 134 G + +AL +P + +++VLP QV++E + + A D+ ++D+ +GP Sbjct: 77 GTRARLVALGMPPASVITKKIVLPGGLSEEDLEFQVETEASQYIPFALDEVSLDFDVVGP 136 Query: 135 PPGSPSDQQVLAVAASRLIIEDRLSLAAAVGRPLVTLAPEDLCLAAWLRDDRLPGETAVL 194 SP D VL A + +EDR+++A A G + + E A L DRL Sbjct: 137 AAHSPEDVDVLIAATRKEKVEDRVAVAEAAGLKPIVMDIESYSARAAL--DRL------- 187 Query: 195 RLDRSARWLLHGEGPSHALPEVSARGGHLALLAHAAPLLKPLPRRLLLSGDHPALGTIAR 254 + RS++ G G AL ++ + H+++L P+ + R G H I R Sbjct: 188 -VTRSSQ---GGRGQIVALFQIGTQVTHISVLLDGQPIYE----REQPFGGHQLTQDIVR 239 Query: 255 AF-VKYAGLEAR 265 + + Y EA+ Sbjct: 240 TYGLSYEDAEAK 251 >ref|YP_313960.1| Type IV pilus assembly protein PilM [Thiobacillus denitrificans ATCC 25259] gb|AAZ96155.1| Type IV pilus assembly protein PilM [Thiobacillus denitrificans ATCC 25259] Length = 362 Score = 62.0 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 43/152 (28%), Positives = 79/152 (51%), Gaps = 6/152 (3%) Query: 18 GLDIATDRVRLALLRRSGRRAQLLKLKQRLTGGV---ICRDGQITDFEALTLICRSLLDE 74 GLDI+T ++L L +G+ +L++++ + + DG I + + + R Sbjct: 19 GLDISTTAIKLVELSDAGK--GMLRVERYIIEPLPKDAVSDGNIANLDQVADTLRHAWKT 76 Query: 75 GGCQGAALALAVPVQGLTGRRLVLPADSHPVQRWRQVQSEL-AAHGIAADDHAMDYRELG 133 G + +ALA+P + ++++ PA ++ QV++E A D+ +D++ LG Sbjct: 77 LGSRVKNVALALPSSAVITKKILAPASLTGIELENQVEAEANQVIPFALDEVNLDFQVLG 136 Query: 134 PPPGSPSDQQVLAVAASRLIIEDRLSLAAAVG 165 P PGSP D Q+L AA + +EDR++ A G Sbjct: 137 PSPGSPDDMQILLAAARKEKVEDRVAAVEAAG 168 >ref|NP_842313.1| type 4 fimbrial biogenesis protein PilM [Nitrosomonas europaea ATCC 19718] emb|CAD86228.1| putative type 4 fimbrial biogenesis protein PilM [Nitrosomonas europaea ATCC 19718] Length = 377 Score = 61.2 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 43/174 (24%), Positives = 86/174 (49%), Gaps = 5/174 (2%) Query: 11 GTPRLCAGLDIATDRVRLALLRRSGRRAQLLKLKQRLTGGV---ICRDGQITDFEALTLI 67 GT R+ G+DI+ +++ L R GR +L++ + + +DG I E ++ Sbjct: 25 GTARML-GVDISASSIKVVELSRKGRLPHSYRLERYVIEPMPVDALQDGGINQIEQVSEC 83 Query: 68 CRSLLDEGGCQGAALALAVPVQGLTGRRLVLPADSHPVQRWRQVQSELAAH-GIAADDHA 126 R + G + + +A+P+ + +++ +PA QV++E + A D+ Sbjct: 84 LRRAVKRMGARQKKIVMALPLTSVITKKINVPAGLREDDLEFQVETEANQYVPFALDEVN 143 Query: 127 MDYRELGPPPGSPSDQQVLAVAASRLIIEDRLSLAAAVGRPLVTLAPEDLCLAA 180 +D++ +GP PG P + +VL AA + +EDR++ A + G ++ + E A Sbjct: 144 LDFQVIGPVPGHPEEVEVLLAAARKDKVEDRVATAVSAGLKVMVMDVEQFTAQA 197