BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5315.p (395 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777556.1| beta-lactamase class C protein [Herbaspirill... 685 0.0 ref|YP_002908345.1| beta-lactamase class C protein [Burkholderia... 409 e-112 ref|YP_001754347.1| beta-lactamase [Methylobacterium radiotolera... 241 1e-61 ref|ZP_00050900.1| COG1680: Beta-lactamase class C and other pen... 240 3e-61 ref|YP_745258.1| beta-lactamase family protein [Granulibacter be... 226 6e-57 >ref|YP_003777556.1| beta-lactamase class C protein [Herbaspirillum seropedicae SmR1] gb|ADJ65648.1| beta-lactamase class C protein [Herbaspirillum seropedicae SmR1] Length = 403 Score = 685 bits (1768), Expect = 0.0, Method: Composition-based stats. Identities = 344/394 (87%), Positives = 365/394 (92%) Query: 1 MPQARTTLLLARSAAALLVLLASAEIGRRIADLPSLPALVDLQFDLTPRSQSFKVFEDNP 60 MP ARTT LL RSAAALLVLLA AEIGRRIADLPSLPALVDLQFD+TPRSQS+KVFE N Sbjct: 1 MPHARTTTLLTRSAAALLVLLAGAEIGRRIADLPSLPALVDLQFDITPRSQSYKVFEANR 60 Query: 61 IARSSHPQPLPTALRPLNIDVPWKDGKRLPLIDFIKGTAAHAFVVIQDGSVVYERYIDGY 120 IARS+HP+P P ALR L I VPWKDG +LP+IDF+K T+AHAFVVIQDG +VYERYIDGY Sbjct: 61 IARSTHPRPWPMALRALEISVPWKDGSQLPVIDFLKTTSAHAFVVIQDGKIVYERYIDGY 120 Query: 121 DANSRFTSFSVAKSFVSALTGVALKQGKIRSLNDPIGRYLKPDEISPAYANITIGQLLDM 180 DANSRFTSFSVAKSFVSALTGVAL+QGKIRSL++PIG YL DEI+PAYA ITIGQLLDM Sbjct: 121 DANSRFTSFSVAKSFVSALTGVALQQGKIRSLDEPIGHYLNSDEIAPAYAGITIGQLLDM 180 Query: 181 RSGIDVDENYGGSLASPVVRMFVSTDLQRFIARRSGLRFAPGSRFEYRSVDTLILSRVLA 240 RSGIDVDENYGGSLASPVVRMFVSTDL RFIARRSGLRFAPGSRFEYRSVDTL+LSRVLA Sbjct: 181 RSGIDVDENYGGSLASPVVRMFVSTDLHRFIARRSGLRFAPGSRFEYRSVDTLVLSRVLA 240 Query: 241 RATGMRLSDFAQQALWEPLGMEQDASWSVDSRQHGVEKAFCCLNTTARDFARLGLLYLHG 300 ATGMRLSDFAQQ LWEPLGMEQDASWSVDS QHGVEKAFCCLNTTARDFARLGLLYL G Sbjct: 241 HATGMRLSDFAQQVLWEPLGMEQDASWSVDSGQHGVEKAFCCLNTTARDFARLGLLYLDG 300 Query: 301 GRIGEQQIVSPAWAAEPRQPVNNGNALDYRDGWWIPPGNANDRDFSAIGVFGQYIYVNPA 360 GR+G+QQ+VSP+WA EPRQPVN+G LDYRDGWWIPPGNA+DRDFSAIGVFGQYIYVNPA Sbjct: 301 GRVGDQQVVSPSWAHEPRQPVNHGEVLDYRDGWWIPPGNADDRDFSAIGVFGQYIYVNPA 360 Query: 361 TRTVIVKLSDYGTEQDEVLTMLAMRSISHVVSSK 394 TRTVIVKLSDYG EQDEVLTMLAMRSISH V+ K Sbjct: 361 TRTVIVKLSDYGVEQDEVLTMLAMRSISHYVAGK 394 >ref|YP_002908345.1| beta-lactamase class C protein [Burkholderia glumae BGR1] gb|ACR31110.1| beta-lactamase class C protein [Burkholderia glumae BGR1] Length = 387 Score = 409 bits (1052), Expect = e-112, Method: Composition-based stats. Identities = 207/381 (54%), Positives = 269/381 (70%), Gaps = 6/381 (1%) Query: 15 AALLVLLASAEIGRRIADLPSLPALVDLQFDLTPRSQSFKVFEDNPIARSSHPQPLPTAL 74 A+L +L+ S + R LPS L+DL+F TP SQ+F++F++ + +S+ P L TA Sbjct: 13 ASLCLLIVSWNLLR----LPSPIVLLDLEFGWTPTSQTFRLFQNRLLEKSAQPLVLNTAE 68 Query: 75 RPLNIDVPWKDGKRLPLIDFIKGTAAHAFVVIQDGSVVYERYIDGYDANSRFTSFSVAKS 134 N V WK G + DF+K T AF+VIQDG + YERY +GY A S+F S+SVAKS Sbjct: 69 PRFNHAVTWK-GADSNVDDFLKNTQTRAFLVIQDGKIAYERYANGYSAASKFASYSVAKS 127 Query: 135 FVSALTGVALKQGKIRSLNDPIGRYLKPDEISPAYANITIGQLLDMRSGIDVDENYGGSL 194 FV+ + G AL G+I SL DPIG YL+P ++ Y +TI QLL MRSGID E+Y + Sbjct: 128 FVATMVGAALFDGRIHSLQDPIGNYLEPGDVREQYRRVTIEQLLSMRSGIDAAESYDSAF 187 Query: 195 ASPVVRMFVSTDLQRFIARRSGLRFAPGSRFEYRSVDTLILSRVLARATGMRLSDFAQQA 254 A PVV+M+++TDL RF++R SG R PG FEYRSVDTL+LS+VL RATG+ LS +AQQ Sbjct: 188 A-PVVQMYLTTDLNRFLSRVSGFRHPPGQEFEYRSVDTLVLSKVLTRATGVPLSAYAQQK 246 Query: 255 LWEPLGMEQDASWSVDSRQHGVEKAFCCLNTTARDFARLGLLYLHGGRIGEQQIVSPAWA 314 LW PLG DASWS+DS HGVEK+FCCLN TARDFA+LGLLYL G + +IVS WA Sbjct: 247 LWTPLGASSDASWSLDSATHGVEKSFCCLNATARDFAKLGLLYLAEGDLAGHRIVSRDWA 306 Query: 315 AEPRQPVNNGNALDYRDGWWIPPGNANDRDFSAIGVFGQYIYVNPATRTVIVKLSDYGTE 374 P + N +AL Y DGWWIPP + DRDF+AIG++GQ++YVNP+T T IVKLS+YG E Sbjct: 307 LAPGKSPNPTDALAYFDGWWIPPNHGRDRDFAAIGIYGQFVYVNPSTHTTIVKLSEYGAE 366 Query: 375 QDEVLTMLAMRSISHVVSSKE 395 QDE+ T+LAMR I+H +++ + Sbjct: 367 QDELDTLLAMRQIAHSITAAQ 387 >ref|YP_001754347.1| beta-lactamase [Methylobacterium radiotolerans JCM 2831] gb|ACB23664.1| beta-lactamase [Methylobacterium radiotolerans JCM 2831] Length = 410 Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 141/321 (43%), Positives = 192/321 (59%), Gaps = 6/321 (1%) Query: 70 LPTALRPLNIDVPWKDGKRLPLIDFIKGTAAHAFVVIQDGSVVYERYIDGYDANSRFTSF 129 LP RP+ VPWK GK +PL+ + T +AF+V+QDG +++E G + F S+ Sbjct: 79 LPVRPRPILDRVPWK-GKTVPLMTVLGATHTNAFLVLQDGVLIHEWQRAGTGPETLFPSW 137 Query: 130 SVAKSFVSALTGVALKQGKIRSLNDPIGRYLKPDEISPAYANITIGQLLDMRSGIDVDEN 189 SVAKS VS L G A+ +G++ D + L + IT+ LLDM SGI V EN Sbjct: 138 SVAKSVVSLLVGAAVARGQLAE-TDRVSTLLPELRNGAVFGQITVRNLLDMASGIAVPEN 196 Query: 190 YGGSLA-SPVVRMFVSTDLQRFIARRSGLRFAPGSRFEYRSVDTLILSRVLARATGMRLS 248 Y + M+++ DL F+ + L F PG++ YRS+DT +L +LAR G L+ Sbjct: 197 YDPRHPLTGTAGMYLTRDLTAFVRDNAHLAFKPGTKGRYRSIDTELLGLILARVEGKPLA 256 Query: 249 DFAQQALWEPLGMEQDASWSVDSRQHGVEKAFCCLNTTARDFARLGLLYLHGGRIGEQQI 308 D + +W+P+G + DA+W++D R G+EKAFCC+N TARDFARLGLL GR GE +I Sbjct: 257 DILSERIWKPMGAQADATWNLD-RPGGIEKAFCCINATARDFARLGLLVADQGRSGEHRI 315 Query: 309 VSPAWAAEPRQPVNNG-NALDYRDGWWIPPGNANDRDFSAIGVFGQYIYVNPATRTVIVK 367 + W P + Y WW PG +D D SAIGV+GQYIYVN AT TVIVK Sbjct: 316 IPGRWIERIMTPARRDVDGWQYSAQWWHAPGGEDD-DISAIGVYGQYIYVNRATGTVIVK 374 Query: 368 LSDYGTEQDEVLTMLAMRSIS 388 LSD+G EQDEV T+ M++I+ Sbjct: 375 LSDHGAEQDEVDTLAVMQAIA 395 >ref|ZP_00050900.1| COG1680: Beta-lactamase class C and other penicillin binding proteins [Magnetospirillum magnetotacticum MS-1] Length = 403 Score = 240 bits (613), Expect = 3e-61, Method: Composition-based stats. Identities = 144/341 (42%), Positives = 199/341 (58%), Gaps = 6/341 (1%) Query: 56 FEDNPIARSSHPQPLPTALRPLNIDVPWKDGKRLPLIDFIKGTAAHAFVVIQDGSVVYER 115 F + + + LP RP+ V WK GK +PL + T +AF+V QDG +++E Sbjct: 65 FPSRVVQAPTKARELPFRSRPILDRVVWK-GKTIPLGTVLDATHTNAFLVAQDGVLIHEW 123 Query: 116 YIDGYDANSRFTSFSVAKSFVSALTGVALKQGKIRSLNDPIGRYLKPDEISPAYANITIG 175 Y G D + F S+SVAKS VS L G A+ +GK+ S D + L ++ IT+ Sbjct: 124 YRSGRDEATLFPSWSVAKSIVSLLVGSAVARGKL-SETDKVSMLLPELRHPGVFSQITVR 182 Query: 176 QLLDMRSGIDVDENYGGSLA-SPVVRMFVSTDLQRFIARRSGLRFAPGSRFEYRSVDTLI 234 LLDM SGI V ENY S + M+++ D+ F+ + L F PGS YRS+DT + Sbjct: 183 NLLDMTSGIAVPENYDPSHPLTGTAGMYLTRDITAFVRDNAHLAFKPGSEGRYRSIDTEV 242 Query: 235 LSRVLARATGMRLSDFAQQALWEPLGMEQDASWSVDSRQHGVEKAFCCLNTTARDFARLG 294 L +LAR G L+D + +W+P+G + DA+W++D R GVEKAFCC+N TARDFARLG Sbjct: 243 LGLILARVEGKPLADLLSERIWKPIGAQADATWNLD-RPGGVEKAFCCINATARDFARLG 301 Query: 295 LLYLHGGRIGEQQIVSPAWAAEPRQPVNNG-NALDYRDGWWIPPGNANDRDFSAIGVFGQ 353 LL GR GE +IV W P + Y WW P + ++ D SAIGV+GQ Sbjct: 302 LLVADQGRAGEARIVPMRWIERISTPARRSVDGWRYSAQWWHAP-DGDEDDISAIGVYGQ 360 Query: 354 YIYVNPATRTVIVKLSDYGTEQDEVLTMLAMRSISHVVSSK 394 Y+YVN T TVIVKLSD+G EQDE T+ M++I+ +++K Sbjct: 361 YVYVNRNTGTVIVKLSDHGAEQDETDTLAVMQAIAADLAAK 401 >ref|YP_745258.1| beta-lactamase family protein [Granulibacter bethesdensis CGDNIH1] gb|ABI62335.1| beta-lactamase family protein [Granulibacter bethesdensis CGDNIH1] Length = 430 Score = 226 bits (576), Expect = 6e-57, Method: Composition-based stats. Identities = 139/354 (39%), Positives = 197/354 (55%), Gaps = 13/354 (3%) Query: 32 DLPSLPALVDLQFDLTPRSQSFKVFEDNPIARSSHPQPLPTALRPLNIDVPWKDGKRLPL 91 ++P L L F SQ +F I SS+P+P RP VPWK G+++ + Sbjct: 74 NMPDPVTLARLAF--VEPSQRGTLFASREIPPSSYPRPFQENFRPWIKTVPWK-GQQVSV 130 Query: 92 IDFIKGTAAHAFVVIQDGSVVYERYIDGYDANSRFTSFSVAKSFVSALTGVALKQGKIRS 151 F+ T +A VV+ +G + E Y DG N+ F S+S+AKS VS + G A+ +G + Sbjct: 131 QQFLDTTRTNAIVVVNEGVITQEWYRDGMGPNTLFPSWSLAKSIVSLMVGQAIGRGLLHE 190 Query: 152 LNDPIGRY--LKPDEISPAYANITIGQLLDMRSGIDVDENYGGSLA-SPVVRMFVSTDLQ 208 + P L+ I P IT+ LLDM SG+ + ENY M+++ DL Sbjct: 191 DDRPEALLPNLQKAGIDP---RITVRNLLDMTSGLAIPENYNPWRPFRGTAGMYLTHDLG 247 Query: 209 RFIARRSGLRFAPGSRFEYRSVDTLILSRVLARATGMRLSDFAQQALWEPLGMEQDASWS 268 +I L F PGS+ YRSVDT IL +L+R + LS+ + +W+P+G ++ A W+ Sbjct: 248 AYIRAHHSLAFTPGSKGVYRSVDTEILGLILSRVEHLTLSEILSKGIWDPIGAKRAAYWN 307 Query: 269 VDSRQHGVEKAFCCLNTTARDFARLGLLYLHGGRIGEQQIVSPAWAAEPRQPV-NNGNAL 327 +D G EKAFCC+N ARDFA++G L L GR+G +QIV W +P + L Sbjct: 308 LD-HPGGREKAFCCINAAARDFAKIGQLVLDRGRVGNRQIVPEFWIERLYKPAPARVDGL 366 Query: 328 DYRDGWWIPPGNANDRDFSAIGVFGQYIYVNPATRTVIVKLSDYGTEQDEVLTM 381 +Y WW + N D SAIGV+GQYIYV+P +R+V+VKLSDYG EQDE T+ Sbjct: 367 EYSAQWWHTESDIN--DISAIGVYGQYIYVDPVSRSVVVKLSDYGAEQDEAETL 418