BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5310.p (490 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777552.1| branched-chain amino acid ABC transporter pe... 762 0.0 ref|YP_004754658.1| ABC transporter periplasmic protein [Collimo... 620 e-175 ref|YP_001354873.1| ABC-type branched-chain amino acid transport... 601 e-169 ref|ZP_08274569.1| ABC-type transporter, periplasmic component: ... 583 e-164 ref|YP_583075.1| HAAT family ABC transporter periplasmic protein... 583 e-164 >ref|YP_003777552.1| branched-chain amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ65644.1| ABC-type branched-chain amino acid transport system, periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 430 Score = 762 bits (1968), Expect = 0.0, Method: Composition-based stats. Identities = 379/397 (95%), Positives = 388/397 (97%) Query: 94 VRIGMIDGLSGPFANAGEAVVRNISYAIERVNARGGVNLPDGKHLLQLSTFDNKLGVEDS 153 +RIGMIDGLSGPFANAGEAVVRNISYAIERVNARGGV LPDGKHLLQLSTFDNKLGVEDS Sbjct: 34 IRIGMIDGLSGPFANAGEAVVRNISYAIERVNARGGVTLPDGKHLLQLSTFDNKLGVEDS 93 Query: 154 LVQFRQLTDERIPFLIEGNSSAVAAALIDAVNKHNQREPDRRVLFLNYSAVDPTLTNEKC 213 LVQFRQLTDERIPFLIEGNSSAVAAALIDAVNKHNQREPDRRVLFLNYSAVDPTLTNEKC Sbjct: 94 LVQFRQLTDERIPFLIEGNSSAVAAALIDAVNKHNQREPDRRVLFLNYSAVDPTLTNEKC 153 Query: 214 SFWHFRFDASADMRMQALTEAIKADPATKKVYLIGQDYSFGRQVAKAAREQITAKRPDIA 273 SFWHFRFDASADMRMQALTEAIKAD AT+KVYLIGQDYSFGRQVAKAAREQ+ AKRPDIA Sbjct: 154 SFWHFRFDASADMRMQALTEAIKADTATRKVYLIGQDYSFGRQVAKAAREQLAAKRPDIA 213 Query: 274 IVGDELHPIGKIKDFAPYIAKMRSAGADAVITGNWGNDLTLLVKAARDAGFKAKFYTFYA 333 IVGDELHPIGKIKDFAPYIAKMRSAGADAVITGNWGNDLTLLVKAARDAGFKAKFYTFYA Sbjct: 214 IVGDELHPIGKIKDFAPYIAKMRSAGADAVITGNWGNDLTLLVKAARDAGFKAKFYTFYA 273 Query: 334 NSLGAPAAIGEAGVGVVRAVAEWHPNAGGNPGSPSDAYYQEFRKRYPQPKDDYLYLRMQV 393 NSLGAPAAIGEAGVGVVRAVAEWHPNAGGNPGSPSDAYYQ FR+RYPQPKDDYLYLRMQV Sbjct: 274 NSLGAPAAIGEAGVGVVRAVAEWHPNAGGNPGSPSDAYYQAFRQRYPQPKDDYLYLRMQV 333 Query: 394 MIDMLVKAIEKARSTDPKAVAYALEGAHYQNAFHEATLRAEDHQLIQPLYLMQMQRADSG 453 MIDML KAIEKA S DPKAVAYALEGA YQ+AFH AT+RA+DHQLIQPLYLMQMQRADSG Sbjct: 334 MIDMLAKAIEKAGSADPKAVAYALEGAQYQSAFHSATMRAQDHQLIQPLYLMQMQRADSG 393 Query: 454 GIRFDNEGSGFGFRTERFIPAEQTALPSTCRMQRPPR 490 GIRFDNEGSG+GFRTERFIPAEQTALPS+CRMQRPPR Sbjct: 394 GIRFDNEGSGYGFRTERFIPAEQTALPSSCRMQRPPR 430 >ref|YP_004754658.1| ABC transporter periplasmic protein [Collimonas fungivorans Ter331] gb|AAT42386.1| ABC-type branched-chain amino acid transport system, periplasmic component [Collimonas fungivorans Ter331] gb|AEK63835.1| ABC-type transporter, periplasmic component: HAAT family [Collimonas fungivorans Ter331] Length = 456 Score = 620 bits (1599), Expect = e-175, Method: Composition-based stats. Identities = 304/404 (75%), Positives = 348/404 (86%), Gaps = 5/404 (1%) Query: 88 AAP--LPPVRIGMIDGLSGPFANAGEAVVRNISYAIERVNARGGVNLPDGKHLLQLSTFD 145 AAP LPP+R+GMI+G+SGPFANAGEAV RNI +A+E+VNARGGV LPDGKHLL L+ FD Sbjct: 55 AAPGDLPPIRLGMIEGMSGPFANAGEAVERNIRFAVEQVNARGGVRLPDGKHLLSLTVFD 114 Query: 146 NKLGVEDSLVQFRQLTDERIPFLIEGNSSAVAAALIDAVNKHNQREPDRRVLFLNYSAVD 205 NK GVED+L+Q +QLTD++IPF++EGNSSAVA AL++A+NKHN R PD RVLFLNYSAVD Sbjct: 115 NKQGVEDALLQLKQLTDQKIPFVLEGNSSAVAGALVEAINKHNVRSPDNRVLFLNYSAVD 174 Query: 206 PTLTNEKCSFWHFRFDASADMRMQALTEAIKADPATKKVYLIGQDYSFGRQVAKAAREQI 265 P LTNEKCSFWHFRFDA+ADMRMQAL + IK+D K VYLIGQDYSFG+QVAKAAR Q+ Sbjct: 175 PVLTNEKCSFWHFRFDANADMRMQALVDVIKSDGKAKSVYLIGQDYSFGQQVAKAARRQL 234 Query: 266 TAKRPDIAIVGDELHPIGKIKDFAPYIAKMRSAGADAVITGNWGNDLTLLVKAARDAGFK 325 A RPDI IVGDELHPIGK+KDFAPYIAK+R++GAD VITGNWGNDLTLLVKAA++AG + Sbjct: 235 QAARPDIRIVGDELHPIGKVKDFAPYIAKIRASGADTVITGNWGNDLTLLVKAAKEAGLR 294 Query: 326 AKFYTFYANSLGAPAAIGEAGVGVVRAVAEWHPNA-GGNPGSPSDAYYQEFRKRYPQPKD 384 KFYTFY NSLGAPAAIGEAGVG VRAVAEWHPNA GN + SDA+Y+ FR+RYPQPKD Sbjct: 295 LKFYTFYGNSLGAPAAIGEAGVGTVRAVAEWHPNAVDGN--AASDAFYRSFRQRYPQPKD 352 Query: 385 DYLYLRMQVMIDMLVKAIEKARSTDPKAVAYALEGAHYQNAFHEATLRAEDHQLIQPLYL 444 DYL+LRM VMIDML AIEKA STD AVA ALEGA Y++ FHEA++RA DHQLIQPLY+ Sbjct: 353 DYLFLRMDVMIDMLAAAIEKAGSTDAIAVARALEGARYKSKFHEASMRASDHQLIQPLYV 412 Query: 445 MQMQRADSGGIRFDNEGSGFGFRTERFIPAEQTALPSTCRMQRP 488 MQR GGIRFDNEGSG+GF+TER++ TA STCRMQRP Sbjct: 413 AVMQRLADGGIRFDNEGSGYGFKTERYLAPAATAAASTCRMQRP 456 >ref|YP_001354873.1| ABC-type branched-chain amino acid transport systems, periplasmic component [Janthinobacterium sp. Marseille] gb|ABR89963.1| ABC-type branched-chain amino acid transport systems, periplasmic component [Janthinobacterium sp. Marseille] Length = 423 Score = 601 bits (1549), Expect = e-169, Method: Composition-based stats. Identities = 301/415 (72%), Positives = 348/415 (83%), Gaps = 1/415 (0%) Query: 77 LAAVSTPVCSVAAPLPPVRIGMIDGLSGPFANAGEAVVRNISYAIERVNARGGVNLPDGK 136 LA V VCSVA P+RIGMIDG+SG FANAGEAVVRN+ AI+ VNARGGV LPDG Sbjct: 9 LATVLLCVCSVAQAAEPIRIGMIDGMSGAFANAGEAVVRNLQLAIDAVNARGGVRLPDGA 68 Query: 137 HLLQLSTFDNKLGVEDSLVQFRQLTDERIPFLIEGNSSAVAAALIDAVNKHNQREPDRRV 196 H L L FDNK GVE+SL++F++L D+RIPF+++GNSSAVAAAL+DAVNKHNQR D RV Sbjct: 69 HPLALEIFDNKSGVEESLLEFKRLADQRIPFMVQGNSSAVAAALLDAVNKHNQRASDNRV 128 Query: 197 LFLNYSAVDPTLTNEKCSFWHFRFDASADMRMQALTEAIKADPATKKVYLIGQDYSFGRQ 256 LFLNYSAVDP LTNEKCS+WHFRFDA+ADMRM ALTE IK D K+VYLIGQDYSFGR Sbjct: 129 LFLNYSAVDPALTNEKCSYWHFRFDANADMRMHALTEVIKRDARAKRVYLIGQDYSFGRL 188 Query: 257 VAKAAREQITAKRPDIAIVGDELHPIGKIKDFAPYIAKMRSAGADAVITGNWGNDLTLLV 316 VA+AAR Q+ AKRPDI IVGDELHPIGKIKDFAPYIAK++++GADAVI+GNWGNDLTLLV Sbjct: 189 VAQAARTQLAAKRPDIQIVGDELHPIGKIKDFAPYIAKIKASGADAVISGNWGNDLTLLV 248 Query: 317 KAARDAGFKAKFYTFYANSLGAPAAIGEAGVGVVRAVAEWHPNAG-GNPGSPSDAYYQEF 375 KAA++ G KFYTFY N LGAPAAIG+AGV VRAVAEWHPN G G S S +Y F Sbjct: 249 KAAKEFGLNTKFYTFYGNGLGAPAAIGDAGVDRVRAVAEWHPNVGDGMADSASGRFYSAF 308 Query: 376 RKRYPQPKDDYLYLRMQVMIDMLVKAIEKARSTDPKAVAYALEGAHYQNAFHEATLRAED 435 R+RYPQPKDDY++LRM +MI+ML AIEKARSTD +AVA ALEGAHY+NAFH+AT+RA D Sbjct: 309 RQRYPQPKDDYVHLRMHIMIEMLATAIEKARSTDARAVAQALEGAHYRNAFHDATMRASD 368 Query: 436 HQLIQPLYLMQMQRADSGGIRFDNEGSGFGFRTERFIPAEQTALPSTCRMQRPPR 490 HQLIQPLY+ M+R GG+RFDNEGSG+GF+TE ++PA TALP++CR+QRP R Sbjct: 369 HQLIQPLYVSVMRRKSDGGMRFDNEGSGYGFKTELYLPAASTALPTSCRLQRPLR 423 >ref|ZP_08274569.1| ABC-type transporter, periplasmic component: HAAT family [Oxalobacteraceae bacterium IMCC9480] gb|EGF31955.1| ABC-type transporter, periplasmic component: HAAT family [Oxalobacteraceae bacterium IMCC9480] Length = 419 Score = 583 bits (1502), Expect = e-164, Method: Composition-based stats. Identities = 284/424 (66%), Positives = 338/424 (79%), Gaps = 7/424 (1%) Query: 64 RLPLRMFPAALLALAAVSTPVCSVAAPLPPVRIGMIDGLSGPFANAGEAVVRNISYAIER 123 R P+R LL A +S + A LP +RI MI+G+SGPFANAG+AV RN+ AIE Sbjct: 2 RSPIRH----LLLAACLSGFGATTQAALPAIRIAMIEGMSGPFANAGDAVQRNVQLAIEV 57 Query: 124 VNARGGVNLPDGKHLLQLSTFDNKLGVEDSLVQFRQLTDERIPFLIEGNSSAVAAALIDA 183 VNARGGV L DG+HLL+LS DNK +++SL+ R +TD IPF+++GNSSAVAA LIDA Sbjct: 58 VNARGGVRLKDGRHLLELSVLDNKQTIDESLIALRHVTDRHIPFVLQGNSSAVAAGLIDA 117 Query: 184 VNKHNQREPDRRVLFLNYSAVDPTLTNEKCSFWHFRFDASADMRMQALTEAIKADPATKK 243 +NKHN+R PD R+LFLNYSAVDP LTNEKCSFWHFRFDA+ADMRMQALT+ I+ D K Sbjct: 118 INKHNERSPDNRLLFLNYSAVDPVLTNEKCSFWHFRFDANADMRMQALTDVIEGDSRASK 177 Query: 244 VYLIGQDYSFGRQVAKAAREQITAKRPDIAIVGDELHPIGKIKDFAPYIAKMRSAGADAV 303 VYLIGQDYSFG QVA AAR + AKRPDI IVGDE HPIGK+KDF+PY AK+R++GAD V Sbjct: 178 VYLIGQDYSFGHQVATAARSMLAAKRPDIRIVGDEFHPIGKVKDFSPYAAKIRASGADTV 237 Query: 304 ITGNWGNDLTLLVKAARDAGFKAKFYTFYANSLGAPAAIGEAGVGVVRAVAEWHPNAGGN 363 ITGNWGNDLTLLVKAAR++G KFYTFY N LGAPAAIG+AGVG VRAVAEWHPN G Sbjct: 238 ITGNWGNDLTLLVKAARESGLNLKFYTFYGNGLGAPAAIGDAGVGRVRAVAEWHPNVG-- 295 Query: 364 PGSPSDAYYQEFRKRYPQPKDDYLYLRMQVMIDMLVKAIEKARSTDPKAVAYALEGAHYQ 423 G+ SDA+YQ FR+R+PQP+DDY++LRM+VMI+ML AIE+A ST+ VA ALEGA + Sbjct: 296 -GAASDAFYQSFRQRFPQPQDDYVHLRMRVMIEMLASAIERAGSTEAARVATALEGARFA 354 Query: 424 NAFHEATLRAEDHQLIQPLYLMQMQRADSGGIRFDNEGSGFGFRTERFIPAEQTALPSTC 483 N FH+AT+RA DHQL+QPLY+ MQ+ GG+RFDNEGSG+GFRTER++P TA PSTC Sbjct: 355 NGFHDATMRAADHQLLQPLYVSVMQKQGEGGVRFDNEGSGYGFRTERYLPMPATAQPSTC 414 Query: 484 RMQR 487 M R Sbjct: 415 TMTR 418 >ref|YP_583075.1| HAAT family ABC transporter periplasmic protein [Cupriavidus metallidurans CH34] gb|ABF07806.1| ABC-type transporter, periplasmic component: HAAT family [Cupriavidus metallidurans CH34] Length = 417 Score = 583 bits (1502), Expect = e-164, Method: Composition-based stats. Identities = 278/398 (69%), Positives = 335/398 (84%), Gaps = 4/398 (1%) Query: 93 PVRIGMIDGLSGPFANAGEAVVRNISYAIERVNARGGVNLPDGKHLLQLSTFDNKLGVED 152 P+R+GMIDGLSGPFANAGEAVVRN+ AIERVNA GGV LPDG H +L TFD+K V++ Sbjct: 23 PIRLGMIDGLSGPFANAGEAVVRNLRIAIERVNASGGVKLPDGPHPFELVTFDSKGNVDE 82 Query: 153 SLVQFRQLTDERIPFLIEGNSSAVAAALIDAVNKHNQREPDRRVLFLNYSAVDPTLTNEK 212 SL+QFR L D+RIPF+++GNSSAVA+AL+ A+N+ N R+PD RVLFLNYSAVDP+LTNE Sbjct: 83 SLIQFRSLVDKRIPFVLQGNSSAVASALVGAINRQNARQPDARVLFLNYSAVDPSLTNEN 142 Query: 213 CSFWHFRFDASADMRMQALTEAIKADPATKKVYLIGQDYSFGRQVAKAAREQITAKRPDI 272 CSFWHFRFDASADMRMQALTEAI+++ + +KVYLI QDYSFG QVA++ARE + KRPDI Sbjct: 143 CSFWHFRFDASADMRMQALTEAIRSERSVRKVYLIDQDYSFGHQVARSAREMLATKRPDI 202 Query: 273 AIVGDELHPIGKIKDFAPYIAKMRSAGADAVITGNWGNDLTLLVKAARDAGFKAKFYTFY 332 IVGDE HPIGKIKDFAPYIAK++++GADAVITGNWGNDLTL+VKAAR+ G A+FYTFY Sbjct: 203 QIVGDEFHPIGKIKDFAPYIAKIKASGADAVITGNWGNDLTLMVKAAREGGLNARFYTFY 262 Query: 333 ANSLGAPAAIGEAGVGVVRAVAEWHPNAGGNPGSPSDAYYQEFRKRYPQPKDDYLYLRMQ 392 N LGAPAA+G+AGVG V AVAEWHPN G G+ SDA+YQ FR RYP P+DDY++LRMQ Sbjct: 263 GNGLGAPAAMGDAGVGRVLAVAEWHPNVG---GAASDAFYQSFRARYPDPRDDYVHLRMQ 319 Query: 393 VMIDMLVKAIEKARSTDPKAVAYALEGAHYQNAFHEATLRAEDHQLIQPLYLMQMQRADS 452 +M++ML +AIE+A STD AV YALE + NAFHEAT+RAEDHQ++QPLY+ M + Sbjct: 320 MMVEMLARAIERAGSTDAVAVGYALEDMRFTNAFHEATVRAEDHQVLQPLYVSVMAKR-G 378 Query: 453 GGIRFDNEGSGFGFRTERFIPAEQTALPSTCRMQRPPR 490 G +RFDNEGSG+GFRT + + QT LP+TCRM+RPPR Sbjct: 379 GDVRFDNEGSGYGFRTIKKLKTAQTTLPTTCRMERPPR 416