BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5309.p (290 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777551.1| hypothetical protein Hsero_4173 [Herbaspiril... 217 2e-54 ref|YP_004754657.1| hypothetical protein CFU_4012 [Collimonas fu... 101 1e-19 gb|AAT42410.1| Tfp pilus assembly protein FimV [Collimonas fungi... 100 4e-19 ref|ZP_08274568.1| hypothetical protein IMCC9480_3140 [Oxalobact... 75 8e-12 ref|YP_003746946.1| hypothetical protein RCFBP_21186 [Ralstonia ... 59 7e-07 >ref|YP_003777551.1| hypothetical protein Hsero_4173 [Herbaspirillum seropedicae SmR1] gb|ADJ65643.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 286 Score = 217 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 214/294 (72%), Positives = 231/294 (78%), Gaps = 12/294 (4%) Query: 1 MLNHEQMPGAGSVADTIDFMKKMWSSMGAPAMATPSLSVEDINKKISDLKTVASWLELNL 60 MLN ++MPGAGSV DT++FMK MWSSMGAPAMATPSLSVEDINKKI DLKTVASWLELNL Sbjct: 1 MLNQDKMPGAGSVGDTLEFMKNMWSSMGAPAMATPSLSVEDINKKIGDLKTVASWLELNL 60 Query: 61 NMLKATIQTLEVQSATLSTLQAMSEIMASRGTPQAEAAAEEEGSAAPAFPFGFPMWPGAG 120 NMLKATIQTLEVQSATLSTLQAMS IMAS+ P A+ AA EEG AA FPFGFPMWPGAG Sbjct: 61 NMLKATIQTLEVQSATLSTLQAMSAIMASQQAP-ADDAAPEEGKAASPFPFGFPMWPGAG 119 Query: 121 AQPEEAPEEEEEPASAPEVAEEQAAA----PQADAEPAAEAEGSVPPAPDFQSAIANPNA 176 A + +EEPA A +VAEEQ + A PA EA+ APD Q+A+ANPNA Sbjct: 120 A----SQAADEEPAGAQDVAEEQEEPQDELQEEAAAPAGEADAPAAEAPDLQAAMANPNA 175 Query: 177 WWNVLQEQFKHAVGNALAGGLAEQEPLLKPAKPPKPEKAPKRSENKTVAPKPKAGVKAKP 236 WWN+LQ+QFK AVGNALAGG EQE KP KP KAPKRSENKTVA KPKA K +P Sbjct: 176 WWNLLQDQFKQAVGNALAGGQPEQE---PLLKPAKPPKAPKRSENKTVAAKPKAAPKVRP 232 Query: 237 AGAPKPAKGAKAAPKKPPVKKAPKRAENTSAPARTAVVQSRQNKKPASRKPNSP 290 AGAPK K AK APKKPPVKKAP+ A NTSAP RTAVVQSRQNKKPASRKP SP Sbjct: 233 AGAPKAGKAAKPAPKKPPVKKAPRSAANTSAPGRTAVVQSRQNKKPASRKPTSP 286 >ref|YP_004754657.1| hypothetical protein CFU_4012 [Collimonas fungivorans Ter331] gb|AEK63834.1| hypothetical protein CFU_4012 [Collimonas fungivorans Ter331] Length = 232 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 92/232 (39%), Positives = 124/232 (53%), Gaps = 29/232 (12%) Query: 1 MLNHEQMPGAGSVADTIDFMKKMWSSMGAPAMATPSLSVEDINKKISDLKTVASWLELNL 60 M++ +PGA ++ D+++F+KKMW MG P M P+LSVE+INKKISDLK V SWL LNL Sbjct: 1 MMSRSSIPGADAMQDSLEFIKKMWGGMGVPGMVVPTLSVEEINKKISDLKAVESWLNLNL 60 Query: 61 NMLKATIQTLEVQSATLSTLQAMSEIMASRGTPQAEAAAEEEGSA---APAFPFGFPMWP 117 NML+ TIQ LEVQS T+S LQAM+ + + Q ++ AE SA A FPF F Sbjct: 61 NMLRTTIQALEVQSGTISALQAMASVNQAGTERQGDSDAEPNASAWASAAGFPFSF---- 116 Query: 118 GAGAQPEEAPEEEEEPASAPEVAEEQAAAPQADAEPAAEAEGSVPPAPDFQSAIANPNAW 177 + A A+ P E+ AP + AEP ++ N NAW Sbjct: 117 -MNPAQDSAAPPASAQAAQPATETEKPPAPSSAAEP----------------SLGNSNAW 159 Query: 178 WNVLQEQFKHAVGNALAGGLAEQEPLLKPAKPPKPEKAPKRSENKTVAPKPK 229 W++LQ QFK AV + +A E ++ PAK K +S +K K Sbjct: 160 WDLLQNQFKQAVNS-----VAAAENMVMPAKTAAKVKPAAKSGSKASGAASK 206 >gb|AAT42410.1| Tfp pilus assembly protein FimV [Collimonas fungivorans Ter331] Length = 231 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 91/231 (39%), Positives = 123/231 (53%), Gaps = 29/231 (12%) Query: 2 LNHEQMPGAGSVADTIDFMKKMWSSMGAPAMATPSLSVEDINKKISDLKTVASWLELNLN 61 ++ +PGA ++ D+++F+KKMW MG P M P+LSVE+INKKISDLK V SWL LNLN Sbjct: 1 MSRSSIPGADAMQDSLEFIKKMWGGMGVPGMVVPTLSVEEINKKISDLKAVESWLNLNLN 60 Query: 62 MLKATIQTLEVQSATLSTLQAMSEIMASRGTPQAEAAAEEEGSA---APAFPFGFPMWPG 118 ML+ TIQ LEVQS T+S LQAM+ + + Q ++ AE SA A FPF F Sbjct: 61 MLRTTIQALEVQSGTISALQAMASVNQAGTERQGDSDAEPNASAWASAAGFPFSF----- 115 Query: 119 AGAQPEEAPEEEEEPASAPEVAEEQAAAPQADAEPAAEAEGSVPPAPDFQSAIANPNAWW 178 + A A+ P E+ AP + AEP ++ N NAWW Sbjct: 116 MNPAQDSAAPPASAQAAQPATETEKPPAPSSAAEP----------------SLGNSNAWW 159 Query: 179 NVLQEQFKHAVGNALAGGLAEQEPLLKPAKPPKPEKAPKRSENKTVAPKPK 229 ++LQ QFK AV + +A E ++ PAK K +S +K K Sbjct: 160 DLLQNQFKQAVNS-----VAAAENMVMPAKTAAKVKPAAKSGSKASGAASK 205 >ref|ZP_08274568.1| hypothetical protein IMCC9480_3140 [Oxalobacteraceae bacterium IMCC9480] gb|EGF31954.1| hypothetical protein IMCC9480_3140 [Oxalobacteraceae bacterium IMCC9480] Length = 193 Score = 75.5 bits (184), Expect = 8e-12, Method: Composition-based stats. Identities = 74/192 (38%), Positives = 97/192 (50%), Gaps = 44/192 (22%) Query: 7 MPGAGSVADTIDFMKKMWSSM-----GAPAMATPSLSVEDINKKISDLKTVASWLELNLN 61 MPGAG++ DT++FM+K+W + P M P+LS+E+INK+I+DLK V SWL LN+N Sbjct: 4 MPGAGAMTDTLEFMQKLWGGVTLPGASMPGMVMPTLSLEEINKQITDLKAVESWLTLNMN 63 Query: 62 MLKATIQTLEVQSATLSTLQAMSEIMASRGTPQAEAAAEEEGSAAPAFPFGFPMWPGAGA 121 ML TI+ LEVQSAT+STLQ+MS ++ P P A A Sbjct: 64 MLGGTIKALEVQSATISTLQSMSANFSAAMKPTE---------------------PDAPA 102 Query: 122 QPEEAPEEEEEPASAPEVAEEQAAAPQADAEPAAEAEGSVPPAPDFQSAIANPNAWWNVL 181 QP +P E A+A A A P NAWW +L Sbjct: 103 QP--SPYEAFFKATAAPATATAPAPEAPAAAPPMANP----------------NAWWTML 144 Query: 182 QEQFKHAVGNAL 193 QEQF+ AV NA+ Sbjct: 145 QEQFQQAVANAI 156 >ref|YP_003746946.1| hypothetical protein RCFBP_21186 [Ralstonia solanacearum CFBP2957] emb|CBJ44364.1| conserved protein of unknown function [Ralstonia solanacearum CFBP2957] Length = 297 Score = 59.3 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 53/155 (34%), Positives = 77/155 (49%), Gaps = 7/155 (4%) Query: 33 ATPSLSVEDINKKISDLKTVASWLELNLNMLKATIQTLEVQSATLSTLQAMSEIMASRGT 92 A P + +E+++K+I DL+ V SWL+LN ++L+ IQ LEVQ ATL LQ ++ Sbjct: 39 AAPPMDLEELDKRIHDLRAVESWLQLNASLLRTAIQGLEVQRATLVALQTFGSALSPEAM 98 Query: 93 PQAEAAAEEEGSAAPAFPFGFPMWPGAGAQPEEAPEEEEEPASAPEVAEEQAAAPQADAE 152 A AAP P P+WP + AP + E P + + + E A A AE Sbjct: 99 RTAFDNLSGTEGAAPE-PESKPVWPHTFTAAKPAPTQAEAPPAKDKASAEAEAEAAAQAE 157 Query: 153 PAAEAEGSVPPAPDFQSAIANPNAWWNVLQEQFKH 187 A A +A +P+ WWN+LQ+QF Sbjct: 158 AQARAAAQA------AAAALDPSPWWNLLQQQFSQ 186