BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5304.p (325 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777547.1| ABC transporter periplasmic protein [Herbasp... 511 e-143 ref|YP_786983.1| hypothetical protein BAV2471 [Bordetella avium ... 411 e-113 ref|NP_889890.1| hypothetical protein BB3356 [Bordetella bronchi... 410 e-112 ref|ZP_07676708.1| ABC transporter [Ralstonia sp. 5_7_47FAA] >gi... 409 e-112 ref|NP_880732.1| hypothetical protein BP2068 [Bordetella pertuss... 407 e-111 >ref|YP_003777547.1| ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] emb|CAP19661.2| periplasmic component protein [Herbaspirillum seropedicae] gb|ADJ65639.1| ABC-type uncharacterized transport system, periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 326 Score = 511 bits (1316), Expect = e-143, Method: Composition-based stats. Identities = 314/325 (96%), Positives = 319/325 (98%) Query: 1 MSYNNKLTLRAMVAALSLAAVCAAPAMAADKSVAVTAIVEHPALDAVRDGVKDELKEEGF 60 MSYNNKLTLRAMVAALSLAAVC+APAMAADKSVAVTAIVEHPALDAVRDGVKDELKEEGF Sbjct: 1 MSYNNKLTLRAMVAALSLAAVCSAPAMAADKSVAVTAIVEHPALDAVRDGVKDELKEEGF 60 Query: 61 EAGKNLKWEYQSAQGNTGTAAQIARKFVGDKPDVIVAIATPSAQALVSATKSIPVVYSGV 120 EAGKNLKWEYQSAQGNTGTAAQIARKFVGDKPD IVAIATPSAQALV+ATKSIPVVYSGV Sbjct: 61 EAGKNLKWEYQSAQGNTGTAAQIARKFVGDKPDAIVAIATPSAQALVAATKSIPVVYSGV 120 Query: 121 TDPVAAQLVKDWKASGTNVTGVSDLLELDKQIDLIKRVVPNAKRVGMVYNPGEANSAVVV 180 TDPVAAQLVKDWKASGTNVTGVSDLLELDKQ+DLIKRVVPNAKRVGMVYNPGEANSAVVV Sbjct: 121 TDPVAAQLVKDWKASGTNVTGVSDLLELDKQVDLIKRVVPNAKRVGMVYNPGEANSAVVV 180 Query: 181 KALKELLAKSNMTLVEAAAPRSVDVGSAAKSLIGKVDVIYTNTDNNVVSAYEALVKVGND 240 KALKELLAKSNMTLVEAAAPRSVDVGSAAKSLIGKVDVIYTNTDNNVVSAYEALVKVGND Sbjct: 181 KALKELLAKSNMTLVEAAAPRSVDVGSAAKSLIGKVDVIYTNTDNNVVSAYEALVKVGND 240 Query: 241 AKIPLVASDTDSVKRGAIAALGVNYYDLGRQTGKVVARILKGEKPGDIASATSSKLELFV 300 AKIPLVASDTDSVKRGAIAALGVNYYDLGRQTGKVV RILKGEKPGDI SATSSKLELFV Sbjct: 241 AKIPLVASDTDSVKRGAIAALGVNYYDLGRQTGKVVGRILKGEKPGDIPSATSSKLELFV 300 Query: 301 NTAAAQKQGVTLLADLIKSAKTVIK 325 NTAAAQKQGVTL +L+ SAKTVIK Sbjct: 301 NTAAAQKQGVTLSPELVNSAKTVIK 325 >ref|YP_786983.1| hypothetical protein BAV2471 [Bordetella avium 197N] emb|CAJ50081.1| putative exported protein [Bordetella avium 197N] Length = 322 Score = 411 bits (1056), Expect = e-113, Method: Composition-based stats. Identities = 246/295 (83%), Positives = 267/295 (90%) Query: 31 KSVAVTAIVEHPALDAVRDGVKDELKEEGFEAGKNLKWEYQSAQGNTGTAAQIARKFVGD 90 KSVAVTAIVEHPALDAVRDGV++ LK+ G++A KNLKW+YQSAQGNTGTAAQIARKFVGD Sbjct: 28 KSVAVTAIVEHPALDAVRDGVREALKQAGYDADKNLKWQYQSAQGNTGTAAQIARKFVGD 87 Query: 91 KPDVIVAIATPSAQALVSATKSIPVVYSGVTDPVAAQLVKDWKASGTNVTGVSDLLELDK 150 KPDVIVAIATPSAQA+V+ATKS+PVVYS VTDPVAAQLV SGTNVTGVSDLL LDK Sbjct: 88 KPDVIVAIATPSAQAVVAATKSVPVVYSAVTDPVAAQLVPTMGPSGTNVTGVSDLLALDK 147 Query: 151 QIDLIKRVVPNAKRVGMVYNPGEANSAVVVKALKELLAKSNMTLVEAAAPRSVDVGSAAK 210 QIDLIK+VVP+AKRVGMVYNPGEANS VVVK L+ELL K +TLVEAAAPR+VDVGSAA+ Sbjct: 148 QIDLIKKVVPDAKRVGMVYNPGEANSVVVVKQLQELLPKHGLTLVEAAAPRTVDVGSAAR 207 Query: 211 SLIGKVDVIYTNTDNNVVSAYEALVKVGNDAKIPLVASDTDSVKRGAIAALGVNYYDLGR 270 SLIGKVDVIYTNTDNNVVSAYEALVKVGNDAKIPL+ASDTDSVKRGAIAALG+NY DLG Sbjct: 208 SLIGKVDVIYTNTDNNVVSAYEALVKVGNDAKIPLIASDTDSVKRGAIAALGINYRDLGV 267 Query: 271 QTGKVVARILKGEKPGDIASATSSKLELFVNTAAAQKQGVTLLADLIKSAKTVIK 325 QTGK+ RILKGEKPGDIAS TS+KLEL+VN AA KQGVTL L+KSA VIK Sbjct: 268 QTGKIAVRILKGEKPGDIASETSNKLELYVNPDAAAKQGVTLPESLLKSAAQVIK 322 >ref|NP_889890.1| hypothetical protein BB3356 [Bordetella bronchiseptica RB50] emb|CAE33848.1| putative exported protein [Bordetella bronchiseptica RB50] Length = 324 Score = 410 bits (1054), Expect = e-112, Method: Composition-based stats. Identities = 252/314 (80%), Positives = 280/314 (89%), Gaps = 1/314 (0%) Query: 13 VAALSLA-AVCAAPAMAADKSVAVTAIVEHPALDAVRDGVKDELKEEGFEAGKNLKWEYQ 71 V AL+LA A+ AAP MA KSVA+TAIVEHPALD+VRDGV+D LK+ G+E+GKNLKW+YQ Sbjct: 11 VGALALAMAIHAAPVMAQQKSVAITAIVEHPALDSVRDGVQDALKQAGYESGKNLKWQYQ 70 Query: 72 SAQGNTGTAAQIARKFVGDKPDVIVAIATPSAQALVSATKSIPVVYSGVTDPVAAQLVKD 131 SAQGNTGTAAQIARKFVGD+PDVIVAIATPSAQA+V+ATK +PVVYS VTDPVAAQLV Sbjct: 71 SAQGNTGTAAQIARKFVGDRPDVIVAIATPSAQAVVAATKDVPVVYSAVTDPVAAQLVPS 130 Query: 132 WKASGTNVTGVSDLLELDKQIDLIKRVVPNAKRVGMVYNPGEANSAVVVKALKELLAKSN 191 +AS TNVTGVSDLL LDKQI+LIK+VVPNAKRVGMVYNPGEANS VVVK +++LL K+ Sbjct: 131 MEASNTNVTGVSDLLALDKQIELIKKVVPNAKRVGMVYNPGEANSVVVVKQMQDLLPKAG 190 Query: 192 MTLVEAAAPRSVDVGSAAKSLIGKVDVIYTNTDNNVVSAYEALVKVGNDAKIPLVASDTD 251 MTLVEAAAPR+VDV SAA+SLIGKVDVIYTNTDNNVVSAYE+LVKVGNDAKIPLVASDTD Sbjct: 191 MTLVEAAAPRTVDVASAARSLIGKVDVIYTNTDNNVVSAYESLVKVGNDAKIPLVASDTD 250 Query: 252 SVKRGAIAALGVNYYDLGRQTGKVVARILKGEKPGDIASATSSKLELFVNTAAAQKQGVT 311 SVKRGAIAALG+NY DLG QTGK+V RILKGEKPG + S TSSKLEL+VN AA KQGVT Sbjct: 251 SVKRGAIAALGINYRDLGVQTGKMVVRILKGEKPGAMPSETSSKLELYVNPGAAAKQGVT 310 Query: 312 LLADLIKSAKTVIK 325 L L+KSA VIK Sbjct: 311 LSDALVKSAAQVIK 324 >ref|ZP_07676708.1| ABC transporter [Ralstonia sp. 5_7_47FAA] gb|EFP64711.1| ABC transporter [Ralstonia sp. 5_7_47FAA] Length = 326 Score = 409 bits (1050), Expect = e-112, Method: Composition-based stats. Identities = 251/316 (79%), Positives = 277/316 (87%), Gaps = 1/316 (0%) Query: 11 AMVAALSLAAVCAAPAMA-ADKSVAVTAIVEHPALDAVRDGVKDELKEEGFEAGKNLKWE 69 A +AA+ +A + APA+A A KSV V AIVEHPALDA+RDG K++LK EGF+AGKNLKWE Sbjct: 11 AALAAIPMALLHTAPALAQATKSVEVLAIVEHPALDAIRDGAKEQLKAEGFDAGKNLKWE 70 Query: 70 YQSAQGNTGTAAQIARKFVGDKPDVIVAIATPSAQALVSATKSIPVVYSGVTDPVAAQLV 129 YQSAQG+T TAAQIARKF+GDKPD IVAIATPSAQA+V+ATKSIPVVYSGVTDPVAAQLV Sbjct: 71 YQSAQGSTATAAQIARKFIGDKPDAIVAIATPSAQAVVAATKSIPVVYSGVTDPVAAQLV 130 Query: 130 KDWKASGTNVTGVSDLLELDKQIDLIKRVVPNAKRVGMVYNPGEANSAVVVKALKELLAK 189 K W +GTNVTGVSD L LDKQI LIKRVVPNAKRVGMVYNPGEANS VVV LK+LL+ Sbjct: 131 KSWAPTGTNVTGVSDKLPLDKQIALIKRVVPNAKRVGMVYNPGEANSVVVVTELKKLLSA 190 Query: 190 SNMTLVEAAAPRSVDVGSAAKSLIGKVDVIYTNTDNNVVSAYEALVKVGNDAKIPLVASD 249 MTLVE+AAPR+VD+ AAK+LIGKVDVIYTNTDNNVVSAYE+LVKV N+AKIPLVA D Sbjct: 191 QGMTLVESAAPRTVDIAPAAKNLIGKVDVIYTNTDNNVVSAYESLVKVANEAKIPLVAGD 250 Query: 250 TDSVKRGAIAALGVNYYDLGRQTGKVVARILKGEKPGDIASATSSKLELFVNTAAAQKQG 309 TDSVKRGAIAALG+NYY LG+QTGKVVARILKGEKPG IASA SS LELFVN AA+KQG Sbjct: 251 TDSVKRGAIAALGINYYKLGQQTGKVVARILKGEKPGAIASAGSSDLELFVNEGAAKKQG 310 Query: 310 VTLLADLIKSAKTVIK 325 TL ADL+K AK VIK Sbjct: 311 ATLSADLLKDAKEVIK 326 >ref|NP_880732.1| hypothetical protein BP2068 [Bordetella pertussis Tohama I] emb|CAE42346.1| putative exported protein [Bordetella pertussis Tohama I] gb|AEE67347.1| hypothetical protein BPTD_2035 [Bordetella pertussis CS] Length = 324 Score = 407 bits (1047), Expect = e-111, Method: Composition-based stats. Identities = 251/314 (79%), Positives = 279/314 (88%), Gaps = 1/314 (0%) Query: 13 VAALSLA-AVCAAPAMAADKSVAVTAIVEHPALDAVRDGVKDELKEEGFEAGKNLKWEYQ 71 V AL+LA A+ AAP MA KSVA+TAIVEHPALD+VRDGV+D LK+ G+E+GKNLKW+YQ Sbjct: 11 VGALALAMAIHAAPVMAQQKSVAITAIVEHPALDSVRDGVQDALKQAGYESGKNLKWQYQ 70 Query: 72 SAQGNTGTAAQIARKFVGDKPDVIVAIATPSAQALVSATKSIPVVYSGVTDPVAAQLVKD 131 SAQGNTGTAAQIARK VGD+PDVIVAIATPSAQA+V+ATK +PVVYS VTDPVAAQLV Sbjct: 71 SAQGNTGTAAQIARKLVGDRPDVIVAIATPSAQAVVAATKDVPVVYSAVTDPVAAQLVPS 130 Query: 132 WKASGTNVTGVSDLLELDKQIDLIKRVVPNAKRVGMVYNPGEANSAVVVKALKELLAKSN 191 +AS TNVTGVSDLL LDKQI+LIK+VVPNAKRVGMVYNPGEANS VVVK +++LL K+ Sbjct: 131 MEASNTNVTGVSDLLALDKQIELIKKVVPNAKRVGMVYNPGEANSVVVVKQMQDLLPKAG 190 Query: 192 MTLVEAAAPRSVDVGSAAKSLIGKVDVIYTNTDNNVVSAYEALVKVGNDAKIPLVASDTD 251 MTLVEAAAPR+VDV SAA+SLIGKVDVIYTNTDNNVVSAYE+LVKVGNDAKIPLVASDTD Sbjct: 191 MTLVEAAAPRTVDVASAARSLIGKVDVIYTNTDNNVVSAYESLVKVGNDAKIPLVASDTD 250 Query: 252 SVKRGAIAALGVNYYDLGRQTGKVVARILKGEKPGDIASATSSKLELFVNTAAAQKQGVT 311 SVKRGAIAALG+NY DLG QTGK+V RILKGEKPG + S TSSKLEL+VN AA KQGVT Sbjct: 251 SVKRGAIAALGINYRDLGVQTGKMVVRILKGEKPGAMPSETSSKLELYVNPGAAAKQGVT 310 Query: 312 LLADLIKSAKTVIK 325 L L+KSA VIK Sbjct: 311 LSDALVKSAAQVIK 324