BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5303.p (281 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777546.1| ABC transporter periplasmic protein [Herbasp... 415 e-114 ref|YP_003777547.1| ABC transporter periplasmic protein [Herbasp... 356 2e-96 gb|AEG69078.1| ABC transporter substrate-binding protein [Ralsto... 310 2e-82 emb|CBJ37953.1| putative ABC-type transporter, periplasmic compo... 308 6e-82 ref|NP_519861.1| signal peptide protein [Ralstonia solanacearum ... 308 8e-82 >ref|YP_003777546.1| ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ65638.1| ABC-type uncharacterized transport system, periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 329 Score = 415 bits (1067), Expect = e-114, Method: Composition-based stats. Identities = 234/275 (85%), Positives = 255/275 (92%), Gaps = 1/275 (0%) Query: 1 MFTLSKTLRAITGALALAAVCAAPALAADKSVMVTSIVEHPALDAVRDGTRDELKDEGYE 60 M LSK+LRAI GALAL+AVCA+ ALAA+K V VTS VEHPALDAVRDGT+DEL G+E Sbjct: 7 MLALSKSLRAIAGALALSAVCAS-ALAAEKVVAVTSYVEHPALDAVRDGTKDELVAAGFE 65 Query: 61 GGKGFKFEFQSAQANAGTAGQIAKKFVGDNPDVIVAIGTPSAQPLVASTKTIPIVYSGIA 120 GK K+EFQSAQANAGTAGQIAKKFVGDNPDVIVAIGTPSAQP+VA+TKTIPIVYS IA Sbjct: 66 PGKNLKWEFQSAQANAGTAGQIAKKFVGDNPDVIVAIGTPSAQPMVAATKTIPIVYSAIA 125 Query: 121 DPIAAQLVKDWKPSGTNVTGLSHMLDPVKQVEVIKKVLPSAKRIGIVYNPGESNSVSALN 180 DP+AAQLVKDWKPSGTNVTG+SHMLDPVKQVEVIK+V+P AKR+G+VYNPGE+NSVSALN Sbjct: 126 DPMAAQLVKDWKPSGTNVTGMSHMLDPVKQVEVIKRVVPEAKRVGVVYNPGEANSVSALN 185 Query: 181 AIKAVLEKQGMTLVEAAAPRSVDVAPAAKSLIGKIDVMYTTTDNMVVSVFESLAKVCNDA 240 +K L+K G+TLVEAAAPRSVDVAPAAKSLIGKIDVMYTTTDN VVSVFESLAKVCNDA Sbjct: 186 NLKGELQKAGLTLVEAAAPRSVDVAPAAKSLIGKIDVMYTTTDNNVVSVFESLAKVCNDA 245 Query: 241 KIPLIASDTGSVKRGAVAALGVNFYDMGRQTGKMV 275 K+PLIASDTGSVKRGAVAALGVNFYDMGRQTGK+V Sbjct: 246 KLPLIASDTGSVKRGAVAALGVNFYDMGRQTGKLV 280 >ref|YP_003777547.1| ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] emb|CAP19661.2| periplasmic component protein [Herbaspirillum seropedicae] gb|ADJ65639.1| ABC-type uncharacterized transport system, periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 326 Score = 356 bits (914), Expect = 2e-96, Method: Composition-based stats. Identities = 196/270 (72%), Positives = 235/270 (87%) Query: 7 TLRAITGALALAAVCAAPALAADKSVMVTSIVEHPALDAVRDGTRDELKDEGYEGGKGFK 66 TLRA+ AL+LAAVC+APA+AADKSV VT+IVEHPALDAVRDG +DELK+EG+E GK K Sbjct: 8 TLRAMVAALSLAAVCSAPAMAADKSVAVTAIVEHPALDAVRDGVKDELKEEGFEAGKNLK 67 Query: 67 FEFQSAQANAGTAGQIAKKFVGDNPDVIVAIGTPSAQPLVASTKTIPIVYSGIADPIAAQ 126 +E+QSAQ N GTA QIA+KFVGD PD IVAI TPSAQ LVA+TK+IP+VYSG+ DP+AAQ Sbjct: 68 WEYQSAQGNTGTAAQIARKFVGDKPDAIVAIATPSAQALVAATKSIPVVYSGVTDPVAAQ 127 Query: 127 LVKDWKPSGTNVTGLSHMLDPVKQVEVIKKVLPSAKRIGIVYNPGESNSVSALNAIKAVL 186 LVKDWK SGTNVTG+S +L+ KQV++IK+V+P+AKR+G+VYNPGE+NS + A+K +L Sbjct: 128 LVKDWKASGTNVTGVSDLLELDKQVDLIKRVVPNAKRVGMVYNPGEANSAVVVKALKELL 187 Query: 187 EKQGMTLVEAAAPRSVDVAPAAKSLIGKIDVMYTTTDNMVVSVFESLAKVCNDAKIPLIA 246 K MTLVEAAAPRSVDV AAKSLIGK+DV+YT TDN VVS +E+L KV NDAKIPL+A Sbjct: 188 AKSNMTLVEAAAPRSVDVGSAAKSLIGKVDVIYTNTDNNVVSAYEALVKVGNDAKIPLVA 247 Query: 247 SDTGSVKRGAVAALGVNFYDMGRQTGKMVG 276 SDT SVKRGA+AALGVN+YD+GRQTGK+VG Sbjct: 248 SDTDSVKRGAIAALGVNYYDLGRQTGKVVG 277 >gb|AEG69078.1| ABC transporter substrate-binding protein [Ralstonia solanacearum Po82] Length = 374 Score = 310 bits (794), Expect = 2e-82, Method: Composition-based stats. Identities = 160/247 (64%), Positives = 208/247 (84%) Query: 30 KSVMVTSIVEHPALDAVRDGTRDELKDEGYEGGKGFKFEFQSAQANAGTAGQIAKKFVGD 89 KSV V +IV+HPALDA+RDG ++ELK EG++ GK K+E+QSAQ + TA QIA+KF+GD Sbjct: 80 KSVDVLTIVDHPALDAIRDGIKEELKAEGFDAGKNLKWEYQSAQGSPATAAQIARKFIGD 139 Query: 90 NPDVIVAIGTPSAQPLVASTKTIPIVYSGIADPIAAQLVKDWKPSGTNVTGLSHMLDPVK 149 PD IVAI TPSAQ +VA+TK++P+VY+G+ DP+AAQLVK W+PSGTNVTG+S L K Sbjct: 140 KPDAIVAIATPSAQAVVAATKSVPLVYAGVTDPVAAQLVKSWEPSGTNVTGVSDKLPLDK 199 Query: 150 QVEVIKKVLPSAKRIGIVYNPGESNSVSALNAIKAVLEKQGMTLVEAAAPRSVDVAPAAK 209 Q+ +IK+V+P AKR+G+VYNPGE+NSV +N +K +L QG+TLVE+AAPR+VD+APAAK Sbjct: 200 QIALIKRVVPHAKRVGMVYNPGEANSVVVVNELKKLLPAQGLTLVESAAPRTVDIAPAAK 259 Query: 210 SLIGKIDVMYTTTDNMVVSVFESLAKVCNDAKIPLIASDTGSVKRGAVAALGVNFYDMGR 269 +LIGK+DV+YT+TDN VVS +ESL KV N+AKIPL+A DT SVKRGA+AALG+N+Y +GR Sbjct: 260 NLIGKVDVIYTSTDNNVVSAYESLVKVANEAKIPLVAGDTDSVKRGAIAALGINYYKLGR 319 Query: 270 QTGKMVG 276 QTG +V Sbjct: 320 QTGTVVA 326 >emb|CBJ37953.1| putative ABC-type transporter, periplasmic component [Ralstonia solanacearum CMR15] Length = 329 Score = 308 bits (789), Expect = 6e-82, Method: Composition-based stats. Identities = 166/254 (65%), Positives = 214/254 (84%), Gaps = 1/254 (0%) Query: 24 PALA-ADKSVMVTSIVEHPALDAVRDGTRDELKDEGYEGGKGFKFEFQSAQANAGTAGQI 82 PALA A KSV V +IVEHPALDA+RDG ++ELK +G++ GK K+E+QSAQ +A TA QI Sbjct: 28 PALAQATKSVEVLAIVEHPALDAIRDGVKEELKAQGFDAGKTLKWEYQSAQGSAATAAQI 87 Query: 83 AKKFVGDNPDVIVAIGTPSAQPLVASTKTIPIVYSGIADPIAAQLVKDWKPSGTNVTGLS 142 A+KF+GD PD IVAI TPSAQ +VA+TKT+P+VY+G+ DP+AAQLVK W+PSGTNVTG+S Sbjct: 88 ARKFIGDKPDAIVAITTPSAQAVVAATKTVPVVYAGVTDPVAAQLVKSWEPSGTNVTGVS 147 Query: 143 HMLDPVKQVEVIKKVLPSAKRIGIVYNPGESNSVSALNAIKAVLEKQGMTLVEAAAPRSV 202 L KQ+ +IK+V+P AKR+G++YNPGE+NSV +N +K +L QG+TLVE+AAPR+V Sbjct: 148 DKLPLDKQIALIKRVVPHAKRVGMIYNPGEANSVVVVNELKKLLSAQGLTLVESAAPRTV 207 Query: 203 DVAPAAKSLIGKIDVMYTTTDNMVVSVFESLAKVCNDAKIPLIASDTGSVKRGAVAALGV 262 D+APA K+LIGK+DV+YT+TDN VVS +ESL KV N+AKIPLIA+DT SVKRGA+AALG+ Sbjct: 208 DIAPATKNLIGKVDVIYTSTDNNVVSAYESLVKVANEAKIPLIAADTDSVKRGAIAALGI 267 Query: 263 NFYDMGRQTGKMVG 276 N+Y +GRQTG +V Sbjct: 268 NYYRLGRQTGTVVA 281 >ref|NP_519861.1| signal peptide protein [Ralstonia solanacearum GMI1000] emb|CAD15442.1| putative abc-type uncharacterized transport system, periplasmic component abc transporter protein [Ralstonia solanacearum GMI1000] Length = 329 Score = 308 bits (788), Expect = 8e-82, Method: Composition-based stats. Identities = 165/254 (64%), Positives = 214/254 (84%), Gaps = 1/254 (0%) Query: 24 PALA-ADKSVMVTSIVEHPALDAVRDGTRDELKDEGYEGGKGFKFEFQSAQANAGTAGQI 82 PALA A KSV V SIVEHPALDA+RDG ++ELK +G++ GK K+E+QSAQ +A TA QI Sbjct: 28 PALAQAAKSVEVLSIVEHPALDAIRDGVKEELKAQGFDAGKNLKWEYQSAQGSAATAAQI 87 Query: 83 AKKFVGDNPDVIVAIGTPSAQPLVASTKTIPIVYSGIADPIAAQLVKDWKPSGTNVTGLS 142 A+KF+GD PD IVAI TP+AQ +VA+TKT+P+VY+G+ DP+AAQLVK W+PSGTNVTG+S Sbjct: 88 ARKFIGDKPDAIVAITTPAAQAVVAATKTVPVVYAGVTDPVAAQLVKSWEPSGTNVTGVS 147 Query: 143 HMLDPVKQVEVIKKVLPSAKRIGIVYNPGESNSVSALNAIKAVLEKQGMTLVEAAAPRSV 202 L KQ+ +IK+V+P AKR+G++YNPGE+NSV +N +K +L QG+TLVE+AAPR+V Sbjct: 148 DKLPLDKQIALIKRVVPHAKRVGMIYNPGEANSVVVVNELKKLLSAQGLTLVESAAPRTV 207 Query: 203 DVAPAAKSLIGKIDVMYTTTDNMVVSVFESLAKVCNDAKIPLIASDTGSVKRGAVAALGV 262 D+APA K+LIGK+DV+YT+TDN VVS +ESL KV N+AKIPL+A+DT SVKRGA+AALG+ Sbjct: 208 DIAPATKNLIGKVDVIYTSTDNNVVSAYESLVKVANEAKIPLVAADTDSVKRGAIAALGI 267 Query: 263 NFYDMGRQTGKMVG 276 N+Y +GRQTG +V Sbjct: 268 NYYRLGRQTGTVVA 281