BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5302.p (297 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777545.1| ABC transporter permease [Herbaspirillum ser... 415 e-114 ref|YP_295528.1| inner-membrane translocator [Ralstonia eutropha... 387 e-105 ref|YP_440999.1| ABC transporter permease [Burkholderia thailand... 379 e-103 ref|YP_370398.1| ABC transporter, inner membrane subunit [Burkho... 378 e-103 gb|EGD00024.1| putative ABC transporter permease [Burkholderia s... 377 e-102 >ref|YP_003777545.1| ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ65637.1| ABC-type uncharacterized transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 297 Score = 415 bits (1066), Expect = e-114, Method: Composition-based stats. Identities = 288/297 (96%), Positives = 295/297 (99%) Query: 1 MSLYTLLGALEIGLIFSLVALGVLISFRILVFPDLTVDGSFPLGGAVAATMIAAGFNPFL 60 MSLYTLLGALEIGLIFSLVALGVLISFRILVFPDLTVDGSFPLGGAVAATMIAAG+NPFL Sbjct: 1 MSLYTLLGALEIGLIFSLVALGVLISFRILVFPDLTVDGSFPLGGAVAATMIAAGYNPFL 60 Query: 61 ATFVALLAGALAGFITAWLNVRLKIMDLLASILMMIALYSINLRVMGKPNVPLISEPTIF 120 +TF+ALLAGALAGF TAWLNVRLKIMDLLASILMMIALYSINLRVMGKPNVPLISEPTIF Sbjct: 61 STFIALLAGALAGFTTAWLNVRLKIMDLLASILMMIALYSINLRVMGKPNVPLISEPTIF 120 Query: 121 SILQPDSIPDYVSRPLILLVVVTGAKLLLDWFFSSEIGLAMRATGANARMARAQGIATGR 180 +ILQPD+IPDYV+RPLILLVVV GAKLLLDWFFSSEIGLAMRATGANARMARAQGIATGR Sbjct: 121 TILQPDAIPDYVARPLILLVVVIGAKLLLDWFFSSEIGLAMRATGANARMARAQGIATGR 180 Query: 181 ATLAGMALANSLVALAGALFAQTQGGSDISMGIGTIVIGLAAVIIGENILPARRLVWTTL 240 ATLAGMALANSLVALAGALFAQTQGGSDISMGIGTIVIGLAAVIIGENILPARRLVWTTL Sbjct: 181 ATLAGMALANSLVALAGALFAQTQGGSDISMGIGTIVIGLAAVIIGENILPARRLVWTTL 240 Query: 241 AVILGAILYRFFIALALNSDFIGLQAQDLNLVTAVLVMLALVLPMGKRKLKLLRKGA 297 AVILGAILYRFFIALALNSDFIGLQAQDLNLVTAVLVMLALVLPMGKRKLKLL+KGA Sbjct: 241 AVILGAILYRFFIALALNSDFIGLQAQDLNLVTAVLVMLALVLPMGKRKLKLLKKGA 297 >ref|YP_295528.1| inner-membrane translocator [Ralstonia eutropha JMP134] gb|AAZ60684.1| inner-membrane translocator [Ralstonia eutropha JMP134] Length = 298 Score = 387 bits (993), Expect = e-105, Method: Composition-based stats. Identities = 248/297 (83%), Positives = 275/297 (92%) Query: 1 MSLYTLLGALEIGLIFSLVALGVLISFRILVFPDLTVDGSFPLGGAVAATMIAAGFNPFL 60 MSL++LLGALEIGLIFSLVALGVLISFRIL FPDLTVDGSFPLGGAVAAT+IAAG +PF+ Sbjct: 1 MSLFSLLGALEIGLIFSLVALGVLISFRILNFPDLTVDGSFPLGGAVAATLIAAGQDPFV 60 Query: 61 ATFVALLAGALAGFITAWLNVRLKIMDLLASILMMIALYSINLRVMGKPNVPLISEPTIF 120 AT VA++AGALAGFIT WLNVRLKIMDLLASILMMIALYS+NLR+MG+PNVPLI+EPT+F Sbjct: 61 ATAVAIVAGALAGFITGWLNVRLKIMDLLASILMMIALYSVNLRIMGRPNVPLITEPTMF 120 Query: 121 SILQPDSIPDYVSRPLILLVVVTGAKLLLDWFFSSEIGLAMRATGANARMARAQGIATGR 180 +ILQPD +PDYV RPL+L +VV AK+ LDWFFSS++GLAMRATGAN RMARAQGIATGR Sbjct: 121 TILQPDWMPDYVLRPLVLFIVVVVAKIGLDWFFSSQLGLAMRATGANPRMARAQGIATGR 180 Query: 181 ATLAGMALANSLVALAGALFAQTQGGSDISMGIGTIVIGLAAVIIGENILPARRLVWTTL 240 ATLAGMAL+N LVALAGALFAQTQGGSDISMGIGTIVIGLAAVIIGE+ILPARRLVW TL Sbjct: 181 ATLAGMALSNGLVALAGALFAQTQGGSDISMGIGTIVIGLAAVIIGESILPARRLVWATL 240 Query: 241 AVILGAILYRFFIALALNSDFIGLQAQDLNLVTAVLVMLALVLPMGKRKLKLLRKGA 297 AV+LGAILYRFFIALALNSDFIGL+AQDLNLVTA LV +ALVLP ++KL + G Sbjct: 241 AVVLGAILYRFFIALALNSDFIGLKAQDLNLVTAALVTIALVLPATRKKLFARKNGG 297 >ref|YP_440999.1| ABC transporter permease [Burkholderia thailandensis E264] gb|ABC37770.1| ABC transporter, permease protein [Burkholderia thailandensis E264] Length = 339 Score = 379 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 242/290 (83%), Positives = 269/290 (92%) Query: 1 MSLYTLLGALEIGLIFSLVALGVLISFRILVFPDLTVDGSFPLGGAVAATMIAAGFNPFL 60 MSL++LLGALEIGLIFSLVALGVLISFRIL FPDLTVDGSFPLGGAVAAT+IAAG++PF Sbjct: 42 MSLFSLLGALEIGLIFSLVALGVLISFRILNFPDLTVDGSFPLGGAVAATLIAAGYDPFT 101 Query: 61 ATFVALLAGALAGFITAWLNVRLKIMDLLASILMMIALYSINLRVMGKPNVPLISEPTIF 120 +T A+ AGA AGF+T WLNVRLKIMDLLASILMMIALYS+NLR+MG+PNVPLI+EPT+F Sbjct: 102 STLAAIAAGACAGFVTGWLNVRLKIMDLLASILMMIALYSVNLRIMGRPNVPLITEPTLF 161 Query: 121 SILQPDSIPDYVSRPLILLVVVTGAKLLLDWFFSSEIGLAMRATGANARMARAQGIATGR 180 ++LQPD +PDYV RP +L VVV AKL LDWFFSS++GLAMRATGAN RMARAQGIATGR Sbjct: 162 TVLQPDWMPDYVLRPALLAVVVVIAKLGLDWFFSSQLGLAMRATGANPRMARAQGIATGR 221 Query: 181 ATLAGMALANSLVALAGALFAQTQGGSDISMGIGTIVIGLAAVIIGENILPARRLVWTTL 240 ATLAGMAL+N+LVALAGALFAQTQGGSDISMGIGTIVIGLAAVIIGE +LPARRL TTL Sbjct: 222 ATLAGMALSNALVALAGALFAQTQGGSDISMGIGTIVIGLAAVIIGETLLPARRLFLTTL 281 Query: 241 AVILGAILYRFFIALALNSDFIGLQAQDLNLVTAVLVMLALVLPMGKRKL 290 AV+LGAILYRFFIALALNSDFIGL+AQDLNLVTAVLV +ALVLP ++KL Sbjct: 282 AVVLGAILYRFFIALALNSDFIGLKAQDLNLVTAVLVTVALVLPATRKKL 331 >ref|YP_370398.1| ABC transporter, inner membrane subunit [Burkholderia sp. 383] gb|ABB09754.1| ABC transporter, inner membrane subunit [Burkholderia sp. 383] Length = 298 Score = 378 bits (970), Expect = e-103, Method: Composition-based stats. Identities = 240/297 (80%), Positives = 274/297 (92%) Query: 1 MSLYTLLGALEIGLIFSLVALGVLISFRILVFPDLTVDGSFPLGGAVAATMIAAGFNPFL 60 MSL++LLGALEIGLIFSLVALGVLISFRIL FPDLTVDGSFPLGGAVAAT+I+AG++PF Sbjct: 1 MSLFSLLGALEIGLIFSLVALGVLISFRILNFPDLTVDGSFPLGGAVAATLISAGYDPFS 60 Query: 61 ATFVALLAGALAGFITAWLNVRLKIMDLLASILMMIALYSINLRVMGKPNVPLISEPTIF 120 +T +A++AGA+AGFIT WLNVRLKIMDLLASILMMIALYS+NLR+MG+PNVPLI+EPTIF Sbjct: 61 STCIAIVAGAVAGFITGWLNVRLKIMDLLASILMMIALYSVNLRIMGRPNVPLITEPTIF 120 Query: 121 SILQPDSIPDYVSRPLILLVVVTGAKLLLDWFFSSEIGLAMRATGANARMARAQGIATGR 180 ++LQPD +PDYV RP +L +VV AKL LDWFFSS++GLAMRATGAN RMARAQGIATGR Sbjct: 121 TVLQPDWMPDYVLRPALLAIVVVVAKLGLDWFFSSQLGLAMRATGANPRMARAQGIATGR 180 Query: 181 ATLAGMALANSLVALAGALFAQTQGGSDISMGIGTIVIGLAAVIIGENILPARRLVWTTL 240 ATLAGMAL+N+LVALAGALFAQTQGG+DISMGIGTIVIGLAAVIIGE +LPARRLV TTL Sbjct: 181 ATLAGMALSNALVALAGALFAQTQGGADISMGIGTIVIGLAAVIIGETLLPARRLVLTTL 240 Query: 241 AVILGAILYRFFIALALNSDFIGLQAQDLNLVTAVLVMLALVLPMGKRKLKLLRKGA 297 AV+LGAI+YRFFIALALNS+FIGL+AQDLNLVTA LV +ALVLP ++KL + G Sbjct: 241 AVVLGAIVYRFFIALALNSEFIGLKAQDLNLVTAALVTIALVLPATRKKLFARKNGG 297 >gb|EGD00024.1| putative ABC transporter permease [Burkholderia sp. TJI49] Length = 298 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 240/297 (80%), Positives = 274/297 (92%) Query: 1 MSLYTLLGALEIGLIFSLVALGVLISFRILVFPDLTVDGSFPLGGAVAATMIAAGFNPFL 60 MSL++LLGALEIGLIFSLVALGVLISFRIL FPDLTVDGSFPLGGAVAAT+I+AG++PF Sbjct: 1 MSLFSLLGALEIGLIFSLVALGVLISFRILNFPDLTVDGSFPLGGAVAATLISAGYDPFT 60 Query: 61 ATFVALLAGALAGFITAWLNVRLKIMDLLASILMMIALYSINLRVMGKPNVPLISEPTIF 120 +T +A++AGALAGF+T WLNVRLKIMDLLASILMMIALYS+NLR+MG+PNVPLI+EPTIF Sbjct: 61 STCLAIVAGALAGFVTGWLNVRLKIMDLLASILMMIALYSVNLRIMGRPNVPLITEPTIF 120 Query: 121 SILQPDSIPDYVSRPLILLVVVTGAKLLLDWFFSSEIGLAMRATGANARMARAQGIATGR 180 ++LQPD +PDYV RP +L +VV AKL LDWFFSS++GLAMRATGAN RMARAQGIATGR Sbjct: 121 TVLQPDWLPDYVLRPALLALVVVVAKLGLDWFFSSQLGLAMRATGANPRMARAQGIATGR 180 Query: 181 ATLAGMALANSLVALAGALFAQTQGGSDISMGIGTIVIGLAAVIIGENILPARRLVWTTL 240 ATLAGMAL+N+LVALAGALFAQTQGG+DISMGIGTIVIGLAAVIIGE +LPARRLV TTL Sbjct: 181 ATLAGMALSNALVALAGALFAQTQGGADISMGIGTIVIGLAAVIIGETLLPARRLVLTTL 240 Query: 241 AVILGAILYRFFIALALNSDFIGLQAQDLNLVTAVLVMLALVLPMGKRKLKLLRKGA 297 AV+LGAI+YRFFIALALNS+FIGL+AQDLNLVTA LV +ALVLP ++KL + G Sbjct: 241 AVVLGAIVYRFFIALALNSEFIGLKAQDLNLVTAALVTIALVLPATRKKLFARKNGG 297