BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.5300.p         (117 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003777543.1| tRNA/rRNA methyltransferase [Herbaspirillum ...   228   2e-58
ref|YP_004754653.1| tRNA (cytosine-O-)-methyltransferase [Collim...   185   2e-45
ref|YP_001101156.1| putative tRNA/rRNA methyltransferase [Hermin...   183   7e-45
ref|ZP_08273188.1| tRNA (cytosine34-2'-O-)-methyltransferase [Ox...   178   2e-43
ref|YP_582412.1| putative rRNA methylase [Cupriavidus metallidur...   177   5e-43

>ref|YP_003777543.1| tRNA/rRNA methyltransferase [Herbaspirillum seropedicae SmR1]
 gb|ADJ65635.1| tRNA/rRNA methyltransferase protein [Herbaspirillum seropedicae
           SmR1]
          Length = 160

 Score =  228 bits (582), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 111/117 (94%), Positives = 115/117 (98%)

Query: 1   MRRAGLDYHEYANMQVHKDWDQFLAQRRQDPQFDEARMFAMTTHGSTPFAGLAFRPGDTF 60
           MRRAGLDYHEYANMQVH+DWDQFLA RRQ+P FDEARMFAMTTHGSTPFAGLAFRPGDTF
Sbjct: 44  MRRAGLDYHEYANMQVHQDWDQFLAHRRQEPLFDEARMFAMTTHGSTPFAGLAFRPGDTF 103

Query: 61  VFGSETRGLAPERRESFPTAQRIRLPMRPGNRSINLSNTVAVVVYEAWRQNGYDGGS 117
           VFGSETRGLAPERRESFPT+QRIRLPMRPGNRSINLSNTVAVVVYEAWRQNGY+GGS
Sbjct: 104 VFGSETRGLAPERRESFPTSQRIRLPMRPGNRSINLSNTVAVVVYEAWRQNGYEGGS 160


>ref|YP_004754653.1| tRNA (cytosine-O-)-methyltransferase [Collimonas fungivorans
           Ter331]
 gb|AAT42383.1| putative rRNA methylase [Collimonas fungivorans Ter331]
 gb|AEK63830.1| tRNA (cytosine-O-)-methyltransferase [Collimonas fungivorans
           Ter331]
          Length = 160

 Score =  185 bits (469), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 89/117 (76%), Positives = 97/117 (82%)

Query: 1   MRRAGLDYHEYANMQVHKDWDQFLAQRRQDPQFDEARMFAMTTHGSTPFAGLAFRPGDTF 60
           MRRAGLDYH+YA MQVH DW+ F+A  R    +D +RMFAMTTHGSTPFA L FRPGD F
Sbjct: 44  MRRAGLDYHDYATMQVHADWNDFVASMRDAGSYDPSRMFAMTTHGSTPFASLQFRPGDIF 103

Query: 61  VFGSETRGLAPERRESFPTAQRIRLPMRPGNRSINLSNTVAVVVYEAWRQNGYDGGS 117
           VFGSETRGL P  RESF  +QRIRLPMRP NRS+NLSNTVAVVVYEAWRQNGY GG+
Sbjct: 104 VFGSETRGLDPALRESFAPSQRIRLPMRPDNRSLNLSNTVAVVVYEAWRQNGYSGGA 160


>ref|YP_001101156.1| putative tRNA/rRNA methyltransferase [Herminiimonas arsenicoxydans]
 emb|CAL63035.1| Putative RNA methyltransferase [Herminiimonas arsenicoxydans]
          Length = 160

 Score =  183 bits (465), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 88/116 (75%), Positives = 96/116 (82%)

Query: 1   MRRAGLDYHEYANMQVHKDWDQFLAQRRQDPQFDEARMFAMTTHGSTPFAGLAFRPGDTF 60
           MRRAGLDYH+YA M+VH DW  FL     D   + ARMFA+TTHGSTPFAGLAF+PGD F
Sbjct: 44  MRRAGLDYHDYAQMKVHHDWQAFLDSFPADQPLNPARMFALTTHGSTPFAGLAFQPGDIF 103

Query: 61  VFGSETRGLAPERRESFPTAQRIRLPMRPGNRSINLSNTVAVVVYEAWRQNGYDGG 116
           VFGSET+GLAP  RESFP  QRIRLPMRP NRS+NLSNTVAVVVYEAWRQNG+ GG
Sbjct: 104 VFGSETKGLAPALRESFPPVQRIRLPMRPDNRSLNLSNTVAVVVYEAWRQNGFTGG 159


>ref|ZP_08273188.1| tRNA (cytosine34-2'-O-)-methyltransferase [Oxalobacteraceae
           bacterium IMCC9480]
 gb|EGF33332.1| tRNA (cytosine34-2'-O-)-methyltransferase [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 156

 Score =  178 bits (452), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 88/117 (75%), Positives = 97/117 (82%), Gaps = 4/117 (3%)

Query: 1   MRRAGLDYHEYANMQVHKDWDQFLAQRRQDPQFDEARMFAMTTHGSTPFAGLAFRPGDTF 60
           MRRAGLDYH+YA MQVH DW +F+A  + DPQ    RMFA+TTHGSTPFA   FRPGD F
Sbjct: 44  MRRAGLDYHDYATMQVHPDWSRFIATVQPDPQ----RMFALTTHGSTPFATGQFRPGDVF 99

Query: 61  VFGSETRGLAPERRESFPTAQRIRLPMRPGNRSINLSNTVAVVVYEAWRQNGYDGGS 117
           VFGSET+GL P  RESFP +QRIRLPMRP NRS+NLSNTVAVVVYEAWRQNGY GG+
Sbjct: 100 VFGSETKGLDPALRESFPPSQRIRLPMRPDNRSLNLSNTVAVVVYEAWRQNGYAGGA 156


>ref|YP_582412.1| putative rRNA methylase [Cupriavidus metallidurans CH34]
 gb|ABF07143.1| putative rRNA methylase [Cupriavidus metallidurans CH34]
          Length = 156

 Score =  177 bits (448), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 87/117 (74%), Positives = 98/117 (83%), Gaps = 4/117 (3%)

Query: 1   MRRAGLDYHEYANMQVHKDWDQFLAQRRQDPQFDEARMFAMTTHGSTPFAGLAFRPGDTF 60
           MRRAGLDYHEYA M+VH+ WD  +A  + DP     RMFA+TTHGSTPF  ++F PGD F
Sbjct: 44  MRRAGLDYHEYATMRVHESWDALMAAEQPDP----TRMFALTTHGSTPFGQVSFAPGDWF 99

Query: 61  VFGSETRGLAPERRESFPTAQRIRLPMRPGNRSINLSNTVAVVVYEAWRQNGYDGGS 117
           VFGSETRGLAPERRE FP+AQRIRLPMRP NRS+NLSNTVAVVV+EAWRQNG+ GGS
Sbjct: 100 VFGSETRGLAPERREWFPSAQRIRLPMRPNNRSLNLSNTVAVVVFEAWRQNGFAGGS 156