BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.5299.p         (283 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003777542.1| amidophosphoribosyltransferase [Herbaspirill...   398   e-109
ref|YP_001101155.1| amidophosphoribosyltransferase [Herminiimona...   251   1e-64
ref|ZP_08273189.1| Competence protein F [Oxalobacteraceae bacter...   202   7e-50
ref|YP_004754652.1| competence protein F [Collimonas fungivorans...   200   2e-49
ref|YP_001354845.1| Comf family protein [Janthinobacterium sp. M...   195   6e-48

>ref|YP_003777542.1| amidophosphoribosyltransferase [Herbaspirillum seropedicae SmR1]
 gb|ADJ65634.1| amidophosphoribosyltransferase protein [Herbaspirillum seropedicae
           SmR1]
          Length = 299

 Score =  398 bits (1023), Expect = e-109,   Method: Composition-based stats.
 Identities = 228/254 (89%), Positives = 239/254 (94%)

Query: 29  PRPGKPSGPGWLQRLLAHLPQLLPSSCALCGAAGRETLCAPCHKRFYTRQHRRCIQCALP 88
           P P K SGP WL+RLLA +P LLPS+CALCGA GRE LCAPCHKRFYTRQHRRCIQCA+P
Sbjct: 45  PAPKKNSGPHWLKRLLARVPPLLPSACALCGAEGREILCAPCHKRFYTRQHRRCIQCAMP 104

Query: 89  MPVTGKELRCGACLKDRPAFDATIVATDYFAPSDQLALALKFGGDLRLAPLLARLIFDAT 148
           MPVTGKELRCGACLKDRPAFDATIVATDYFAPSDQLALALKFGGDLRLAPLLARLI DA+
Sbjct: 105 MPVTGKELRCGACLKDRPAFDATIVATDYFAPSDQLALALKFGGDLRLAPLLARLIHDAS 164

Query: 149 RRNPVPGSDVQLPMPTLLAPVPLGLARLQERGFNQALEIARPLGKLMDIPVQPRLLERKK 208
           RRNPVPGSDV LPMP+LLAPVPLG  RLQERGFNQALEIA+PL +LM +P+QP+LLERKK
Sbjct: 165 RRNPVPGSDVALPMPSLLAPVPLGRTRLQERGFNQALEIAKPLSQLMGLPLQPQLLERKK 224

Query: 209 ETEAQSALPVGARARNVRSAFALPFAAMDQVRGLHVGIVDDVMTTGATLNEVAIVLKRHG 268
           ETEAQSALPVGARARNVRSAFALPFA MDQVRGLHVGIVDDVMTTGATLNEVAIVLKRHG
Sbjct: 225 ETEAQSALPVGARARNVRSAFALPFATMDQVRGLHVGIVDDVMTTGATLNEVAIVLKRHG 284

Query: 269 ARRVTNLVFARTLP 282
           ARRVTNLVFARTLP
Sbjct: 285 ARRVTNLVFARTLP 298


>ref|YP_001101155.1| amidophosphoribosyltransferase [Herminiimonas arsenicoxydans]
 emb|CAL63034.1| Putative amidophosphoribosyltransferase [Herminiimonas
           arsenicoxydans]
          Length = 247

 Score =  251 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 145/245 (59%), Positives = 166/245 (67%), Gaps = 7/245 (2%)

Query: 39  WLQRLLAHLPQLLPSSCALCGAAGRETLCAPCHKRFYTRQHRRCIQCALPMPVTGK-ELR 97
           W +  + HLP  LPSSCALCG + R+ LC  C +RF+ +   RC+QCA P+P TG    R
Sbjct: 8   WSRHFIRHLPTALPSSCALCGFSSRQALCVDCEQRFFHQTPPRCLQCASPLPHTGALAQR 67

Query: 98  CGACLKDRPAFDATIVATDYFAPSDQLALALKFGGDLRLAPLLARLIFDATRRNPVPGSD 157
           CGACL D PAFDATIVA DY AP D L LALKFG  L LAPL A ++ DA  R P     
Sbjct: 68  CGACLGDPPAFDATIVAGDYAAPVDHLVLALKFGNRLALAPLFASMLRDAILREPA---- 123

Query: 158 VQLPMPTLLAPVPLGLARLQERGFNQALEIARPLGKLMDIPVQPRLLERKKETEAQSALP 217
               MP LL  VPLG  RL ERGFNQALEIA+PL + + IP+ P+LLER ++T  QS L 
Sbjct: 124 --FAMPALLTAVPLGEKRLSERGFNQALEIAKPLAQAIAIPLAPQLLERTRDTLMQSMLH 181

Query: 218 VGARARNVRSAFALPFAAMDQVRGLHVGIVDDVMTTGATLNEVAIVLKRHGARRVTNLVF 277
              R RN+R AF LP  A   VRG HVG+VDDVMTTG TLNE+A  LKRHGA RVTNLVF
Sbjct: 182 PAERHRNMRHAFVLPANADVLVRGRHVGVVDDVMTTGVTLNEIAATLKRHGAVRVTNLVF 241

Query: 278 ARTLP 282
           ART P
Sbjct: 242 ARTPP 246


>ref|ZP_08273189.1| Competence protein F [Oxalobacteraceae bacterium IMCC9480]
 gb|EGF33333.1| Competence protein F [Oxalobacteraceae bacterium IMCC9480]
          Length = 210

 Score =  202 bits (513), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 123/214 (57%), Positives = 147/214 (68%), Gaps = 7/214 (3%)

Query: 69  PCHKRFYTRQHRRCIQCALPMPVTGKELRCGACLKDRPAFDATIVATDYFAPSDQLALAL 128
           PC  +F+     RC  CALP  V     RCGACL++ PAFDATIVATDY  P DQL LAL
Sbjct: 3   PCRLQFFRHTGSRCQCCALPCTVG---TRCGACLRNPPAFDATIVATDYQPPIDQLVLAL 59

Query: 129 KFGGDLRLAPLLARLIFDATRRNPVPGSDVQLPMPTLLAPVPLGLARLQERGFNQALEIA 188
           KFG  L LA L   L+ DA     +  +  +   P L+APVPLG  RL ERG+NQALEIA
Sbjct: 60  KFGAALPLARLFGDLLSDAQ----ITAAPDRRDWPDLIAPVPLGPQRLIERGYNQALEIA 115

Query: 189 RPLGKLMDIPVQPRLLERKKETEAQSALPVGARARNVRSAFALPFAAMDQVRGLHVGIVD 248
           RPL + + +P+ PRLL R +ET AQ+A+P   R +N+ +AF +P  AM  V G HVG+VD
Sbjct: 116 RPLARSLTLPLSPRLLVRVRETGAQAAMPARQRHKNIHAAFVVPVQAMASVDGRHVGVVD 175

Query: 249 DVMTTGATLNEVAIVLKRHGARRVTNLVFARTLP 282
           DVMTTGATL+EVA  LKR+GARRVTNLVFART P
Sbjct: 176 DVMTTGATLHEVAATLKRYGARRVTNLVFARTPP 209


>ref|YP_004754652.1| competence protein F [Collimonas fungivorans Ter331]
 gb|AAT42382.1| putative amidophosphoribosyltransferase [Collimonas fungivorans
           Ter331]
 gb|AEK63829.1| Competence protein F [Collimonas fungivorans Ter331]
          Length = 236

 Score =  200 bits (508), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 124/233 (53%), Positives = 159/233 (68%), Gaps = 5/233 (2%)

Query: 51  LPSSCALCGAAGRETLCAPCHKRFYTRQHRRCIQCA--LPMPVTGKELRCGACLKDRPAF 108
           +PS CALCG +G++ +C  C   +++ +  RCIQCA  LP         CG CLK   AF
Sbjct: 5   MPSCCALCGRSGKQVICDGCSGHYFSGRPPRCIQCANRLPRLDGDNPALCGNCLKQARAF 64

Query: 109 DATIVATDYFAPSDQLALALKFGGDLRLAPLLARLIFDATRRNPVPGSDVQLPMPTLLAP 168
           DATIVA DY AP+D+L LALKFGG L LAP  A+++F A+R    PG   Q  +P +L  
Sbjct: 65  DATIVACDYTAPADRLVLALKFGGQLALAPAFAQMLFAASRIGVHPGQ--QPDLPDILTA 122

Query: 169 VPLGLARLQERGFNQALEIARPLGKLMDIPVQPRLLERKKETEAQSALP-VGARARNVRS 227
           VPL   RLQ+RGFNQALEIARPL +L+ + +Q  LL R+++T  QS  P +  R RN+R 
Sbjct: 123 VPLSAQRLQQRGFNQALEIARPLARLLGLGLQHGLLLRQRDTLPQSLAPDLEQRRRNLRQ 182

Query: 228 AFALPFAAMDQVRGLHVGIVDDVMTTGATLNEVAIVLKRHGARRVTNLVFART 280
           AF +P AAM Q+RG H+G+VDDVMTTG TL+ +A  L+RHGA R+TN VFART
Sbjct: 183 AFIVPPAAMMQIRGRHIGVVDDVMTTGETLHALAQTLRRHGASRITNFVFART 235


>ref|YP_001354845.1| Comf family protein [Janthinobacterium sp. Marseille]
 gb|ABR89423.1| Comf family protein [Janthinobacterium sp. Marseille]
          Length = 217

 Score =  195 bits (496), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 117/216 (54%), Positives = 140/216 (64%), Gaps = 9/216 (4%)

Query: 39  WLQRLLAHLPQLLPSSCALCGAAGRETLCAPCHKRFYTRQHRRCIQCALPMPVTGKELR- 97
           W +R    LP  LP+SCALC   G   LCAPC  +F++R+  RC QCA P+   G+  R 
Sbjct: 8   WSRRCALRLPATLPTSCALCSIPGTSALCAPCRGQFFSRRPPRCTQCAYPL-THGEHARS 66

Query: 98  -CGACLKDRPAFDATIVATDYFAPSDQLALALKFGGDLRLAPLLARLIFDATRRNPVPGS 156
            CG CL+   AFDATIVA DY AP D L LALKFG  L LAPL A+LI DA  R      
Sbjct: 67  FCGNCLRTPRAFDATIVAGDYSAPIDHLVLALKFGNQLALAPLFAQLIVDALLR------ 120

Query: 157 DVQLPMPTLLAPVPLGLARLQERGFNQALEIARPLGKLMDIPVQPRLLERKKETEAQSAL 216
           +    MPT++A VPLG  RL ERGFNQALEIARPL K + IP+ P+L++R +ET  QS+L
Sbjct: 121 ERAFAMPTIMAAVPLGEKRLAERGFNQALEIARPLSKAIAIPLLPQLIQRSRETAMQSSL 180

Query: 217 PVGARARNVRSAFALPFAAMDQVRGLHVGIVDDVMT 252
           P  AR  N+R AF L   A D VRG H+ IVDDV+T
Sbjct: 181 PPDARHHNMRDAFTLAPQAADLVRGQHIAIVDDVLT 216