BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.5297.p         (156 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003777540.1| integral membrane protein [Herbaspirillum se...   219   2e-55
ref|YP_004751212.1| hypothetical protein CFU_0553 [Collimonas fu...   147   5e-34
ref|ZP_08273191.1| hypothetical protein IMCC9480_563 [Oxalobacte...   125   1e-27
ref|YP_001354843.1| hypothetical protein mma_3153 [Janthinobacte...   119   2e-25
ref|YP_004684205.1| hypothetical protein CNE_1c03580 [Cupriavidu...   112   2e-23

>ref|YP_003777540.1| integral membrane protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ65632.1| integral membrane protein [Herbaspirillum seropedicae SmR1]
          Length = 156

 Score =  219 bits (557), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 124/156 (79%), Positives = 136/156 (87%)

Query: 1   METREWILKRNCSIAPRQLAWVFAVLCTVSLTVALGFTLRGAWIILVFSCIELVAVGAAM 60
           METREWILKRNCSIAPRQLAWVFA+LCTVSLTVALGFTL GAWIILVFS IE  AVGAAM
Sbjct: 1   METREWILKRNCSIAPRQLAWVFAILCTVSLTVALGFTLHGAWIILVFSFIESTAVGAAM 60

Query: 61  LVYARHATDREVLVLADHGLEVEVIQGSRSRRSSLQLHGMRIAFPVGRQSLVALESRGQR 120
           LVYARHATDREV+ LAD GL VEV QGSRS RS+L   GMRI +PVGRQ+LVALESRGQR
Sbjct: 61  LVYARHATDREVVRLADEGLVVEVTQGSRSSRSTLHWQGMRIDYPVGRQALVALESRGQR 120

Query: 121 VEIGRFMSLWQRRALVQELQQELAARGGGVAALSFL 156
           VE+GRFM+  QRR   +ELQ+EL+AR G +AA+SFL
Sbjct: 121 VEVGRFMNEGQRREFARELQRELSARTGAMAAVSFL 156


>ref|YP_004751212.1| hypothetical protein CFU_0553 [Collimonas fungivorans Ter331]
 gb|AEK60389.1| hypothetical membrane spanning protein [Collimonas fungivorans
           Ter331]
          Length = 151

 Score =  147 bits (371), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 77/143 (53%), Positives = 100/143 (69%)

Query: 1   METREWILKRNCSIAPRQLAWVFAVLCTVSLTVALGFTLRGAWIILVFSCIELVAVGAAM 60
           M  REW L+RNC+IAPRQL + +A+LC  S  VA+GFTL GAW +LVF+ +E+ AV AA 
Sbjct: 1   MIKREWDLRRNCAIAPRQLGFFYAILCATSFAVAIGFTLHGAWFVLVFAVLEMAAVAAAF 60

Query: 61  LVYARHATDREVLVLADHGLEVEVIQGSRSRRSSLQLHGMRIAFPVGRQSLVALESRGQR 120
           LVYA HATDRE + + D  L VE+IQ    RR  L LH +RIA     + L+ +E+ G R
Sbjct: 61  LVYAWHATDREHIAMLDDYLLVELIQAQEVRRFKLDLHAIRIAVQETNKGLIDIEALGTR 120

Query: 121 VEIGRFMSLWQRRALVQELQQEL 143
           VE+GRF++ W+RR  V EL+QEL
Sbjct: 121 VEVGRFLTKWKRREFVLELRQEL 143


>ref|ZP_08273191.1| hypothetical protein IMCC9480_563 [Oxalobacteraceae bacterium
           IMCC9480]
 gb|EGF33335.1| hypothetical protein IMCC9480_563 [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 149

 Score =  125 bits (315), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 71/144 (49%), Positives = 98/144 (68%)

Query: 1   METREWILKRNCSIAPRQLAWVFAVLCTVSLTVALGFTLRGAWIILVFSCIELVAVGAAM 60
           M  +EW LKRNCSI+PRQLA  +A LC VSL +A  FTL GAW++LVFS +EL AVGAA 
Sbjct: 1   MAQQEWTLKRNCSISPRQLARFYASLCFVSLLLAGIFTLGGAWLVLVFSVVELSAVGAAF 60

Query: 61  LVYARHATDREVLVLADHGLEVEVIQGSRSRRSSLQLHGMRIAFPVGRQSLVALESRGQR 120
           L YARHA DRE + L+ + + VE+I+  RSR+ S ++  + I       +L+ + S G +
Sbjct: 61  LYYARHACDRENIWLSGNCVVVELIEADRSRQFSFEISTLLIEASGLPSALIRIRSGGTQ 120

Query: 121 VEIGRFMSLWQRRALVQELQQELA 144
           VE+GR++  ++RR    EL+Q LA
Sbjct: 121 VEVGRYLPYYKRREFASELRQSLA 144


>ref|YP_001354843.1| hypothetical protein mma_3153 [Janthinobacterium sp. Marseille]
 gb|ABR91619.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
          Length = 132

 Score =  119 bits (297), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 62/123 (50%), Positives = 84/123 (68%)

Query: 23  FAVLCTVSLTVALGFTLRGAWIILVFSCIELVAVGAAMLVYARHATDREVLVLADHGLEV 82
           ++VLC VSL +AL FT RGAW IL F+ IEL AVG A L YARHATD E +VL D  L +
Sbjct: 4   YSVLCVVSLIIALSFTWRGAWYILGFAVIELAAVGCAFLCYARHATDCEHIVLTDDLLVI 63

Query: 83  EVIQGSRSRRSSLQLHGMRIAFPVGRQSLVALESRGQRVEIGRFMSLWQRRALVQELQQE 142
            +IQ  ++R+  L  H  ++  P  R  L+ LES G RVE+GRF++ ++RR  ++EL+QE
Sbjct: 64  HLIQADKARQFKLIRHCTKVDPPAKRHRLIGLESSGTRVEVGRFLTEYKRREFIRELRQE 123

Query: 143 LAA 145
           L +
Sbjct: 124 LGS 126


>ref|YP_004684205.1| hypothetical protein CNE_1c03580 [Cupriavidus necator N-1]
 gb|AEI75724.1| hypothetical membrane protein [Cupriavidus necator N-1]
          Length = 169

 Score =  112 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 56/139 (40%), Positives = 88/139 (63%)

Query: 5   EWILKRNCSIAPRQLAWVFAVLCTVSLTVALGFTLRGAWIILVFSCIELVAVGAAMLVYA 64
           +W++KRNCS++PRQ+ W +  + TVSL +AL F  +G+W++L F+ IEL+ +G A+LVYA
Sbjct: 28  DWLMKRNCSLSPRQVGWFYLSILTVSLAIALFFAWQGSWLVLPFASIELIGLGIALLVYA 87

Query: 65  RHATDREVLVLADHGLEVEVIQGSRSRRSSLQLHGMRIAFPVGRQSLVALESRGQRVEIG 124
           RHATD E + + D  L VE   G++  R       +R+      ++LV L S G+ V++G
Sbjct: 88  RHATDYERVSITDGMLVVETASGTKVTRREFNPRWVRVELGESFRALVTLRSGGREVQVG 147

Query: 125 RFMSLWQRRALVQELQQEL 143
            ++  ++RR   QEL   L
Sbjct: 148 CYVDPYRRRKFAQELAAAL 166