BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5296.p (386 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777539.1| cytochrome c oxidase polypeptide II precurso... 721 0.0 ref|YP_004751213.1| cytochrome c oxidase polypeptide II [Collimo... 672 0.0 ref|YP_001101153.1| cytochrome C oxidase polypeptide II (cytochr... 654 0.0 ref|YP_001354842.1| cytochrome c oxidase subunit II [Janthinobac... 647 0.0 ref|ZP_08273192.1| Cytochrome c oxidase polypeptide II [Oxalobac... 600 e-169 >ref|YP_003777539.1| cytochrome c oxidase polypeptide II precursor transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ65631.1| cytochrome c oxidase polypeptide II precursor (cytochrome aa3 subunit 2) transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 386 Score = 721 bits (1862), Expect = 0.0, Method: Composition-based stats. Identities = 367/386 (95%), Positives = 379/386 (98%) Query: 1 MKLAKRLQSLTLGASLLAAGLPAWAVVDSPGGPAVLQMNFQPPVTKIAEQIYGLHILMLI 60 MKLAKRLQSL LGASLLAAGLPAWAVVDSPGGPAVLQMNFQPPVTKIAEQIY LHILMLI Sbjct: 1 MKLAKRLQSLILGASLLAAGLPAWAVVDSPGGPAVLQMNFQPPVTKIAEQIYDLHILMLI 60 Query: 61 ICLVIFVAVFGVMFYSIIKHRKSVGHKAASFHESTTVEIAWTVVPFLIVIGMALPATKTV 120 ICLVIFVAVFGVMFYSIIKHRKSVGHKA++FHEST VEIAWTVVPFLIVIGMALPATKTV Sbjct: 61 ICLVIFVAVFGVMFYSIIKHRKSVGHKASTFHESTAVEIAWTVVPFLIVIGMALPATKTV 120 Query: 121 VAMKDTSNADLTIKVTGMQWKWGYDYLKGDGEGISFLSSLATPREQVTDPTLKKNDNYLI 180 VAMKDTSNADLTIKVTGMQWKWGYDYLKG+GEGISFLS+LATPREQVTDP+LKKNDNYLI Sbjct: 121 VAMKDTSNADLTIKVTGMQWKWGYDYLKGEGEGISFLSNLATPREQVTDPSLKKNDNYLI 180 Query: 181 EVDNPVVVPVNKKVRIVTTANDVIHSWTIPAFGVKQDAIPGFVRDTWFRAEKIGTYRGQC 240 EVDNPVVVPVNKKVRIVTTANDVIHSWTIPAFGVKQDAIPGFVRDTWFRAEKIGTYRGQC Sbjct: 181 EVDNPVVVPVNKKVRIVTTANDVIHSWTIPAFGVKQDAIPGFVRDTWFRAEKIGTYRGQC 240 Query: 241 VELCGKDHAFMPIVVNVVSDDDYKKWVEGKKKEMAAKADDPSKVWTVDELKQRGEKVYAA 300 VELCGKDHAFMPIVVNVVS+DDYK+WV+GKKKEMAAKADDP+K WTVDELKQRGEKVYAA Sbjct: 241 VELCGKDHAFMPIVVNVVSEDDYKQWVDGKKKEMAAKADDPNKTWTVDELKQRGEKVYAA 300 Query: 301 NCVACHQANGKGVPGAFPALDGSALVNGPKDGQIHILLNGKNAMPAWKGVLNDTEIAAVI 360 NCV CHQANGKGVPGAFPALDGS +VNGPKDGQIH++LNGKNAMP WKGVLNDTEIAAVI Sbjct: 301 NCVTCHQANGKGVPGAFPALDGSPVVNGPKDGQIHLVLNGKNAMPPWKGVLNDTEIAAVI 360 Query: 361 TYTRNSWSNKAQENIVQPAEVLAARK 386 TYTRNSWSNKAQENIVQPAEVLAARK Sbjct: 361 TYTRNSWSNKAQENIVQPAEVLAARK 386 >ref|YP_004751213.1| cytochrome c oxidase polypeptide II [Collimonas fungivorans Ter331] gb|AEK60390.1| Cytochrome c oxidase polypeptide II [Collimonas fungivorans Ter331] Length = 390 Score = 672 bits (1734), Expect = 0.0, Method: Composition-based stats. Identities = 328/390 (84%), Positives = 357/390 (91%), Gaps = 4/390 (1%) Query: 1 MKLAKRLQSLTLGASLLAAGLPAWAVVDSPGGPAVLQMNFQPPVTKIAEQIYGLHILMLI 60 M+ AKRL SL LGASLL+A +P+WAVVDSPGGPAVLQMNFQPPVT+IA+QIY LH LMLI Sbjct: 1 MEYAKRLISLMLGASLLSAAMPSWAVVDSPGGPAVLQMNFQPPVTQIAQQIYDLHHLMLI 60 Query: 61 ICLVIFVAVFGVMFYSIIKHRKSVGHKAASFHESTTVEIAWTVVPFLIVIGMALPATKTV 120 ICLVIF+AVFGVMFYSI+KHRKS+GHK+ASFHEST VEIAWTVVPFLIVIGMALPATKTV Sbjct: 61 ICLVIFLAVFGVMFYSILKHRKSLGHKSASFHESTGVEIAWTVVPFLIVIGMALPATKTV 120 Query: 121 VAMKDTSNADLTIKVTGMQWKWGYDYLKGDGEGISFLSSLATPREQVTDPTLKKNDNYLI 180 VAMKDTSNAD+TIKVTGMQWKWGYDYL GDG GISFLS+L+TP EQV D T KNDNYLI Sbjct: 121 VAMKDTSNADVTIKVTGMQWKWGYDYLNGDGAGISFLSNLSTPHEQVVDSTKVKNDNYLI 180 Query: 181 EVDNPVVVPVNKKVRIVTTANDVIHSWTIPAFGVKQDAIPGFVRDTWFRAEKIGTYRGQC 240 EVDNP+VVPVNKKVRI+TTANDVIHSW IPAFGVKQDAIPGFVRDTWF+AEK+GTYRGQC Sbjct: 181 EVDNPMVVPVNKKVRIITTANDVIHSWGIPAFGVKQDAIPGFVRDTWFKAEKVGTYRGQC 240 Query: 241 VELCGKDHAFMPIVVNVVSDDDYKKWVEGKKKEMAAKADDPSKVWTVDELKQRGEKVYAA 300 VELCGKDHAFMPIVVNV+S+ DYK WV+GKKKEMAA+ADDPSK WT+DELKQRGEKVY A Sbjct: 241 VELCGKDHAFMPIVVNVLSEADYKTWVDGKKKEMAAQADDPSKTWTIDELKQRGEKVYTA 300 Query: 301 NCVACHQANGKGVPGAFPALDGSALVNGPKDGQIHILLNGKNA----MPAWKGVLNDTEI 356 NC CHQA GKGVPGAFPALDG +VNGP+ QI+++LNGK MPAWK VL+DTEI Sbjct: 301 NCAVCHQATGKGVPGAFPALDGDPVVNGPRAEQINVVLNGKVTGTMQMPAWKAVLSDTEI 360 Query: 357 AAVITYTRNSWSNKAQENIVQPAEVLAARK 386 AAVITYTRN+WSNKAQENIVQPAEVLAARK Sbjct: 361 AAVITYTRNNWSNKAQENIVQPAEVLAARK 390 >ref|YP_001101153.1| cytochrome C oxidase polypeptide II (cytochrome AA3 subunit 2) transmembrane protein [Herminiimonas arsenicoxydans] emb|CAL63032.1| Cytochrome c oxidase, subunit II (Cytochrome aa3 subunit 2) [Herminiimonas arsenicoxydans] Length = 386 Score = 654 bits (1688), Expect = 0.0, Method: Composition-based stats. Identities = 325/386 (84%), Positives = 353/386 (91%) Query: 1 MKLAKRLQSLTLGASLLAAGLPAWAVVDSPGGPAVLQMNFQPPVTKIAEQIYGLHILMLI 60 MK AKRLQSL LGASLL AGLP+WAV DSPGGPAV Q+NF PVT+IAEQIY LH L+L+ Sbjct: 1 MKHAKRLQSLMLGASLLTAGLPSWAVTDSPGGPAVRQLNFHQPVTQIAEQIYSLHTLLLV 60 Query: 61 ICLVIFVAVFGVMFYSIIKHRKSVGHKAASFHESTTVEIAWTVVPFLIVIGMALPATKTV 120 ICLVIF+AVFGVMFYSI+KHRKSVGHK+A+FHEST VEIAWTVVPFLIVIGMALPATKTV Sbjct: 61 ICLVIFLAVFGVMFYSIVKHRKSVGHKSATFHESTAVEIAWTVVPFLIVIGMALPATKTV 120 Query: 121 VAMKDTSNADLTIKVTGMQWKWGYDYLKGDGEGISFLSSLATPREQVTDPTLKKNDNYLI 180 VAMKDTSNAD+TIK TGMQWKWGYDYL G+G+GI FLS+LATPREQ+TDPTL KN+NYLI Sbjct: 121 VAMKDTSNADITIKATGMQWKWGYDYLAGEGQGIGFLSNLATPREQITDPTLTKNENYLI 180 Query: 181 EVDNPVVVPVNKKVRIVTTANDVIHSWTIPAFGVKQDAIPGFVRDTWFRAEKIGTYRGQC 240 EVDNPVVVPVNKK+RIV TANDVIHSW IP+FGVKQDAIPGFVRDTWF+AEKIGTYRGQC Sbjct: 181 EVDNPVVVPVNKKIRIVLTANDVIHSWMIPSFGVKQDAIPGFVRDTWFKAEKIGTYRGQC 240 Query: 241 VELCGKDHAFMPIVVNVVSDDDYKKWVEGKKKEMAAKADDPSKVWTVDELKQRGEKVYAA 300 ELCGKDHAFMPIVVNVVSD+DYK WV+GKKKEMAA ADDP+K WTVDEL QRGEKVY A Sbjct: 241 AELCGKDHAFMPIVVNVVSDEDYKVWVDGKKKEMAANADDPNKTWTVDELVQRGEKVYTA 300 Query: 301 NCVACHQANGKGVPGAFPALDGSALVNGPKDGQIHILLNGKNAMPAWKGVLNDTEIAAVI 360 NC+ACHQANGKGVPG+FPALD S +V GPK IH+++ GK AMPAWK VL+DTEIAAVI Sbjct: 301 NCIACHQANGKGVPGSFPALDASPIVTGPKAANIHMVMEGKGAMPAWKPVLSDTEIAAVI 360 Query: 361 TYTRNSWSNKAQENIVQPAEVLAARK 386 TYTRN WSNKA ENIVQPAEVLAARK Sbjct: 361 TYTRNHWSNKAAENIVQPAEVLAARK 386 >ref|YP_001354842.1| cytochrome c oxidase subunit II [Janthinobacterium sp. Marseille] gb|ABR90493.1| cytochrome c oxidase subunit II [Janthinobacterium sp. Marseille] Length = 386 Score = 647 bits (1669), Expect = 0.0, Method: Composition-based stats. Identities = 322/386 (83%), Positives = 350/386 (90%) Query: 1 MKLAKRLQSLTLGASLLAAGLPAWAVVDSPGGPAVLQMNFQPPVTKIAEQIYGLHILMLI 60 MK AKRLQSL LGAS LAAG+P+WAV DSPGGPAV Q+NF PVT+IAEQIY LH LMLI Sbjct: 1 MKHAKRLQSLMLGASFLAAGMPSWAVTDSPGGPAVRQLNFHEPVTQIAEQIYSLHTLMLI 60 Query: 61 ICLVIFVAVFGVMFYSIIKHRKSVGHKAASFHESTTVEIAWTVVPFLIVIGMALPATKTV 120 ICLVIFVAVFGVMFYSI KHRKS+GHK+A+FHEST VEIAWTVVPFLIVIGMALPATKTV Sbjct: 61 ICLVIFVAVFGVMFYSIFKHRKSLGHKSATFHESTAVEIAWTVVPFLIVIGMALPATKTV 120 Query: 121 VAMKDTSNADLTIKVTGMQWKWGYDYLKGDGEGISFLSSLATPREQVTDPTLKKNDNYLI 180 VAMKDTSNAD+TIK TGMQWKWGY+YL G+GEGI+FLS+L+TPREQ+ D T KN+NYLI Sbjct: 121 VAMKDTSNADITIKATGMQWKWGYNYLNGEGEGINFLSNLSTPREQIVDNTKVKNENYLI 180 Query: 181 EVDNPVVVPVNKKVRIVTTANDVIHSWTIPAFGVKQDAIPGFVRDTWFRAEKIGTYRGQC 240 EVDNPVVVPVNKK+RIV TANDVIH+W IPAFGVKQDAIPGFVRDTWF+AEKIGTYRGQC Sbjct: 181 EVDNPVVVPVNKKIRIVLTANDVIHAWMIPAFGVKQDAIPGFVRDTWFKAEKIGTYRGQC 240 Query: 241 VELCGKDHAFMPIVVNVVSDDDYKKWVEGKKKEMAAKADDPSKVWTVDELKQRGEKVYAA 300 ELCGKDHAFMPIVVNVVSD+DYK WV+GKKKEMAA ADDP+K WTVDEL QRGEKVY A Sbjct: 241 AELCGKDHAFMPIVVNVVSDEDYKAWVDGKKKEMAANADDPTKTWTVDELVQRGEKVYTA 300 Query: 301 NCVACHQANGKGVPGAFPALDGSALVNGPKDGQIHILLNGKNAMPAWKGVLNDTEIAAVI 360 NC+ACHQANGKGVPG+FPALD S +V GPK IH+++ GK AMPAWK VL+DTEIAAVI Sbjct: 301 NCIACHQANGKGVPGSFPALDASPIVTGPKAANIHMVMEGKGAMPAWKPVLSDTEIAAVI 360 Query: 361 TYTRNSWSNKAQENIVQPAEVLAARK 386 TYTRN WSNKA ENIVQPAEVLAARK Sbjct: 361 TYTRNHWSNKASENIVQPAEVLAARK 386 >ref|ZP_08273192.1| Cytochrome c oxidase polypeptide II [Oxalobacteraceae bacterium IMCC9480] gb|EGF33336.1| Cytochrome c oxidase polypeptide II [Oxalobacteraceae bacterium IMCC9480] Length = 415 Score = 600 bits (1547), Expect = e-169, Method: Composition-based stats. Identities = 294/391 (75%), Positives = 336/391 (85%), Gaps = 6/391 (1%) Query: 1 MKLAKRLQSLTLGASLLAAGLP-AWAVVDSPGGPAVLQMNFQPPVTKIAEQIYGLHILML 59 MK KRLQS+ A+L A+GL A V D PGGPAV Q+N P VTKIAEQIY LH ML Sbjct: 26 MKQVKRLQSMMFAATLAASGLARAAEVQDIPGGPAVRQLNLHPGVTKIAEQIYSLHTFML 85 Query: 60 IICLVIFVAVFGVMFYSIIKHRKSVGHKAASFHESTTVEIAWTVVPFLIVIGMALPATKT 119 IICLVIFVAVFGVMFYSI+KHRKS+GHK+A+FHEST VEIAWT+VPF+IVI MALPAT+T Sbjct: 86 IICLVIFVAVFGVMFYSILKHRKSLGHKSATFHESTAVEIAWTIVPFVIVIAMALPATRT 145 Query: 120 VVAMKDTSNADLTIKVTGMQWKWGYDYLKGDGEGISFLSSLATPREQV----TDPTLKKN 175 VVAMKDTSNAD+TIK TGMQWKWGYDYLKG+GEGI+FLS+L+TPR Q+ PT + Sbjct: 146 VVAMKDTSNADITIKATGMQWKWGYDYLKGEGEGIAFLSNLSTPRSQIGAPGVAPTEPRG 205 Query: 176 DNYLIEVDNPVVVPVNKKVRIVTTANDVIHSWTIPAFGVKQDAIPGFVRDTWFRAEKIGT 235 +NYL+EVDN +VVPV +K+RI+TTANDVIH+W +P GV+QDAIPGFVRD WF+AE+ GT Sbjct: 206 NNYLLEVDNEMVVPVGRKIRIITTANDVIHAWGMPMLGVQQDAIPGFVRDAWFKAEEAGT 265 Query: 236 YRGQCVELCGKDHAFMPIVVNVVSDDDYKKWVEGKKKEMAAKADDPSKVWTVDELKQRGE 295 +RGQC +LCG +HA+MPIVV VSD DYK WV+GKKKEMA+ ADDP+KV+TVDELKQRGE Sbjct: 266 FRGQCDKLCGAEHAYMPIVVRAVSDADYKIWVDGKKKEMASLADDPNKVYTVDELKQRGE 325 Query: 296 KVYAANCVACHQANGKGVPGAFPALDGSALVNGPKDGQIHILLNGKNAMPAWKGVLNDTE 355 KVY+ NCVACHQA GKGVPGAFPALDGS +VNG K QIH+LLNGKNAMPAWK L+DT+ Sbjct: 326 KVYSTNCVACHQATGKGVPGAFPALDGSLVVNGVKADQIHLLLNGKNAMPAWKS-LSDTD 384 Query: 356 IAAVITYTRNSWSNKAQENIVQPAEVLAARK 386 IAAVITYTRNSWSNKA ENIVQPAEVLAARK Sbjct: 385 IAAVITYTRNSWSNKAAENIVQPAEVLAARK 415