BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5295.p (539 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777538.1| cytochrome c oxidase polypeptide I transmemb... 890 0.0 ref|YP_003746885.1| cytochrome C oxidase polypeptide i (cytochro... 870 0.0 ref|NP_518484.1| cytochrome C oxidase polypeptide I [Ralstonia s... 870 0.0 emb|CBJ39293.1| cytochrome C oxidase polypeptide I (cytochrome A... 868 0.0 ref|YP_001897813.1| cytochrome c oxidase subunit I [Ralstonia pi... 853 0.0 >ref|YP_003777538.1| cytochrome c oxidase polypeptide I transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ65630.1| cytochrome c oxidase polypeptide I (cytochrome aa3 subunit 1) transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 539 Score = 890 bits (2300), Expect = 0.0, Method: Composition-based stats. Identities = 536/539 (99%), Positives = 537/539 (99%) Query: 1 MTTTADHAPDHSHDHGHGHAHDDHAHDHPHGWRRWLFATNHKDIGTLYLWFSFTMLLSGG 60 MTTT DHAPDHSHDHGHGHAHDDHAHDHPHGWRRWLFATNHKDIGTLYLWFSFTMLLSGG Sbjct: 1 MTTTVDHAPDHSHDHGHGHAHDDHAHDHPHGWRRWLFATNHKDIGTLYLWFSFTMLLSGG 60 Query: 61 VLALLIRAELFQPGLQFFRPEFFNQLTTMHGLVMVFGAIMPAFVGFANWMIPLQIGASDM 120 VLALLIRAELFQPGLQFFRPEFFNQLTTMHGLVMVFGAIMPAFVGFANWMIPLQIGASDM Sbjct: 61 VLALLIRAELFQPGLQFFRPEFFNQLTTMHGLVMVFGAIMPAFVGFANWMIPLQIGASDM 120 Query: 121 AFARMNNFSFWLLPPAALLLAGSFLVPGGATAAGWTLYAPLSTQMGPGMDMGIFAMHIMG 180 AFARMNNFSFWLLPPAALLLAGSFLVPGGATAAGWTLYAPLSTQMGPGMDMGIFAMHIMG Sbjct: 121 AFARMNNFSFWLLPPAALLLAGSFLVPGGATAAGWTLYAPLSTQMGPGMDMGIFAMHIMG 180 Query: 181 ASSIMGSINIIVTILNMRAPGMTLMKMPMFCWTWLITAYLLIAVMPVLAGAITMTLTDRH 240 ASSIMGSINIIVTILNMRAPGMTLMKMPMFCWTWLITAYLLIAVMPVLAGAITMTLTDRH Sbjct: 181 ASSIMGSINIIVTILNMRAPGMTLMKMPMFCWTWLITAYLLIAVMPVLAGAITMTLTDRH 240 Query: 241 FGTSFFNAAGGGDPVMYQHIFWFFGHPEVYIMILPAFGIVSQIIPAFARKALFGYASMVY 300 FGTSFFNAAGGGDPVMYQHIFWFFGHPEVYIMILPAFGIVSQIIPAFARK LFGYASMVY Sbjct: 241 FGTSFFNAAGGGDPVMYQHIFWFFGHPEVYIMILPAFGIVSQIIPAFARKPLFGYASMVY 300 Query: 301 ATASIAILSFIVWAHHMFTTGMPVTAQLFFMYATMLIAVPTGVKIFNWIATMWRGSMTFE 360 ATASIAILSFIVWAHHMFTTGMPVTAQLFFMYATMLIAVPTGVKIFNWIATMWRGSMTFE Sbjct: 301 ATASIAILSFIVWAHHMFTTGMPVTAQLFFMYATMLIAVPTGVKIFNWIATMWRGSMTFE 360 Query: 361 TPMLFSVGFIFVFTMGGFTGLILAVTPIDIQMQDTYYVVAHFHYVLVAGSLFALFAGYYY 420 TPMLFSVGFIFVFTMGGFTGLILAVTPIDIQMQDTYYVVAHFHYVLVAGSLFALFAGYYY Sbjct: 361 TPMLFSVGFIFVFTMGGFTGLILAVTPIDIQMQDTYYVVAHFHYVLVAGSLFALFAGYYY 420 Query: 421 WGPKWTGFMYNEWRGKFHFWASLITFNITFFPMHFLGLAGMPRRYADYPAQFTDFNMIAS 480 WGPKWTGFMYNEWRGKFHFWASLITFNITFFPMHFLGLAGMPRRYADYPAQFTDFNMIAS Sbjct: 421 WGPKWTGFMYNEWRGKFHFWASLITFNITFFPMHFLGLAGMPRRYADYPAQFTDFNMIAS 480 Query: 481 IGAFGFGLSQVYFLFFVVIPSIKGGKKAEAKPWEGAEGLEWTVPSPAPFHTFEEPPVVK 539 IGAFGFGLSQVYFLFFVVIPSIKGGK+AEAKPWEGAEGLEWTVPSPAPFHTFEEPPVVK Sbjct: 481 IGAFGFGLSQVYFLFFVVIPSIKGGKQAEAKPWEGAEGLEWTVPSPAPFHTFEEPPVVK 539 >ref|YP_003746885.1| cytochrome C oxidase polypeptide i (cytochrome aa3 subunit 1) [Ralstonia solanacearum CFBP2957] emb|CBJ44302.1| cytochrome C oxidase polypeptide I (cytochrome AA3 subunit 1) [Ralstonia solanacearum CFBP2957] Length = 534 Score = 870 bits (2248), Expect = 0.0, Method: Composition-based stats. Identities = 475/539 (88%), Positives = 499/539 (92%), Gaps = 5/539 (0%) Query: 1 MTTTADHAPDHSHDHGHGHAHDDHAHDHPHGWRRWLFATNHKDIGTLYLWFSFTMLLSGG 60 M+T H DH+H HG DDHAHDHPHGWRRWLFATNHKDIGTLYL FSF MLLSGG Sbjct: 1 MSTAITHPQDHAHGHG-----DDHAHDHPHGWRRWLFATNHKDIGTLYLLFSFAMLLSGG 55 Query: 61 VLALLIRAELFQPGLQFFRPEFFNQLTTMHGLVMVFGAIMPAFVGFANWMIPLQIGASDM 120 LALLIR ELF+PGLQFF PE FNQ TT+HGLVMVFGAIMPAFVGFANWMIPLQ+GASDM Sbjct: 56 TLALLIRLELFEPGLQFFHPELFNQFTTLHGLVMVFGAIMPAFVGFANWMIPLQVGASDM 115 Query: 121 AFARMNNFSFWLLPPAALLLAGSFLVPGGATAAGWTLYAPLSTQMGPGMDMGIFAMHIMG 180 AFARMNNFSFWLLPPAA+LL GSF VPGGATAAGWTLYAPLS QMGPGMDM IFA+HIMG Sbjct: 116 AFARMNNFSFWLLPPAAILLVGSFFVPGGATAAGWTLYAPLSVQMGPGMDMAIFAVHIMG 175 Query: 181 ASSIMGSINIIVTILNMRAPGMTLMKMPMFCWTWLITAYLLIAVMPVLAGAITMTLTDRH 240 ASSIMGSINIIVTILNMRAPGMTLMKMPMFCWTWLITAYLLIAVMPVLAGAITM LTDRH Sbjct: 176 ASSIMGSINIIVTILNMRAPGMTLMKMPMFCWTWLITAYLLIAVMPVLAGAITMVLTDRH 235 Query: 241 FGTSFFNAAGGGDPVMYQHIFWFFGHPEVYIMILPAFGIVSQIIPAFARKALFGYASMVY 300 FGTSFF+AAGGGDPVMYQHIFWFFGHPEVYIMILPAFGIVSQI+PAFARK LFGY+SMVY Sbjct: 236 FGTSFFSAAGGGDPVMYQHIFWFFGHPEVYIMILPAFGIVSQIVPAFARKPLFGYSSMVY 295 Query: 301 ATASIAILSFIVWAHHMFTTGMPVTAQLFFMYATMLIAVPTGVKIFNWIATMWRGSMTFE 360 ATASIAILSFIVWAHHMFTTGMPVT QLFFMYATMLIAVPTGVKIFNWIATMWRGSMTFE Sbjct: 296 ATASIAILSFIVWAHHMFTTGMPVTGQLFFMYATMLIAVPTGVKIFNWIATMWRGSMTFE 355 Query: 361 TPMLFSVGFIFVFTMGGFTGLILAVTPIDIQMQDTYYVVAHFHYVLVAGSLFALFAGYYY 420 TPMLF++GFIFVFT+GGFTGLILAV PIDIQ+QDTYYVVAHFHYVLVAGSLFALFAG+YY Sbjct: 356 TPMLFALGFIFVFTIGGFTGLILAVAPIDIQLQDTYYVVAHFHYVLVAGSLFALFAGFYY 415 Query: 421 WGPKWTGFMYNEWRGKFHFWASLITFNITFFPMHFLGLAGMPRRYADYPAQFTDFNMIAS 480 WGPKW+G+MYNE RG+ HFW S+I FN+TFFPMHFLGLAGMPRRYADYP QF DFN IAS Sbjct: 416 WGPKWSGYMYNETRGQIHFWGSMIFFNLTFFPMHFLGLAGMPRRYADYPQQFADFNAIAS 475 Query: 481 IGAFGFGLSQVYFLFFVVIPSIKGGKKAEAKPWEGAEGLEWTVPSPAPFHTFEEPPVVK 539 IGA GFGL QVYF FFVV+PS +GG+KA KPWEGAEGLEWTVPSPAPFHTFEEPP V+ Sbjct: 476 IGALGFGLMQVYFFFFVVLPSYRGGEKAIDKPWEGAEGLEWTVPSPAPFHTFEEPPHVR 534 >ref|NP_518484.1| cytochrome C oxidase polypeptide I [Ralstonia solanacearum GMI1000] emb|CAD13891.1| probable cytochrome c oxidase polypeptideI(cytochrome aa3 subunit 1) transmembrane protein [Ralstonia solanacearum GMI1000] Length = 534 Score = 870 bits (2247), Expect = 0.0, Method: Composition-based stats. Identities = 475/539 (88%), Positives = 500/539 (92%), Gaps = 5/539 (0%) Query: 1 MTTTADHAPDHSHDHGHGHAHDDHAHDHPHGWRRWLFATNHKDIGTLYLWFSFTMLLSGG 60 M+T H DH+H HG DDHAHDHPHGWRRWLFATNHKDIGTLYL FSFTMLLSGG Sbjct: 1 MSTAITHPQDHAHGHG-----DDHAHDHPHGWRRWLFATNHKDIGTLYLLFSFTMLLSGG 55 Query: 61 VLALLIRAELFQPGLQFFRPEFFNQLTTMHGLVMVFGAIMPAFVGFANWMIPLQIGASDM 120 LALLIR ELF+PGLQFF PE FNQ TT+HGLVMVFGAIMPAFVGFANWMIPLQ+GASDM Sbjct: 56 TLALLIRLELFEPGLQFFHPELFNQFTTLHGLVMVFGAIMPAFVGFANWMIPLQVGASDM 115 Query: 121 AFARMNNFSFWLLPPAALLLAGSFLVPGGATAAGWTLYAPLSTQMGPGMDMGIFAMHIMG 180 AFARMNNFSFWLLPPAA+LL GSF VPGGATAAGWTLYAPLS QMGPGMDM IFA+HIMG Sbjct: 116 AFARMNNFSFWLLPPAAILLVGSFFVPGGATAAGWTLYAPLSVQMGPGMDMAIFAVHIMG 175 Query: 181 ASSIMGSINIIVTILNMRAPGMTLMKMPMFCWTWLITAYLLIAVMPVLAGAITMTLTDRH 240 ASSIMG+INIIVTILNMRAPGMTLMKMPMFCWTWLITAYLLIAVMPVLAGAITM LTDRH Sbjct: 176 ASSIMGAINIIVTILNMRAPGMTLMKMPMFCWTWLITAYLLIAVMPVLAGAITMVLTDRH 235 Query: 241 FGTSFFNAAGGGDPVMYQHIFWFFGHPEVYIMILPAFGIVSQIIPAFARKALFGYASMVY 300 FGTSFF+AAGGGDPVMYQHIFWFFGHPEVYIMILPAFGIVSQI+PAFARK LFGY+SMVY Sbjct: 236 FGTSFFSAAGGGDPVMYQHIFWFFGHPEVYIMILPAFGIVSQIVPAFARKPLFGYSSMVY 295 Query: 301 ATASIAILSFIVWAHHMFTTGMPVTAQLFFMYATMLIAVPTGVKIFNWIATMWRGSMTFE 360 ATASIAILSFIVWAHHMFTTGMPVT QLFFMYATMLIAVPTGVKIFNWIATMWRGSMTFE Sbjct: 296 ATASIAILSFIVWAHHMFTTGMPVTGQLFFMYATMLIAVPTGVKIFNWIATMWRGSMTFE 355 Query: 361 TPMLFSVGFIFVFTMGGFTGLILAVTPIDIQMQDTYYVVAHFHYVLVAGSLFALFAGYYY 420 TPMLF++GFIFVFT+GGFTGLILAV PIDIQ+QDTYYVVAHFHYVLVAGSLFALFAG+YY Sbjct: 356 TPMLFALGFIFVFTIGGFTGLILAVAPIDIQLQDTYYVVAHFHYVLVAGSLFALFAGFYY 415 Query: 421 WGPKWTGFMYNEWRGKFHFWASLITFNITFFPMHFLGLAGMPRRYADYPAQFTDFNMIAS 480 WGPKW+G+MYNE RG+ HFW S+I FN+TFFPMHFLGLAGMPRRYADYP QF DFN IAS Sbjct: 416 WGPKWSGYMYNETRGQIHFWGSMIFFNLTFFPMHFLGLAGMPRRYADYPQQFADFNAIAS 475 Query: 481 IGAFGFGLSQVYFLFFVVIPSIKGGKKAEAKPWEGAEGLEWTVPSPAPFHTFEEPPVVK 539 IGA GFGL QVYF FFVV+PS +GG+KA KPW+GAEGLEWTVPSPAPFHTFEEPP VK Sbjct: 476 IGALGFGLMQVYFFFFVVLPSYRGGEKAADKPWDGAEGLEWTVPSPAPFHTFEEPPHVK 534 >emb|CBJ39293.1| cytochrome C oxidase polypeptide I (cytochrome AA3 subunit 1) [Ralstonia solanacearum CMR15] Length = 534 Score = 868 bits (2243), Expect = 0.0, Method: Composition-based stats. Identities = 473/539 (87%), Positives = 500/539 (92%), Gaps = 5/539 (0%) Query: 1 MTTTADHAPDHSHDHGHGHAHDDHAHDHPHGWRRWLFATNHKDIGTLYLWFSFTMLLSGG 60 M+T H DH+H HG DDHAHDHPHGWRRWLFATNHKDIGTLYL FSFTMLLSGG Sbjct: 1 MSTAITHPQDHAHGHG-----DDHAHDHPHGWRRWLFATNHKDIGTLYLLFSFTMLLSGG 55 Query: 61 VLALLIRAELFQPGLQFFRPEFFNQLTTMHGLVMVFGAIMPAFVGFANWMIPLQIGASDM 120 LALLIR ELF+PGLQFF PE FNQ TT+HGLVMVFGAIMPAFVGFANWMIPLQ+GASDM Sbjct: 56 TLALLIRLELFEPGLQFFHPELFNQFTTLHGLVMVFGAIMPAFVGFANWMIPLQVGASDM 115 Query: 121 AFARMNNFSFWLLPPAALLLAGSFLVPGGATAAGWTLYAPLSTQMGPGMDMGIFAMHIMG 180 AFARMNNFSFWLLPPAA+LL GSF VPGGATAAGWTLYAPLS QMGPGMDM IFA+HIMG Sbjct: 116 AFARMNNFSFWLLPPAAILLVGSFFVPGGATAAGWTLYAPLSVQMGPGMDMAIFAVHIMG 175 Query: 181 ASSIMGSINIIVTILNMRAPGMTLMKMPMFCWTWLITAYLLIAVMPVLAGAITMTLTDRH 240 ASSIMG+INIIVTILNMRAPGMTLMKMPMFCWTWLITAYLLIAVMPVLAGAITM LTDRH Sbjct: 176 ASSIMGAINIIVTILNMRAPGMTLMKMPMFCWTWLITAYLLIAVMPVLAGAITMVLTDRH 235 Query: 241 FGTSFFNAAGGGDPVMYQHIFWFFGHPEVYIMILPAFGIVSQIIPAFARKALFGYASMVY 300 FGTSFF+AAGGGDPVMYQHIFWFFGHPEVYIMILPAFGI+SQI+PAFARK LFGY+SMVY Sbjct: 236 FGTSFFSAAGGGDPVMYQHIFWFFGHPEVYIMILPAFGIISQIVPAFARKPLFGYSSMVY 295 Query: 301 ATASIAILSFIVWAHHMFTTGMPVTAQLFFMYATMLIAVPTGVKIFNWIATMWRGSMTFE 360 ATASIAILSFIVWAHHMFTTGMPVT QLFFMYATMLIAVPTGVKIFNWIATMWRGSMTFE Sbjct: 296 ATASIAILSFIVWAHHMFTTGMPVTGQLFFMYATMLIAVPTGVKIFNWIATMWRGSMTFE 355 Query: 361 TPMLFSVGFIFVFTMGGFTGLILAVTPIDIQMQDTYYVVAHFHYVLVAGSLFALFAGYYY 420 TPMLF++GFIFVFT+GGFTGLILAV P+DIQ+QDTYYVVAHFHYVLVAGSLFALFAG+YY Sbjct: 356 TPMLFALGFIFVFTIGGFTGLILAVAPVDIQLQDTYYVVAHFHYVLVAGSLFALFAGFYY 415 Query: 421 WGPKWTGFMYNEWRGKFHFWASLITFNITFFPMHFLGLAGMPRRYADYPAQFTDFNMIAS 480 WGPKW+G+MYNE RG+ HFW S+I FN+TFFPMHFLGLAGMPRRYADYP QF DFN IAS Sbjct: 416 WGPKWSGYMYNETRGQIHFWGSMIFFNLTFFPMHFLGLAGMPRRYADYPQQFADFNAIAS 475 Query: 481 IGAFGFGLSQVYFLFFVVIPSIKGGKKAEAKPWEGAEGLEWTVPSPAPFHTFEEPPVVK 539 IGA GFGL QVYF FFVV+PS +GG+KA KPW+GAEGLEWTVPSPAPFHTFEEPP VK Sbjct: 476 IGALGFGLMQVYFFFFVVLPSYRGGEKALDKPWDGAEGLEWTVPSPAPFHTFEEPPHVK 534 >ref|YP_001897813.1| cytochrome c oxidase subunit I [Ralstonia pickettii 12J] ref|ZP_07674727.1| cytochrome c oxidase, subunit I [Ralstonia sp. 5_7_47FAA] gb|ACD25381.1| cytochrome c oxidase, subunit I [Ralstonia pickettii 12J] gb|EFP66975.1| cytochrome c oxidase, subunit I [Ralstonia sp. 5_7_47FAA] Length = 534 Score = 853 bits (2204), Expect = 0.0, Method: Composition-based stats. Identities = 474/539 (87%), Positives = 499/539 (92%), Gaps = 5/539 (0%) Query: 1 MTTTADHAPDHSHDHGHGHAHDDHAHDHPHGWRRWLFATNHKDIGTLYLWFSFTMLLSGG 60 M+T H DH+H HG DDHAHDHPHGWRRWLFATNHKDIGTLYL FSF MLLSGG Sbjct: 1 MSTAVTHPQDHAHGHG-----DDHAHDHPHGWRRWLFATNHKDIGTLYLLFSFMMLLSGG 55 Query: 61 VLALLIRAELFQPGLQFFRPEFFNQLTTMHGLVMVFGAIMPAFVGFANWMIPLQIGASDM 120 LALLIR ELFQPGLQFF PE FNQ TT+HGL+MVFGAIMPAFVGFANWMIPLQ+GASDM Sbjct: 56 TLALLIRLELFQPGLQFFHPELFNQFTTLHGLIMVFGAIMPAFVGFANWMIPLQVGASDM 115 Query: 121 AFARMNNFSFWLLPPAALLLAGSFLVPGGATAAGWTLYAPLSTQMGPGMDMGIFAMHIMG 180 AFARMNNFSFWLLPPAALLL GSF PGGATAAGWTLYAPLS QMGPGMDM IFA+HIMG Sbjct: 116 AFARMNNFSFWLLPPAALLLVGSFFAPGGATAAGWTLYAPLSVQMGPGMDMAIFAIHIMG 175 Query: 181 ASSIMGSINIIVTILNMRAPGMTLMKMPMFCWTWLITAYLLIAVMPVLAGAITMTLTDRH 240 ASSIMG+INIIVTILNMRAPGMTLMKMPMFCWTWLITAYLLIAVMPVLAGAITM LTDRH Sbjct: 176 ASSIMGAINIIVTILNMRAPGMTLMKMPMFCWTWLITAYLLIAVMPVLAGAITMVLTDRH 235 Query: 241 FGTSFFNAAGGGDPVMYQHIFWFFGHPEVYIMILPAFGIVSQIIPAFARKALFGYASMVY 300 FGTSFF+AAGGGDPVMYQHIFWFFGHPEVYIMILPAFGIVSQI+PAFARK LFGY+SMVY Sbjct: 236 FGTSFFSAAGGGDPVMYQHIFWFFGHPEVYIMILPAFGIVSQIVPAFARKPLFGYSSMVY 295 Query: 301 ATASIAILSFIVWAHHMFTTGMPVTAQLFFMYATMLIAVPTGVKIFNWIATMWRGSMTFE 360 ATASIAILSFIVWAHHMFTTGMPVT QLFFMYATMLIAVPTGVKIFNW+ATMWRGSMTFE Sbjct: 296 ATASIAILSFIVWAHHMFTTGMPVTGQLFFMYATMLIAVPTGVKIFNWVATMWRGSMTFE 355 Query: 361 TPMLFSVGFIFVFTMGGFTGLILAVTPIDIQMQDTYYVVAHFHYVLVAGSLFALFAGYYY 420 TPMLF++GFIFVFT+GGFTGLILAV PIDIQ+QDTYYVVAHFHYVLVAGSLFALFAG+YY Sbjct: 356 TPMLFAIGFIFVFTVGGFTGLILAVAPIDIQLQDTYYVVAHFHYVLVAGSLFALFAGFYY 415 Query: 421 WGPKWTGFMYNEWRGKFHFWASLITFNITFFPMHFLGLAGMPRRYADYPAQFTDFNMIAS 480 WGPKW+G+MY+E RGK HFW S+ITFN+TFFPMHFLGLAGMPRRYADYP QF DFN IAS Sbjct: 416 WGPKWSGYMYSETRGKIHFWGSMITFNLTFFPMHFLGLAGMPRRYADYPQQFADFNAIAS 475 Query: 481 IGAFGFGLSQVYFLFFVVIPSIKGGKKAEAKPWEGAEGLEWTVPSPAPFHTFEEPPVVK 539 IGA GFGL QVYF FFVV+PS +GG+KA KPW+GAEGLEWTVPSPAPFHTFEEPP VK Sbjct: 476 IGALGFGLMQVYFFFFVVLPSYRGGEKAADKPWDGAEGLEWTVPSPAPFHTFEEPPHVK 534