BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5293.p (190 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777537.1| cytochrome C oxidase assembly transmembrane ... 341 3e-92 ref|YP_004751216.1| cytochrome oxidase biogenesis protein Cox11-... 296 9e-79 ref|YP_001354840.1| cytochrome c oxidase subunit XI assembly pro... 256 1e-66 ref|YP_001101150.1| cytochrome C oxidase assembly protein [Hermi... 250 8e-65 ref|YP_002980220.1| cytochrome C oxidase assembly protein [Ralst... 237 8e-61 >ref|YP_003777537.1| cytochrome C oxidase assembly transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ65629.1| cytochrome C oxidase assembly transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 190 Score = 341 bits (875), Expect = 3e-92, Method: Composition-based stats. Identities = 174/190 (91%), Positives = 180/190 (94%) Query: 1 MSRDDDQVEETTSRGLNRVMFRKLLVVAVLMFGFGYALIPVYRKICEVTGVNFLTPKDVT 60 MS+ DD +++ RGLNRVM RKLLVVAVLMFGFGYALIPVYRKICEVTGVNFLTPKDVT Sbjct: 1 MSQHDDPLQDQEERGLNRVMLRKLLVVAVLMFGFGYALIPVYRKICEVTGVNFLTPKDVT 60 Query: 61 VEAPANTQIDKTRTITVEFDGNAQGPWRFRPTVASMQVHPGEMTQVTYEVVNTQPRNVDA 120 VEAPANTQIDK+RTITVEFDGNAQGPWRFRPTV SMQVHPGEMTQVTYEVVNTQ RNVDA Sbjct: 61 VEAPANTQIDKSRTITVEFDGNAQGPWRFRPTVTSMQVHPGEMTQVTYEVVNTQSRNVDA 120 Query: 121 QAIPSYAPLQSAAFFKKVECFCFTQQTLGPNQAKQMPVVFYIDPKLPKEVTTITLSYTFF 180 QAIPSYAP QSAAFFKKVECFCFTQQTLGPNQAKQMPVVFYIDPKLPK+VTTITLSYTFF Sbjct: 121 QAIPSYAPQQSAAFFKKVECFCFTQQTLGPNQAKQMPVVFYIDPKLPKDVTTITLSYTFF 180 Query: 181 EINGKAKTAG 190 EINGK KTAG Sbjct: 181 EINGKDKTAG 190 >ref|YP_004751216.1| cytochrome oxidase biogenesis protein Cox11-CtaG, copper delivery to Cox1 [Collimonas fungivorans Ter331] gb|AEK60393.1| Cytochrome oxidase biogenesis protein Cox11-CtaG, copper delivery to Cox1 [Collimonas fungivorans Ter331] Length = 193 Score = 296 bits (758), Expect = 9e-79, Method: Composition-based stats. Identities = 145/178 (81%), Positives = 160/178 (89%) Query: 13 SRGLNRVMFRKLLVVAVLMFGFGYALIPVYRKICEVTGVNFLTPKDVTVEAPANTQIDKT 72 SR LN+ M KLLV+AVLMFGFGY L+PVY+KICEVTGVNFLTPKD TVEAPANTQ+DK+ Sbjct: 16 SRKLNKQMLGKLLVIAVLMFGFGYGLVPVYKKICEVTGVNFLTPKDATVEAPANTQVDKS 75 Query: 73 RTITVEFDGNAQGPWRFRPTVASMQVHPGEMTQVTYEVVNTQPRNVDAQAIPSYAPLQSA 132 RTITVEFDGN+QGPWRFRPTV+S+QVHPGEMTQV YEVVN Q R +DAQAIPSYAP Q+A Sbjct: 76 RTITVEFDGNSQGPWRFRPTVSSLQVHPGEMTQVVYEVVNKQSRKMDAQAIPSYAPQQAA 135 Query: 133 AFFKKVECFCFTQQTLGPNQAKQMPVVFYIDPKLPKEVTTITLSYTFFEINGKAKTAG 190 AFFKKVECFCFTQQTLGPNQAK+MPVVFYIDP +PK+V ITLSYTFFEI G+ AG Sbjct: 136 AFFKKVECFCFTQQTLGPNQAKEMPVVFYIDPAIPKDVKLITLSYTFFEIAGQPDKAG 193 >ref|YP_001354840.1| cytochrome c oxidase subunit XI assembly protein [Janthinobacterium sp. Marseille] gb|ABR88511.1| cytochrome c oxidase subunit XI assembly protein [Janthinobacterium sp. Marseille] Length = 199 Score = 256 bits (654), Expect = 1e-66, Method: Composition-based stats. Identities = 126/185 (68%), Positives = 153/185 (82%) Query: 5 DDQVEETTSRGLNRVMFRKLLVVAVLMFGFGYALIPVYRKICEVTGVNFLTPKDVTVEAP 64 ++Q E+ LN MF KL+V+AV+MFGFGY L+P+Y++ICE+TGVN LT +++ V+ Sbjct: 2 ENQTEDQKHSKLNTQMFGKLVVIAVMMFGFGYLLVPIYKQICEITGVNILTSQEMKVKPI 61 Query: 65 ANTQIDKTRTITVEFDGNAQGPWRFRPTVASMQVHPGEMTQVTYEVVNTQPRNVDAQAIP 124 N+Q+DK+RTITVEFD N QGP+RFRPTV SMQVHPGEM Q+ YEVVNTQ R+V+AQAIP Sbjct: 62 DNSQVDKSRTITVEFDANTQGPFRFRPTVNSMQVHPGEMAQIVYEVVNTQARSVEAQAIP 121 Query: 125 SYAPLQSAAFFKKVECFCFTQQTLGPNQAKQMPVVFYIDPKLPKEVTTITLSYTFFEING 184 SYAP Q+AA FKKVECFCF QQTL +QAKQMPVVFY+DP LPK+V TITLSYTFFEI G Sbjct: 122 SYAPQQAAAHFKKVECFCFQQQTLEASQAKQMPVVFYLDPALPKDVKTITLSYTFFEIAG 181 Query: 185 KAKTA 189 + K A Sbjct: 182 REKKA 186 >ref|YP_001101150.1| cytochrome C oxidase assembly protein [Herminiimonas arsenicoxydans] emb|CAL63029.1| Cytochrome c oxidase assembly protein CtaG [Herminiimonas arsenicoxydans] Length = 192 Score = 250 bits (638), Expect = 8e-65, Method: Composition-based stats. Identities = 127/185 (68%), Positives = 153/185 (82%), Gaps = 2/185 (1%) Query: 5 DDQVEETTSRGLNRVMFRKLLVVAVLMFGFGYALIPVYRKICEVTGVNFLTPKDVTVEAP 64 ++Q E T LN MF KL V+AV+MFGFGY L+P+Y++ICE+TGVN LT +++ V+ Sbjct: 2 ENQTESTGK--LNGRMFGKLAVIAVMMFGFGYLLVPIYKQICELTGVNILTSQEMKVKPI 59 Query: 65 ANTQIDKTRTITVEFDGNAQGPWRFRPTVASMQVHPGEMTQVTYEVVNTQPRNVDAQAIP 124 N+QIDK+RTITVEFD N GP+RFRPTV+SMQVHPGEM+QV YEVVNTQ R+V+AQAIP Sbjct: 60 DNSQIDKSRTITVEFDANTTGPFRFRPTVSSMQVHPGEMSQVLYEVVNTQARSVEAQAIP 119 Query: 125 SYAPLQSAAFFKKVECFCFTQQTLGPNQAKQMPVVFYIDPKLPKEVTTITLSYTFFEING 184 SYAP Q+AA FKKVECFCF Q+TLGPNQAKQMPVVFY+DP LP++V TITLSYTFFE+ Sbjct: 120 SYAPQQAAAHFKKVECFCFQQETLGPNQAKQMPVVFYLDPALPRDVKTITLSYTFFEVAK 179 Query: 185 KAKTA 189 K A Sbjct: 180 PEKQA 184 >ref|YP_002980220.1| cytochrome C oxidase assembly protein [Ralstonia pickettii 12D] gb|ACS61548.1| cytochrome c oxidase assembly protein CtaG/Cox11 [Ralstonia pickettii 12D] Length = 202 Score = 237 bits (604), Expect = 8e-61, Method: Composition-based stats. Identities = 115/186 (61%), Positives = 143/186 (76%) Query: 4 DDDQVEETTSRGLNRVMFRKLLVVAVLMFGFGYALIPVYRKICEVTGVNFLTPKDVTVEA 63 D Q ++ RGLNR M KL VV V+MFGFGYA++P+Y+KICE+T +N L +D A Sbjct: 9 DPTQNDKALERGLNRSMLGKLAVVVVIMFGFGYAMVPLYKKICEITNINVLNTRDEDGGA 68 Query: 64 PANTQIDKTRTITVEFDGNAQGPWRFRPTVASMQVHPGEMTQVTYEVVNTQPRNVDAQAI 123 N+Q+DKTRTITVEFD N+QGP+RFRP SM VHPGE++Q+ YEVVN + R V+AQAI Sbjct: 69 LRNSQVDKTRTITVEFDSNSQGPFRFRPVKNSMDVHPGEISQIVYEVVNKEGRTVEAQAI 128 Query: 124 PSYAPLQSAAFFKKVECFCFTQQTLGPNQAKQMPVVFYIDPKLPKEVTTITLSYTFFEIN 183 PSYAP Q+ FFKK+ECFCF QQTL N++++MPVVF IDP LPK+V TITLSYTFFEI+ Sbjct: 129 PSYAPKQATEFFKKIECFCFKQQTLTANESREMPVVFVIDPDLPKDVKTITLSYTFFEIH 188 Query: 184 GKAKTA 189 + A Sbjct: 189 APSAIA 194