BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.5292.p         (58 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_004751217.1| hypothetical protein CFU_0558 [Collimonas fu...    82   2e-14
ref|YP_003777536.1| transmembrane protein [Herbaspirillum serope...    80   1e-13
ref|YP_003746882.1| hypothetical protein RCFBP_21121 [Ralstonia ...    69   2e-10
ref|YP_003753655.1| hypothetical protein RPSI07_3043 [Ralstonia ...    69   2e-10
ref|NP_518487.1| hypothetical protein RSc0366 [Ralstonia solanac...    69   3e-10

>ref|YP_004751217.1| hypothetical protein CFU_0558 [Collimonas fungivorans Ter331]
 gb|AEK60394.1| putative membrane protein [Collimonas fungivorans Ter331]
          Length = 71

 Score = 82.0 bits (201), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/52 (84%), Positives = 51/52 (98%)

Query: 1  MKAVFWSFFGVRKRKDYESDAARLNPVHVIIAGILGAVIFVAVLVSIVKLVV 52
          MKAVFWSFFGVRKRKDYE+DAA LNPVHV+IAGILGA+IF+A+L++IVKLVV
Sbjct: 18 MKAVFWSFFGVRKRKDYENDAASLNPVHVVIAGILGALIFIAILITIVKLVV 69


>ref|YP_003777536.1| transmembrane protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ65628.1| transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 81

 Score = 79.7 bits (195), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 52/57 (91%), Positives = 53/57 (92%)

Query: 1  MKAVFWSFFGVRKRKDYESDAARLNPVHVIIAGILGAVIFVAVLVSIVKLVVRSAAG 57
          MKAVFWSFFGVRKRKDYESDAARLNPVHVIIAGILGA +FVAVLV IVKLVV SA G
Sbjct: 24 MKAVFWSFFGVRKRKDYESDAARLNPVHVIIAGILGAALFVAVLVIIVKLVVGSATG 80


>ref|YP_003746882.1| hypothetical protein RCFBP_21121 [Ralstonia solanacearum
          CFBP2957]
 emb|CBJ44299.1| conserved protein of unknown function [Ralstonia solanacearum
          CFBP2957]
          Length = 70

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/52 (71%), Positives = 44/52 (84%)

Query: 1  MKAVFWSFFGVRKRKDYESDAARLNPVHVIIAGILGAVIFVAVLVSIVKLVV 52
          MKAVFWSFFGVRK  D++ D  +LNPVHVIIAGILGAV+F+ VL+ IV+ VV
Sbjct: 18 MKAVFWSFFGVRKGSDHDRDMTQLNPVHVIIAGILGAVLFIVVLLLIVRAVV 69


>ref|YP_003753655.1| hypothetical protein RPSI07_3043 [Ralstonia solanacearum PSI07]
 emb|CBJ52397.1| conserved protein of unknown function [Ralstonia solanacearum
          PSI07]
 emb|CCA80513.1| conserved hypothetical protein [blood disease bacterium R229]
          Length = 70

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/52 (71%), Positives = 45/52 (86%)

Query: 1  MKAVFWSFFGVRKRKDYESDAARLNPVHVIIAGILGAVIFVAVLVSIVKLVV 52
          MKAVFWSFFGVRK  D++ D A+LNPVHVIIAG+LGAV+F+ VL+ IV+ VV
Sbjct: 18 MKAVFWSFFGVRKGSDHDRDMAQLNPVHVIIAGVLGAVLFIVVLLLIVRAVV 69


>ref|NP_518487.1| hypothetical protein RSc0366 [Ralstonia solanacearum GMI1000]
 emb|CAD13894.1| putative transmembrane protein [Ralstonia solanacearum GMI1000]
 emb|CBJ39290.1| conserved protein of unknown function [Ralstonia solanacearum
          CMR15]
          Length = 70

 Score = 68.9 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 37/52 (71%), Positives = 45/52 (86%)

Query: 1  MKAVFWSFFGVRKRKDYESDAARLNPVHVIIAGILGAVIFVAVLVSIVKLVV 52
          MKAVFWSFFGVR+  D++ D A+LNPVHVIIAGILGAV+F+ VL+ IV+ VV
Sbjct: 18 MKAVFWSFFGVRRGSDHDRDMAQLNPVHVIIAGILGAVLFIVVLLLIVRAVV 69