BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5291.p (286 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777535.1| cytochrome c oxidase subunit III transmembra... 483 e-134 ref|ZP_08273196.1| Cytochrome c oxidase polypeptide III [Oxaloba... 413 e-113 ref|YP_004751218.1| cytochrome c oxidase polypeptide III [Collim... 406 e-111 ref|YP_001101149.1| cytochrome c oxidase polypeptide III [Hermin... 394 e-107 ref|YP_001354839.1| cytochrome c oxidase subunit III [Janthinoba... 393 e-107 >ref|YP_003777535.1| cytochrome c oxidase subunit III transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ65627.1| cytochrome c oxidase subunit III transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 286 Score = 483 bits (1244), Expect = e-134, Method: Composition-based stats. Identities = 282/286 (98%), Positives = 284/286 (99%) Query: 1 MSSQQAKAPHYFVPGPSRWPMMAGISMLITMIGASAWVNGVSWAPYVNILGILMVLVVLY 60 MSSQQAKAPHYFVPGPSRWPMMAGISMLITMIGASAWVNGVSWAPYVNILGILMVLVVLY Sbjct: 1 MSSQQAKAPHYFVPGPSRWPMMAGISMLITMIGASAWVNGVSWAPYVNILGILMVLVVLY 60 Query: 61 YWFGDAIRESESGLYSERIDLSYRWSMSWFIFSEVMFFAAFFGALFYARSITMPWLADLD 120 YWFGDAIRESESGLYSERIDLSYRWSMSWFIFSEVMFFAAFFGALFYARSITMPWLADLD Sbjct: 61 YWFGDAIRESESGLYSERIDLSYRWSMSWFIFSEVMFFAAFFGALFYARSITMPWLADLD 120 Query: 121 HKVIWPDFTGQWGNVGPAGTVENFTTMGPFPIPTINTLLLLTSGVTLTISHHAMRAGHRA 180 HK+IWPDF GQWGNVGPAGTVENFTTMGPFPIPTINTLLLLTSGVTLTISHHAMRAGHR Sbjct: 121 HKLIWPDFAGQWGNVGPAGTVENFTTMGPFPIPTINTLLLLTSGVTLTISHHAMRAGHRT 180 Query: 181 QTAVWLFLTILLGAVFMGFQAYEYIHAYSELNLKLTSGIYGSTFFMLTGFHGFHVTMGAI 240 QTAVWLFLTILLGAVFMGFQAYEYIHAYSELNLKL+SGIYGSTFFMLTGFHGFHVTMGAI Sbjct: 181 QTAVWLFLTILLGAVFMGFQAYEYIHAYSELNLKLSSGIYGSTFFMLTGFHGFHVTMGAI 240 Query: 241 MLSVVLYRVLRGHFTPTHHFAFEGAAWYWHFVDVVWLGLYVVVYWL 286 MLSVVLYRVLRGHFTPTHHFAFEGAAWYWHFVDVVWLGLYVVVYWL Sbjct: 241 MLSVVLYRVLRGHFTPTHHFAFEGAAWYWHFVDVVWLGLYVVVYWL 286 >ref|ZP_08273196.1| Cytochrome c oxidase polypeptide III [Oxalobacteraceae bacterium IMCC9480] gb|EGF33340.1| Cytochrome c oxidase polypeptide III [Oxalobacteraceae bacterium IMCC9480] Length = 286 Score = 413 bits (1062), Expect = e-113, Method: Composition-based stats. Identities = 232/286 (81%), Positives = 257/286 (89%) Query: 1 MSSQQAKAPHYFVPGPSRWPMMAGISMLITMIGASAWVNGVSWAPYVNILGILMVLVVLY 60 MS+QQA A YF+PGPS WP+MAG ++L+TM+GAS WVNG SW VN++G+L VLVVLY Sbjct: 1 MSAQQAGASSYFIPGPSAWPVMAGAALLVTMLGASGWVNGTSWGMPVNMIGLLAVLVVLY 60 Query: 61 YWFGDAIRESESGLYSERIDLSYRWSMSWFIFSEVMFFAAFFGALFYARSITMPWLADLD 120 WFGDAI ESE G YS RID+SYRWSM+WFIFSEVMFFA FFGALFYARSITMPWL+DLD Sbjct: 61 KWFGDAIAESEGGKYSARIDVSYRWSMAWFIFSEVMFFAGFFGALFYARSITMPWLSDLD 120 Query: 121 HKVIWPDFTGQWGNVGPAGTVENFTTMGPFPIPTINTLLLLTSGVTLTISHHAMRAGHRA 180 HKV+WPDF G WGN+GPAGTVE FTTMGPFPIP+INT LLLTSGVTLT+SHHA+R GHR Sbjct: 121 HKVLWPDFAGHWGNIGPAGTVETFTTMGPFPIPSINTALLLTSGVTLTLSHHAIRLGHRM 180 Query: 181 QTAVWLFLTILLGAVFMGFQAYEYIHAYSELNLKLTSGIYGSTFFMLTGFHGFHVTMGAI 240 QTA WLF TI+LGA+FMGFQ YEY+HAYSELNLKLTSGIYGSTFFMLTGFHGFHVT+GAI Sbjct: 181 QTAAWLFATIMLGAIFMGFQVYEYMHAYSELNLKLTSGIYGSTFFMLTGFHGFHVTLGAI 240 Query: 241 MLSVVLYRVLRGHFTPTHHFAFEGAAWYWHFVDVVWLGLYVVVYWL 286 MLSV+LYRVL+GHFT +HF FEGAAWYWHFVDVVWLGLYVVVYWL Sbjct: 241 MLSVILYRVLKGHFTADNHFGFEGAAWYWHFVDVVWLGLYVVVYWL 286 >ref|YP_004751218.1| cytochrome c oxidase polypeptide III [Collimonas fungivorans Ter331] gb|AEK60395.1| Cytochrome c oxidase polypeptide III [Collimonas fungivorans Ter331] Length = 288 Score = 406 bits (1043), Expect = e-111, Method: Composition-based stats. Identities = 227/286 (79%), Positives = 253/286 (88%) Query: 1 MSSQQAKAPHYFVPGPSRWPMMAGISMLITMIGASAWVNGVSWAPYVNILGILMVLVVLY 60 MSSQQ AP+YFVPGPSRWP++ G+++L TM GA+AWVN V W P + +GIL LVVLY Sbjct: 3 MSSQQGSAPYYFVPGPSRWPVLGGLALLATMAGAAAWVNSVVWGPELCAIGILSFLVVLY 62 Query: 61 YWFGDAIRESESGLYSERIDLSYRWSMSWFIFSEVMFFAAFFGALFYARSITMPWLADLD 120 WFGD+IRESE G+YS RID SYRWSMSWFIFSEVMFFAAFFGALFYARSI MPWL DLD Sbjct: 63 KWFGDSIRESEGGMYSARIDTSYRWSMSWFIFSEVMFFAAFFGALFYARSIAMPWLGDLD 122 Query: 121 HKVIWPDFTGQWGNVGPAGTVENFTTMGPFPIPTINTLLLLTSGVTLTISHHAMRAGHRA 180 +K++WPDF WGN GPAGT+E+F+TMGPFPIPTINT LLL SGVTLTISHHA+RAGHR Sbjct: 123 NKLLWPDFAAHWGNAGPAGTIESFSTMGPFPIPTINTALLLASGVTLTISHHALRAGHRG 182 Query: 181 QTAVWLFLTILLGAVFMGFQAYEYIHAYSELNLKLTSGIYGSTFFMLTGFHGFHVTMGAI 240 +TA WLF+TI LGA FMGFQA EYI AYS+ NLKLTSG+YGSTFF+LTGFHGFHVT+GAI Sbjct: 183 KTAFWLFVTIALGATFMGFQAAEYIEAYSDFNLKLTSGVYGSTFFLLTGFHGFHVTIGAI 242 Query: 241 MLSVVLYRVLRGHFTPTHHFAFEGAAWYWHFVDVVWLGLYVVVYWL 286 MLSVVL+RVL+GHFTP HHFAFEGAAWYWHFVDVVWLGLYVVVYWL Sbjct: 243 MLSVVLFRVLKGHFTPEHHFAFEGAAWYWHFVDVVWLGLYVVVYWL 288 >ref|YP_001101149.1| cytochrome c oxidase polypeptide III [Herminiimonas arsenicoxydans] emb|CAL63028.1| Cytochrome c oxidase polypeptide III [Herminiimonas arsenicoxydans] Length = 288 Score = 394 bits (1011), Expect = e-107, Method: Composition-based stats. Identities = 223/286 (77%), Positives = 249/286 (87%) Query: 1 MSSQQAKAPHYFVPGPSRWPMMAGISMLITMIGASAWVNGVSWAPYVNILGILMVLVVLY 60 MS+Q A AP+YFVPGPSRWP AG+S+L M+GASAWVN SW Y+ G+L L VLY Sbjct: 3 MSAQHANAPYYFVPGPSRWPAAAGMSLLTLMLGASAWVNDASWGSYLTWAGLLGFLFVLY 62 Query: 61 YWFGDAIRESESGLYSERIDLSYRWSMSWFIFSEVMFFAAFFGALFYARSITMPWLADLD 120 WFGDAI ESESG+Y++RID SYRWSMSWFIFSE+MFF AFFGALFYARSI+MPWL DLD Sbjct: 63 KWFGDAIGESESGMYNKRIDASYRWSMSWFIFSEIMFFGAFFGALFYARSISMPWLGDLD 122 Query: 121 HKVIWPDFTGQWGNVGPAGTVENFTTMGPFPIPTINTLLLLTSGVTLTISHHAMRAGHRA 180 HK++WPDF WGNVGPAGTVE FTTMGPF IPTINT LLLTSGVTLT+SHHA+R R Sbjct: 123 HKILWPDFAAHWGNVGPAGTVEAFTTMGPFWIPTINTALLLTSGVTLTLSHHALRENQRG 182 Query: 181 QTAVWLFLTILLGAVFMGFQAYEYIHAYSELNLKLTSGIYGSTFFMLTGFHGFHVTMGAI 240 +TA WL T+LLGAVFMGFQ YEY+HAYS+LNLKLTSG+YGSTFF+LTGFHGFHVT+GAI Sbjct: 183 KTAFWLAATVLLGAVFMGFQVYEYMHAYSDLNLKLTSGVYGSTFFLLTGFHGFHVTLGAI 242 Query: 241 MLSVVLYRVLRGHFTPTHHFAFEGAAWYWHFVDVVWLGLYVVVYWL 286 MLSVVLYRV++GHFT +HFAFEGAAWYWHFVDVVWLGLYVVVYWL Sbjct: 243 MLSVVLYRVMKGHFTADNHFAFEGAAWYWHFVDVVWLGLYVVVYWL 288 >ref|YP_001354839.1| cytochrome c oxidase subunit III [Janthinobacterium sp. Marseille] gb|ABR88588.1| cytochrome c oxidase subunit III [Janthinobacterium sp. Marseille] Length = 286 Score = 393 bits (1010), Expect = e-107, Method: Composition-based stats. Identities = 226/286 (79%), Positives = 248/286 (86%) Query: 1 MSSQQAKAPHYFVPGPSRWPMMAGISMLITMIGASAWVNGVSWAPYVNILGILMVLVVLY 60 MS+Q A AP+YFVPGPS+WP +AG S+L+ M+GAS WVN W Y G+L LVVLY Sbjct: 1 MSAQHANAPYYFVPGPSKWPAIAGTSLLVMMLGASGWVNDAGWGAYATFAGLLGFLVVLY 60 Query: 61 YWFGDAIRESESGLYSERIDLSYRWSMSWFIFSEVMFFAAFFGALFYARSITMPWLADLD 120 YWFGDAI ESE GLY++RID SYRWSMSWFIFSEVMFFAAFFGALFYARSI MPWL DLD Sbjct: 61 YWFGDAIAESEGGLYNKRIDASYRWSMSWFIFSEVMFFAAFFGALFYARSIAMPWLGDLD 120 Query: 121 HKVIWPDFTGQWGNVGPAGTVENFTTMGPFPIPTINTLLLLTSGVTLTISHHAMRAGHRA 180 +K++WPDF WGNVGPAGTVE FTTMGPF IPTINT LLL SGVTLTISHHA+R HR Sbjct: 121 NKILWPDFAAHWGNVGPAGTVEPFTTMGPFWIPTINTALLLLSGVTLTISHHAIRENHRG 180 Query: 181 QTAVWLFLTILLGAVFMGFQAYEYIHAYSELNLKLTSGIYGSTFFMLTGFHGFHVTMGAI 240 +TA WL TILLGA+FMGFQ YEY+HAYSELNLKLTSG+YGSTFF+LTGFHGFHVT+GAI Sbjct: 181 KTAFWLAATILLGAIFMGFQVYEYMHAYSELNLKLTSGVYGSTFFLLTGFHGFHVTLGAI 240 Query: 241 MLSVVLYRVLRGHFTPTHHFAFEGAAWYWHFVDVVWLGLYVVVYWL 286 MLSVVLYRVL+GHFT +HFAFEGAAWYWHFVDVVWLGLYVVVYWL Sbjct: 241 MLSVVLYRVLKGHFTADNHFAFEGAAWYWHFVDVVWLGLYVVVYWL 286