BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.5290.p         (66 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003777534.1| transmembrane protein [Herbaspirillum serope...    92   3e-17
ref|YP_001101148.1| putative transmembrane protein [Herminiimona...    82   2e-14
ref|ZP_08273197.1| putative transmembrane protein [Oxalobacterac...    81   6e-14
ref|YP_004751219.1| putative transmembrane protein [Collimonas f...    80   8e-14
ref|YP_001354838.1| hypothetical protein mma_3148 [Janthinobacte...    79   2e-13

>ref|YP_003777534.1| transmembrane protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ65626.1| transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 66

 Score = 92.0 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 65/66 (98%), Positives = 66/66 (100%)

Query: 1  MKIIVAIAFILILASLASALIFLMRDKGKSNRTVQALTLRVGFSVALFLFILLSYKLGWI 60
          MKI+VAIAFILILASLASALIFLMRDKGKSNRTVQALTLRVGFSVALFLFILLSYKLGWI
Sbjct: 1  MKIVVAIAFILILASLASALIFLMRDKGKSNRTVQALTLRVGFSVALFLFILLSYKLGWI 60

Query: 61 QPTGIR 66
          QPTGIR
Sbjct: 61 QPTGIR 66


>ref|YP_001101148.1| putative transmembrane protein [Herminiimonas arsenicoxydans]
 emb|CAL63027.1| Conserved hypothetical protein; putative membrane protein
          [Herminiimonas arsenicoxydans]
          Length = 74

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 49/66 (74%), Positives = 60/66 (90%)

Query: 1  MKIIVAIAFILILASLASALIFLMRDKGKSNRTVQALTLRVGFSVALFLFILLSYKLGWI 60
          MKI+VAIAFILIL SL SAL FLM+DKGKS+RTV+AL +RVGFS+ LF+ +L++YKLG+I
Sbjct: 9  MKIVVAIAFILILGSLGSALFFLMKDKGKSDRTVKALAMRVGFSITLFILVLVAYKLGYI 68

Query: 61 QPTGIR 66
          QPTGIR
Sbjct: 69 QPTGIR 74


>ref|ZP_08273197.1| putative transmembrane protein [Oxalobacteraceae bacterium
          IMCC9480]
 gb|EGF33341.1| putative transmembrane protein [Oxalobacteraceae bacterium
          IMCC9480]
          Length = 69

 Score = 80.9 bits (198), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 45/65 (69%), Positives = 58/65 (89%)

Query: 1  MKIIVAIAFILILASLASALIFLMRDKGKSNRTVQALTLRVGFSVALFLFILLSYKLGWI 60
          MKI++AI FILI+ SL SA +FLM+DKGK+NRTV AL +RVGFS+A+F+ +L+SYK+GWI
Sbjct: 4  MKILIAIGFILIIGSLGSAFVFLMKDKGKTNRTVYALAMRVGFSIAMFVMLLVSYKMGWI 63

Query: 61 QPTGI 65
          QPTGI
Sbjct: 64 QPTGI 68


>ref|YP_004751219.1| putative transmembrane protein [Collimonas fungivorans Ter331]
 gb|AEK60396.1| putative transmembrane protein [Collimonas fungivorans Ter331]
          Length = 66

 Score = 80.5 bits (197), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 53/65 (81%), Positives = 62/65 (95%)

Query: 1  MKIIVAIAFILILASLASALIFLMRDKGKSNRTVQALTLRVGFSVALFLFILLSYKLGWI 60
          MKI+VAIAFILI+ SLASAL+FLMRDKGKSNRTVQALT+RVGFSVALF+ +L+ YKLG+I
Sbjct: 1  MKIVVAIAFILIIGSLASALVFLMRDKGKSNRTVQALTMRVGFSVALFILLLVLYKLGYI 60

Query: 61 QPTGI 65
          QPTG+
Sbjct: 61 QPTGL 65


>ref|YP_001354838.1| hypothetical protein mma_3148 [Janthinobacterium sp. Marseille]
 gb|ABR91798.1| Uncharacterized conserved protein [Janthinobacterium sp.
          Marseille]
          Length = 66

 Score = 79.3 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 54/66 (81%), Positives = 60/66 (90%)

Query: 1  MKIIVAIAFILILASLASALIFLMRDKGKSNRTVQALTLRVGFSVALFLFILLSYKLGWI 60
          MKIIVAIAFILIL SL SAL FLM+DKGKSNRTV+ALT+RVGFSVALF+ +LL+YK G I
Sbjct: 1  MKIIVAIAFILILGSLGSALFFLMKDKGKSNRTVKALTMRVGFSVALFILVLLAYKFGLI 60

Query: 61 QPTGIR 66
          QPTGIR
Sbjct: 61 QPTGIR 66