BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5289.p (238 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777533.1| transmembrane cytochrome oxidase complex bio... 353 1e-95 ref|YP_001354837.1| hypothetical protein mma_3147 [Janthinobacte... 253 2e-65 ref|YP_004751220.1| cytochrome oxidase biogenesis protein Surf1,... 227 1e-57 ref|YP_001101147.1| SURF1-like protein [Herminiimonas arsenicoxy... 220 2e-55 ref|ZP_08273198.1| Cytochrome oxidase biogenesis protein Surf1, ... 213 2e-53 >ref|YP_003777533.1| transmembrane cytochrome oxidase complex biogenesis factor transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ65625.1| transmembrane cytochrome oxidase complex biogenesis factor transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 240 Score = 353 bits (906), Expect = 1e-95, Method: Composition-based stats. Identities = 186/239 (77%), Positives = 206/239 (86%), Gaps = 2/239 (0%) Query: 1 MPTRFVFRLIPFCATLVVAAAGIALGQWQTHRAEEKLALQQRMQARGSEAPLSALPVD-- 58 MPTRF FR+IPFCA L+VAAAGIALGQWQTHRA+EK ALQ RMQAR +EAPLSALP D Sbjct: 1 MPTRFRFRIIPFCAMLIVAAAGIALGQWQTHRAQEKQALQARMQARAAEAPLSALPPDDQ 60 Query: 59 ASDAEFRQIRLRGHYLPQWTLYLENRPYNGAVGFHVLTLFQPEGSGPAVVVARGWAPRDA 118 + EFRQ+ LRG ++PQWTLYLENRP+ GAVGFHVLTLF+PEGS AVVVARGWAPRDA Sbjct: 61 SLQDEFRQVSLRGQFIPQWTLYLENRPHQGAVGFHVLTLFKPEGSAQAVVVARGWAPRDA 120 Query: 119 ADRTRVPQVPPPSGVTEVEGILRRDAGHVLQLGTADAPRPQAILQNLDVPALAKASGVTL 178 DRTRVPQ PP G TEV+G+LRRDAGHVLQLG ADAPRP AILQNLD+ ALA+ASG+ L Sbjct: 121 VDRTRVPQSPPAQGTTEVQGLLRRDAGHVLQLGQADAPRPGAILQNLDLAALAQASGMPL 180 Query: 179 APLVIEQSGAAGDTLVRDWPAPSLGIDRHRGYAVQWYALAGMALLFFIVTGFKRGRHDK 237 + VIEQ G D L+RDWPAPSLGIDRHRGYAVQWYALA MA+LFFIVTGF+RGR+DK Sbjct: 181 SGFVIEQGGDVSDGLLRDWPAPSLGIDRHRGYAVQWYALAAMAVLFFIVTGFRRGRNDK 239 >ref|YP_001354837.1| hypothetical protein mma_3147 [Janthinobacterium sp. Marseille] gb|ABR90221.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 237 Score = 253 bits (646), Expect = 2e-65, Method: Composition-based stats. Identities = 123/235 (52%), Positives = 167/235 (71%), Gaps = 2/235 (0%) Query: 1 MPTRFVFRLIPFCATLVVAAAGIALGQWQTHRAEEKLALQQRMQARGSEAPL--SALPVD 58 M F FRLIPF A + A G++LGQWQT RA EK+A++Q++ R + A L S ++ Sbjct: 1 MRFTFRFRLIPFVAAAIAVAIGLSLGQWQTRRAAEKIAIEQKIHERQAAASLQLSDSALN 60 Query: 59 ASDAEFRQIRLRGHYLPQWTLYLENRPYNGAVGFHVLTLFQPEGSGPAVVVARGWAPRDA 118 D EFR++ ++G +L W +YL+NRP+NG GF++L F+ GS ++VARGW PR+ Sbjct: 61 PDDIEFRRLSVKGEFLQDWPVYLDNRPHNGVAGFYLLMPFKVAGSQLHILVARGWIPRNV 120 Query: 119 ADRTRVPQVPPPSGVTEVEGILRRDAGHVLQLGTADAPRPQAILQNLDVPALAKASGVTL 178 ADRT++P + P+G ++EG+ RRD GHV+QLG DAPRP AI+QNLDV A ASG+ + Sbjct: 121 ADRTKMPAIVTPNGQLQIEGVARRDIGHVMQLGEVDAPRPHAIVQNLDVAGFAAASGLQM 180 Query: 179 APLVIEQSGAAGDTLVRDWPAPSLGIDRHRGYAVQWYALAGMALLFFIVTGFKRG 233 +P+V+EQ GD LVRDWP PS G+D+HRGYA QWY LA MA +FF+VTG +RG Sbjct: 181 SPIVLEQLTDTGDGLVRDWPVPSSGVDKHRGYAFQWYGLAAMAFIFFVVTGIRRG 235 >ref|YP_004751220.1| cytochrome oxidase biogenesis protein Surf1, facilitates heme A insertion [Collimonas fungivorans Ter331] gb|AEK60397.1| Cytochrome oxidase biogenesis protein Surf1, facilitates heme A insertion [Collimonas fungivorans Ter331] Length = 239 Score = 227 bits (579), Expect = 1e-57, Method: Composition-based stats. Identities = 120/227 (52%), Positives = 156/227 (68%), Gaps = 8/227 (3%) Query: 15 TLVVAAAGIALGQWQTHRAEEKLALQQRMQARGSEAPL---SALPV-DASDAEFRQIRLR 70 T+++ GIAL QWQT R ++K A++ R+ R ++A + +AL V D EFR++ LR Sbjct: 2 TVLLVVLGIALAQWQTRRGDQKQAIESRLLRREADATVRLGAALQVQDVDQLEFRRMALR 61 Query: 71 GHYLPQWTLYLENRPYNGAVGFHVLTLFQPEGSGPAV----VVARGWAPRDAADRTRVPQ 126 G ++ W +YL+NRP NG GF+VL F+ S V +VARGW PRD ADR+++P Sbjct: 62 GEFIAGWPVYLDNRPLNGVAGFYVLMPFKLAASDTGVANYILVARGWLPRDPADRSKLPS 121 Query: 127 VPPPSGVTEVEGILRRDAGHVLQLGTADAPRPQAILQNLDVPALAKASGVTLAPLVIEQS 186 P P+G E+EG++RRD GHVLQLG A RPQAI+QNL V A AS L P VIEQ+ Sbjct: 122 YPTPAGTVEIEGLVRRDFGHVLQLGDAAPLRPQAIVQNLAVSEFATASKFKLQPFVIEQT 181 Query: 187 GAAGDTLVRDWPAPSLGIDRHRGYAVQWYALAGMALLFFIVTGFKRG 233 D L+RDWP PSLGI++HRGYA QWYALA MAL+FF+VTGF+RG Sbjct: 182 SNTEDHLLRDWPRPSLGIEKHRGYAFQWYALAAMALIFFVVTGFRRG 228 >ref|YP_001101147.1| SURF1-like protein [Herminiimonas arsenicoxydans] emb|CAL63026.1| Conserved hypothetical protein; putative cytochrome c biogenesis [Herminiimonas arsenicoxydans] Length = 237 Score = 220 bits (560), Expect = 2e-55, Method: Composition-based stats. Identities = 114/236 (48%), Positives = 154/236 (65%), Gaps = 4/236 (1%) Query: 1 MPTRFVFRLIPFCATLVVAAAGIALGQWQTHRAEEKLALQQRMQARGSEAP---LSALPV 57 M F FRLIPF A + A G++L QWQT RA EKL + ++Q R + AP L AL Sbjct: 1 MRITFRFRLIPFVAAAIAVAIGLSLAQWQTRRAVEKLTIAAQLQERQA-APAIRLGALLQ 59 Query: 58 DASDAEFRQIRLRGHYLPQWTLYLENRPYNGAVGFHVLTLFQPEGSGPAVVVARGWAPRD 117 D E+R++ ++G +L W +YL+NRP+NG GF++L F+ S V+VARGW PR+ Sbjct: 60 SPEDLEYRRVLVKGEFLRDWPVYLDNRPHNGVAGFYLLMPFKIAASNLHVLVARGWIPRN 119 Query: 118 AADRTRVPQVPPPSGVTEVEGILRRDAGHVLQLGTADAPRPQAILQNLDVPALAKASGVT 177 ADRT++P + P G E+EG R G V+QLG DAP+ AI+QNLD+ + A S + Sbjct: 120 PADRTKLPAIVTPEGEIEIEGTAHRSIGSVMQLGALDAPQAHAIVQNLDITSFAATSKLA 179 Query: 178 LAPLVIEQSGAAGDTLVRDWPAPSLGIDRHRGYAVQWYALAGMALLFFIVTGFKRG 233 + P+ +EQ D LVRDWP PS G+++HRGYA QWYALA MA +FF+VTG +RG Sbjct: 180 MQPIFLEQLSDTHDGLVRDWPQPSSGVEKHRGYAFQWYALAAMAFIFFVVTGIRRG 235 >ref|ZP_08273198.1| Cytochrome oxidase biogenesis protein Surf1, facilitates heme A insertion [Oxalobacteraceae bacterium IMCC9480] gb|EGF33342.1| Cytochrome oxidase biogenesis protein Surf1, facilitates heme A insertion [Oxalobacteraceae bacterium IMCC9480] Length = 240 Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats. Identities = 117/238 (49%), Positives = 158/238 (66%), Gaps = 7/238 (2%) Query: 1 MPTRFVFRLIPFCATLVVAAAGIALGQWQTHRAEEKLALQQRMQARGSEAPLSAL---PV 57 M RF FRLIPF A ++ GI+L QWQT RA EK ++ ++ AR S AP+ AL PV Sbjct: 1 MRIRFQFRLIPFIAAALLVLLGISLAQWQTRRAAEKQQIEAQLTARAS-APVMALGATPV 59 Query: 58 DASDAEFRQIRLRGHYLPQWTLYLENRPYNGAVGFHVLTLFQPEGSGPAVVVARGWAPRD 117 A E+R++ +RG ++ W +YL+NRP +G G +V+ F+ GS V+V RGW + Sbjct: 60 QADALEYRRVSVRGEFVSDWPVYLDNRPQDGRPGLYVVMPFRIAGSTNHVLVERGWIALN 119 Query: 118 AADRTRVPQVPPPSGVTEVEGILRRDAGHVLQLGTADAPRPQAILQNLDVPALAKASGVT 177 A+R + P+G E+ G +RR AG V+QLG A +P A+LQNL++ ++ASG+ Sbjct: 120 TANRATMLPYQTPAGEIEISGTVRRHAGRVMQLGNAAELKPGALLQNLEIVDFSRASGMA 179 Query: 178 LAPLVIEQS---GAAGDTLVRDWPAPSLGIDRHRGYAVQWYALAGMALLFFIVTGFKR 232 + P++IEQ+ GAA D LVRDWP PS GID HRGYA QWYALAGMA LFF+VTGF+R Sbjct: 180 MQPVLIEQATTPGAAADGLVRDWPTPSSGIDMHRGYAFQWYALAGMAFLFFVVTGFRR 237