BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5284.p (299 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777528.1| RNA polymerase sigma-32 factor protein [Herb... 546 e-153 ref|YP_004751227.1| RNA polymerase sigma factor [Collimonas fung... 500 e-139 ref|YP_001354832.1| RNA polymerase sigma-32 factor [Janthinobact... 487 e-135 ref|ZP_08275256.1| RNA polymerase sigma factor RpoH [Oxalobacter... 486 e-135 ref|YP_001101142.1| sigma H factor [Herminiimonas arsenicoxydans... 485 e-135 >ref|YP_003777528.1| RNA polymerase sigma-32 factor protein [Herbaspirillum seropedicae SmR1] gb|ADJ65620.1| RNA polymerase sigma-32 factor protein [Herbaspirillum seropedicae SmR1] Length = 299 Score = 546 bits (1406), Expect = e-153, Method: Composition-based stats. Identities = 296/299 (98%), Positives = 298/299 (99%) Query: 1 MKTASAHTALMPAESNALALGFSGSLGNIDAYISAVNRLPMLTHEEEIKLARDLREKNDL 60 MKTASA TALMPAESNALALGFSGSLGNIDAYISAVNRLPMLTHEEE+KLARDLREKNDL Sbjct: 1 MKTASAQTALMPAESNALALGFSGSLGNIDAYISAVNRLPMLTHEEEVKLARDLREKNDL 60 Query: 61 GAAQKMVLSHLRLVVSIARGYLGYGLPHADLIQEGNIGLMKAVKRFDPAQNVRLVSYAMH 120 GAAQKMVLSHLRLVVSIARGYLGYGLPHADLIQEGNIGLMKAVKRFDPAQNVRLVSYAMH Sbjct: 61 GAAQKMVLSHLRLVVSIARGYLGYGLPHADLIQEGNIGLMKAVKRFDPAQNVRLVSYAMH 120 Query: 121 WIKAEIHEYILKNWRLVKVATTKAQRKLFFNLRSHKEGLDAMTPAQVEALAKTLDVKREE 180 WIKAEIHEYILKNWRLVKVATTKAQRKLFFNLRSHKEGLDAMTPAQVEALAKTLDVKREE Sbjct: 121 WIKAEIHEYILKNWRLVKVATTKAQRKLFFNLRSHKEGLDAMTPAQVEALAKTLDVKREE 180 Query: 181 VIEMETRLSGRDIALESPTDDEDDKFAPIAYLSSDNSEPTRVIEAKQYDRLQSEGLEAAL 240 VIEMETRLSGRDIALESPTDDEDDKFAPIAYLSSDNSEPTRVIEAKQYDRLQSEGLEAAL Sbjct: 181 VIEMETRLSGRDIALESPTDDEDDKFAPIAYLSSDNSEPTRVIEAKQYDRLQSEGLEAAL 240 Query: 241 SKLDDRSRRIVEARWLANDDGSGATLHELADEFGVSAERIRQIEAVALKKMKTSLQAYS 299 SKLD+RSRRIVEARWLANDDGSGATLHELADEFGVSAERIRQIEAVALKKMKTSLQAYS Sbjct: 241 SKLDERSRRIVEARWLANDDGSGATLHELADEFGVSAERIRQIEAVALKKMKTSLQAYS 299 >ref|YP_004751227.1| RNA polymerase sigma factor [Collimonas fungivorans Ter331] gb|AEK60404.1| RNA polymerase sigma factor [Collimonas fungivorans Ter331] Length = 299 Score = 500 bits (1288), Expect = e-139, Method: Composition-based stats. Identities = 260/299 (86%), Positives = 287/299 (95%) Query: 1 MKTASAHTALMPAESNALALGFSGSLGNIDAYISAVNRLPMLTHEEEIKLARDLREKNDL 60 MK S +TALMP +++ALALGFSG+LGNIDAYISAVNRLPMLTH+EEI LA+ LR+KNDL Sbjct: 1 MKNPSVNTALMPTDTSALALGFSGTLGNIDAYISAVNRLPMLTHDEEITLAQQLRDKNDL 60 Query: 61 GAAQKMVLSHLRLVVSIARGYLGYGLPHADLIQEGNIGLMKAVKRFDPAQNVRLVSYAMH 120 GAAQK+VLSHLRLVVSIARGYLGYGLPHADLIQEGNIGLMKAVKRFDP Q VRLVSYAMH Sbjct: 61 GAAQKLVLSHLRLVVSIARGYLGYGLPHADLIQEGNIGLMKAVKRFDPDQGVRLVSYAMH 120 Query: 121 WIKAEIHEYILKNWRLVKVATTKAQRKLFFNLRSHKEGLDAMTPAQVEALAKTLDVKREE 180 WIKAE+HEYILKNWRLVKVATTKAQRKLFFNLRSHKEGLDAMTPAQV+ALAKTL+VKREE Sbjct: 121 WIKAEMHEYILKNWRLVKVATTKAQRKLFFNLRSHKEGLDAMTPAQVDALAKTLNVKREE 180 Query: 181 VIEMETRLSGRDIALESPTDDEDDKFAPIAYLSSDNSEPTRVIEAKQYDRLQSEGLEAAL 240 VIEMETRL+GRDIALE+PTDD+DDKFAPIAYLS++ EP++V+EA++YDR+QSEGLE+AL Sbjct: 181 VIEMETRLTGRDIALEAPTDDDDDKFAPIAYLSTEAQEPSKVLEAQRYDRMQSEGLESAL 240 Query: 241 SKLDDRSRRIVEARWLANDDGSGATLHELADEFGVSAERIRQIEAVALKKMKTSLQAYS 299 SKLDDRSRRIVEARWLANDDGSG+TLHELADEFGVSAERIRQIEAVALKKMK SL A++ Sbjct: 241 SKLDDRSRRIVEARWLANDDGSGSTLHELADEFGVSAERIRQIEAVALKKMKGSLAAFA 299 >ref|YP_001354832.1| RNA polymerase sigma-32 factor [Janthinobacterium sp. Marseille] gb|ABR89246.1| RNA polymerase sigma-32 factor [Janthinobacterium sp. Marseille] Length = 298 Score = 487 bits (1253), Expect = e-135, Method: Composition-based stats. Identities = 259/299 (86%), Positives = 278/299 (92%), Gaps = 1/299 (0%) Query: 1 MKTASAHTALMPAESNALALGFSGSLGNIDAYISAVNRLPMLTHEEEIKLARDLREKNDL 60 MK SA TAL+P SN LALGFSG+LGNIDAYISAVNRLPMLTHEEE+ LAR LR++NDL Sbjct: 1 MKAVSASTALVP-NSNMLALGFSGALGNIDAYISAVNRLPMLTHEEEMSLARRLRDENDL 59 Query: 61 GAAQKMVLSHLRLVVSIARGYLGYGLPHADLIQEGNIGLMKAVKRFDPAQNVRLVSYAMH 120 GAAQK+VLSHLRLVVSIARGYLGYGLPHADLIQEGNIGLMKAVKRFDP Q VRLVSY+MH Sbjct: 60 GAAQKLVLSHLRLVVSIARGYLGYGLPHADLIQEGNIGLMKAVKRFDPDQGVRLVSYSMH 119 Query: 121 WIKAEIHEYILKNWRLVKVATTKAQRKLFFNLRSHKEGLDAMTPAQVEALAKTLDVKREE 180 WIKAE+HEYILKNWRLVKVATTKAQRKLFFNLRSHK GLD+MTP QV+ LAKTL+VKREE Sbjct: 120 WIKAEMHEYILKNWRLVKVATTKAQRKLFFNLRSHKTGLDSMTPDQVDELAKTLNVKREE 179 Query: 181 VIEMETRLSGRDIALESPTDDEDDKFAPIAYLSSDNSEPTRVIEAKQYDRLQSEGLEAAL 240 VIEMETRLSGRDIALE+PTDDEDDKFAPIAYLSSD EPT+V+E++Q+DRLQ+EGL AL Sbjct: 180 VIEMETRLSGRDIALEAPTDDEDDKFAPIAYLSSDMQEPTKVLESQQFDRLQTEGLSNAL 239 Query: 241 SKLDDRSRRIVEARWLANDDGSGATLHELADEFGVSAERIRQIEAVALKKMKTSLQAYS 299 KLD RSRRIVEARWLANDDGSGATLHELADEFGVSAERIRQIEAVALKKMK SL AY+ Sbjct: 240 GKLDARSRRIVEARWLANDDGSGATLHELADEFGVSAERIRQIEAVALKKMKGSLAAYA 298 >ref|ZP_08275256.1| RNA polymerase sigma factor RpoH [Oxalobacteraceae bacterium IMCC9480] gb|EGF31276.1| RNA polymerase sigma factor RpoH [Oxalobacteraceae bacterium IMCC9480] Length = 298 Score = 486 bits (1251), Expect = e-135, Method: Composition-based stats. Identities = 258/299 (86%), Positives = 278/299 (92%), Gaps = 1/299 (0%) Query: 1 MKTASAHTALMPAESNALALGFSGSLGNIDAYISAVNRLPMLTHEEEIKLARDLREKNDL 60 MKT TA + A NALALGF+G+LGNID+YISAVNRLPMLTHEEE+ LAR LR++NDL Sbjct: 1 MKTTVPETASV-APGNALALGFTGTLGNIDSYISAVNRLPMLTHEEEMSLARRLRDQNDL 59 Query: 61 GAAQKMVLSHLRLVVSIARGYLGYGLPHADLIQEGNIGLMKAVKRFDPAQNVRLVSYAMH 120 GAAQ MVLSHLRLVVSIARGYLGYGLPHADLIQEGNIGLMKAVKRFDP Q VRLVSYAMH Sbjct: 60 GAAQGMVLSHLRLVVSIARGYLGYGLPHADLIQEGNIGLMKAVKRFDPDQGVRLVSYAMH 119 Query: 121 WIKAEIHEYILKNWRLVKVATTKAQRKLFFNLRSHKEGLDAMTPAQVEALAKTLDVKREE 180 WIKAE+HEYILKNWRLVKVATTKAQRKLFFNLRSHK GLD+MTPAQVEALA+TL+VKREE Sbjct: 120 WIKAEMHEYILKNWRLVKVATTKAQRKLFFNLRSHKTGLDSMTPAQVEALAQTLNVKREE 179 Query: 181 VIEMETRLSGRDIALESPTDDEDDKFAPIAYLSSDNSEPTRVIEAKQYDRLQSEGLEAAL 240 VIEMETRLSGRDIALE+PTDDEDDKFAPIAYLSSD +EPT V+EA+QYDRLQS+GL AL Sbjct: 180 VIEMETRLSGRDIALEAPTDDEDDKFAPIAYLSSDRNEPTNVLEAQQYDRLQSDGLSQAL 239 Query: 241 SKLDDRSRRIVEARWLANDDGSGATLHELADEFGVSAERIRQIEAVALKKMKTSLQAYS 299 +KLD+RSRRIVEARWLANDDGSGATLHELA EFGVSAERIRQIEAVALKKMK SL A++ Sbjct: 240 NKLDERSRRIVEARWLANDDGSGATLHELAKEFGVSAERIRQIEAVALKKMKGSLAAFA 298 >ref|YP_001101142.1| sigma H factor [Herminiimonas arsenicoxydans] emb|CAL63021.1| RNA polymerase sigma-32 factor [Herminiimonas arsenicoxydans] Length = 298 Score = 485 bits (1249), Expect = e-135, Method: Composition-based stats. Identities = 256/299 (85%), Positives = 279/299 (93%), Gaps = 1/299 (0%) Query: 1 MKTASAHTALMPAESNALALGFSGSLGNIDAYISAVNRLPMLTHEEEIKLARDLREKNDL 60 MK SA TA++ + SN ++LGFSG+LGNIDAYISAVNRLPMLTHEEEI LA+ LR+ NDL Sbjct: 1 MKATSASTAMI-SPSNMMSLGFSGALGNIDAYISAVNRLPMLTHEEEISLAKRLRDDNDL 59 Query: 61 GAAQKMVLSHLRLVVSIARGYLGYGLPHADLIQEGNIGLMKAVKRFDPAQNVRLVSYAMH 120 GAAQK+VLSHLRLVVSIARGYLGYGLPHADLIQEGNIGLMKAVKRFDP Q VRLVSY+MH Sbjct: 60 GAAQKLVLSHLRLVVSIARGYLGYGLPHADLIQEGNIGLMKAVKRFDPDQGVRLVSYSMH 119 Query: 121 WIKAEIHEYILKNWRLVKVATTKAQRKLFFNLRSHKEGLDAMTPAQVEALAKTLDVKREE 180 WIKAE+HEYILKNWRLVKVATTKAQRKLFFNLRSHK GLDAMTP QVEALAKTL+VKREE Sbjct: 120 WIKAEMHEYILKNWRLVKVATTKAQRKLFFNLRSHKTGLDAMTPDQVEALAKTLNVKREE 179 Query: 181 VIEMETRLSGRDIALESPTDDEDDKFAPIAYLSSDNSEPTRVIEAKQYDRLQSEGLEAAL 240 VIEMETRLSGRDIALE+PTDDEDDKFAPIAYLSSD+ EPTRV+E+++YDRLQ+EGL +AL Sbjct: 180 VIEMETRLSGRDIALEAPTDDEDDKFAPIAYLSSDSQEPTRVLESQRYDRLQTEGLSSAL 239 Query: 241 SKLDDRSRRIVEARWLANDDGSGATLHELADEFGVSAERIRQIEAVALKKMKTSLQAYS 299 KLD RSRRIVEARWLANDDGSGATLHELA+EFGVSAERIRQIE VALKKMK SL A++ Sbjct: 240 GKLDPRSRRIVEARWLANDDGSGATLHELANEFGVSAERIRQIETVALKKMKGSLAAFA 298