BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5283.p (408 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777527.1| hypothetical protein Hsero_4149 [Herbaspiril... 409 e-112 gb|EFW84424.1| hypothetical protein PsgRace4_18138 [Pseudomonas ... 285 7e-75 ref|ZP_06064801.1| predicted protein [Acinetobacter johnsonii SH... 105 2e-20 ref|YP_004232501.1| Abi family protein [Acidovorax avenae subsp.... 86 2e-14 ref|ZP_04616730.1| hypothetical protein yruck0001_8050 [Yersinia... 83 9e-14 >ref|YP_003777527.1| hypothetical protein Hsero_4149 [Herbaspirillum seropedicae SmR1] gb|ADJ65619.1| hypothetical protein Hsero_4149 [Herbaspirillum seropedicae SmR1] Length = 313 Score = 409 bits (1052), Expect = e-112, Method: Composition-based stats. Identities = 199/313 (63%), Positives = 238/313 (76%) Query: 96 MLKHLTAPRLSTLRQFFLTTSYQDTLGCYAWNQAVAAGLLPLLGDVEVSLRNALHGALSR 155 M KH + PRL+ L FF+TTS++D LGCYAWNQAV+AG LPLL DVEVSLRNALH ALS+ Sbjct: 1 MQKHFSTPRLAALDSFFVTTSHRDALGCYAWNQAVSAGFLPLLADVEVSLRNALHRALSQ 60 Query: 156 HYGAAESFGWMMPRPNPAHAINPAAPAVLPPLHKLSPKSRADVICAMEKVMGRKPSSYIV 215 ++ A +S WMMPRPNPAH INPAAP LPP+HKL+PK+R DV+ AM K+ RKP+ Y+V Sbjct: 61 YFHAVDSSDWMMPRPNPAHGINPAAPVQLPPVHKLTPKAREDVVSAMGKIKARKPAGYLV 120 Query: 216 TPDDVVAALPFGFWEVLISGLAHRAQPAGLQAAILAEVFPHAPDIALFAHDSPEFRKRVV 275 +PDDVVAALPFGFWEVLI+GLAHR+QP GLQAAILA FP+A D A + S +FR R+V Sbjct: 121 SPDDVVAALPFGFWEVLIAGLAHRSQPPGLQAAILAAAFPYAADTATTPYGSQDFRMRLV 180 Query: 276 TLLKRIRDVRNRIGHHDALWNLPEFDRLGVLGFIPRRPRHTVNSLRRLVDHLSWFAGWID 335 LLKRIRD+RNRIGHH+ALW+ PEF+ GVLG IPRRPRHTVNSLR+ + LSWF GWID Sbjct: 181 KLLKRIRDIRNRIGHHEALWSTPEFNVFGVLGHIPRRPRHTVNSLRKFAEKLSWFGGWID 240 Query: 336 PVISLHLRQSDHWWSLQVLLDRHALAIYRRTGGRAGSYRLVLAQARVPCEPLVKRRRGSR 395 P IS +++ +DHWWSLQVLL R ALA YR GG G+YR +L R P + R Sbjct: 241 PGISAYMQNNDHWWSLQVLLQRQALATYRVLGGAVGTYRRLLEATRTPANGTMPTLRTRH 300 Query: 396 QSVASPFWDRYFF 408 + DRY+F Sbjct: 301 KRHKRRIVDRYYF 313 >gb|EFW84424.1| hypothetical protein PsgRace4_18138 [Pseudomonas syringae pv. glycinea str. race 4] gb|EGH19874.1| hypothetical protein Pgy4_43842 [Pseudomonas syringae pv. glycinea str. race 4] Length = 316 Score = 285 bits (730), Expect = 7e-75, Method: Composition-based stats. Identities = 148/294 (50%), Positives = 191/294 (64%), Gaps = 14/294 (4%) Query: 96 MLKHLTAPRLSTLRQFFLTTSYQDTLGCYAWNQAVAAGLLPLLGDVEVSLRNALHGALSR 155 M HL++ RL+T+ FF + D +GCY+W QAV A LLP+LGD EVSLRNALH LS+ Sbjct: 1 MQNHLSSARLATVADFFQARTDSDLMGCYSWCQAVGASLLPILGDYEVSLRNALHRGLSQ 60 Query: 156 HYGAAESFGWMMP-RPNPAHAINPAAPAVLPPLHKLSPKSRADVICAMEKVM----GRKP 210 +YG A+SF WM RPNPA NP AP + H ++P+ + D+ KV GR P Sbjct: 61 YYGKADSFEWMFKTRPNPAKVSNPNAPDL--AWHSMTPRMQGDIEDVTGKVRRRNRGRSP 118 Query: 211 SSYIVTPDDVVAALPFGFWEVLISGLAHRAQPAGLQAAILAEVFPHAPDIALFAHDSPEF 270 TPDD+V+ L FGFWE LI+GLAH+A PA +Q +L+ FP+ P + A+ F Sbjct: 119 -----TPDDIVSQLSFGFWEHLITGLAHKAHPADMQRRVLSLAFPNGPTMGTAAYHDSAF 173 Query: 271 RKRVVTLLKRIRDVRNRIGHHDALWNLPEFDRLGVLGFIPRRPRHTVNSLRRLVDHLSWF 330 ++ LL ++RD+RNRIGHHD LW EFD G GFIPRRPRHT+ SLR + +SW Sbjct: 174 VDQLKGLLYQLRDIRNRIGHHDQLWKTAEFDAHGNRGFIPRRPRHTLISLREFLGRISWM 233 Query: 331 AGWIDPVISLHLRQSDHWWSLQVLLDRHALAIYRRTGGRAGSYRLVLAQARVPC 384 A WID I+ H+R SDHWW+LQ LL + ALA+YR+ GG+ GS+ VL A PC Sbjct: 234 ANWIDQEIANHMRNSDHWWTLQALLSQQALAVYRKNGGKVGSFEAVLRLA--PC 285 >ref|ZP_06064801.1| predicted protein [Acinetobacter johnsonii SH046] gb|EEY94624.1| predicted protein [Acinetobacter johnsonii SH046] Length = 304 Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 84/289 (29%), Positives = 129/289 (44%), Gaps = 27/289 (9%) Query: 103 PRLSTLRQFFLTTSYQDTLGCYAWNQAVAAGLLPLLGDVEVSLRNALHGALSRHYGAAES 162 PR T + FF S + G Y W+Q +AA +L D EV R+ +H A++ Sbjct: 14 PRKQTYQTFFNVNSESEIQGVYQWHQDLAAEAFLILCDFEVIFRSKIHKAIASLNCYPNQ 73 Query: 163 FGWMMPRPNPAHAINPAAPAVLPP---------------LH---KLSPKSRADVICAMEK 204 W++ + +N + LH +LS K R + I + + Sbjct: 74 DDWIVGSRQQQNLVNKLQQDMFTTQQEGKDFYPDARNYNLHSSFQLSKKDRQNFINLICE 133 Query: 205 VMGRKPSSYIVTPDDVVAALPFGFWEVLISGLAHRAQPAGLQAAILAEVFPHAPDIALFA 264 + + +S+ T DD+VA++ FGFW L+ L Q L L E+FPH+ Sbjct: 134 YIEKGKTSF--THDDLVASVSFGFWVSLLKRLEWLKQ-GSLITPYLTEIFPHSTKGFDLN 190 Query: 265 HDSPEFRKRVVTLLKRIRDVRNRIGHHDALWNLPEFDRLGVLGFIPRRPRHTVNSLRRLV 324 H K ++ L RI+ RNRIGHHD++ +PE +G F PR +NSL+ L+ Sbjct: 191 H-----LKSILDTLNRIKSFRNRIGHHDSIMRIPE-PVVGHADFYPRTVNQMINSLKILL 244 Query: 325 DHLSWFAGWIDPVISLHLRQSDHWWSLQVLLDRHALAIYRRTGGRAGSY 373 L IDP S + +S +W S +LL + +Y+ G SY Sbjct: 245 LSLLDLVRDIDPQCSTAIEESKNWKSFFLLLKIESFQVYKGNNGSLESY 293 >ref|YP_004232501.1| Abi family protein [Acidovorax avenae subsp. avenae ATCC 19860] gb|ADX43934.1| Abi family protein [Acidovorax avenae subsp. avenae ATCC 19860] Length = 276 Score = 85.5 bits (210), Expect = 2e-14, Method: Composition-based stats. Identities = 83/282 (29%), Positives = 122/282 (43%), Gaps = 32/282 (11%) Query: 96 MLKHLTAPRLSTLRQFFLTTSYQDTLGCYAWNQAVAAGLLPLLGDVEVSLRNALHGALSR 155 ++ ++APRLS+ R+FF + ++ LG Y W++ V A L L VEV++RN H ALS+ Sbjct: 10 LIAAISAPRLSSYRKFFQPQTDEELLGVYLWHEDVCAALNRNLKWVEVTMRNRFHRALSQ 69 Query: 156 HYGAAESFGWMMPRPNPAHAINPAAPAVLPPLHKLSPKSRADVICAMEKVMG--RKPSSY 213 YG G P + H +N LS SR V G R+P+ Sbjct: 70 RYGT----GAAGPSRDWYHHLN------------LSSHSRDSVRKVTHSTTGQLRRPAP- 112 Query: 214 IVTPDDVVAALPFGFWEVLISGLAHRAQPAGLQAAILAEVFP-HAPDIALFAHDSPEFRK 272 PDDVVA GFW L+ IL EV P H + A + + R Sbjct: 113 --APDDVVAKQTLGFWPALLDVSQDVRGTRLAWGDILIEVVPGHRQNTAAYWR-AQAHRD 169 Query: 273 RVVTLLKRIRDVRNRIGHHDALWN---LPEFDR------LGVLGFIPRRPRHTVNSLRRL 323 + L R +RNRI HH+ +W L E R + + PR P V L+ Sbjct: 170 ALFARLDLCRYLRNRIAHHEPIWKQGALYEESRPRQRRPVALAAPAPRTPGEAVQRLKLQ 229 Query: 324 VDHLSWFAGWIDPVISLHLRQSDHWWSLQVLLDRHALAIYRR 365 D + W+ P ++ ++ + + LL AL +YR+ Sbjct: 230 HDRVMDLLHWLSPEVASMVKDGTSYQDAEKLLQPGALDLYRQ 271 >ref|ZP_04616730.1| hypothetical protein yruck0001_8050 [Yersinia ruckeri ATCC 29473] gb|EEP98798.1| hypothetical protein yruck0001_8050 [Yersinia ruckeri ATCC 29473] Length = 326 Score = 83.2 bits (204), Expect = 9e-14, Method: Composition-based stats. Identities = 64/201 (31%), Positives = 91/201 (45%), Gaps = 33/201 (16%) Query: 98 KHLTAPRLSTLRQFFLT-TSYQDTLGCYAWNQAVAAGLLPLLGDVEVSLRNALHGALSRH 156 + L+ PR +T + L TS + LG Y WN+ +A+ LP+L VE+SLRNA+H + Sbjct: 8 QSLSTPRFATYQLPILGGTSPEQCLGMYLWNKQLASAFLPVLQIVEISLRNAIH----QS 63 Query: 157 YGAAESFGWMMPRPNPAHAINPAAPAVLPPLHKLSPKSRADVICAMEKVMGRKPSSYIVT 216 Y AA+ P P A A + + RKP T Sbjct: 64 YVAAQEAEIEKSFPQPTWAARKEA-------------------AKRQLTIDRKPH----T 100 Query: 217 PDDVVAALPFGFWEVLISG--LAHRAQPAGLQAAILAEVFPHAPDIALFAHDSPEFRKRV 274 P++++A L FGFW L+ RA L + AEVFP+A D +P + Sbjct: 101 PENIIAKLTFGFWVSLVKNDYDTRRATYLTLWPDLRAEVFPNAVDTNT---RNPLSINSI 157 Query: 275 VTLLKRIRDVRNRIGHHDALW 295 LK I +RNR+ HH+ LW Sbjct: 158 GNELKEINKIRNRLSHHEPLW 178