BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.5274.p         (86 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003777518.1| [4Fe-4S]-type ferredoxin [Herbaspirillum ser...   145   2e-33
ref|YP_001101134.1| 4Fe-4S ferredoxin-type protein [Herminiimona...   127   7e-28
ref|YP_001354824.1| ferredoxin [Janthinobacterium sp. Marseille]...   126   9e-28
ref|YP_004751245.1| ferredoxin [Collimonas fungivorans Ter331] >...   125   2e-27
ref|ZP_08273662.1| 4Fe-4S ferredoxin, iron-sulfur binding [Oxalo...   124   5e-27

>ref|YP_003777518.1| [4Fe-4S]-type ferredoxin [Herbaspirillum seropedicae SmR1]
 gb|ADJ65610.1| [4Fe-4S]-type ferredoxin protein [Herbaspirillum seropedicae
          SmR1]
          Length = 86

 Score =  145 bits (365), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 85/86 (98%), Positives = 86/86 (100%)

Query: 1  MALMITDDCINCDVCEPECPNEAIYMGPQIYEIDPDKCTECVGHFEEPQCQQVCPVACIP 60
          MALMITDDCINCDVCEPECPNEAIYMGPQIYEIDPDKCTECVGHFEEPQCQQVCPVACIP
Sbjct: 1  MALMITDDCINCDVCEPECPNEAIYMGPQIYEIDPDKCTECVGHFEEPQCQQVCPVACIP 60

Query: 61 FNPAWRESREQLMDKYERLQAEAKRS 86
          FNPAWRESREQLM+KYERLQAEAKRS
Sbjct: 61 FNPAWRESREQLMEKYERLQAEAKRS 86


>ref|YP_001101134.1| 4Fe-4S ferredoxin-type protein [Herminiimonas arsenicoxydans]
 emb|CAL63013.1| Ferredoxin [Herminiimonas arsenicoxydans]
          Length = 87

 Score =  127 bits (318), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 71/84 (84%), Positives = 78/84 (92%)

Query: 1  MALMITDDCINCDVCEPECPNEAIYMGPQIYEIDPDKCTECVGHFEEPQCQQVCPVACIP 60
          MAL+ITD+CINCDVCEPECPN+AIYMG +IYEIDP KCTECVGHF+EPQCQQVCPV CIP
Sbjct: 1  MALLITDECINCDVCEPECPNDAIYMGQEIYEIDPTKCTECVGHFDEPQCQQVCPVECIP 60

Query: 61 FNPAWRESREQLMDKYERLQAEAK 84
          FNPAWRES+E+L  KYERLQAE K
Sbjct: 61 FNPAWRESKEELQAKYERLQAELK 84


>ref|YP_001354824.1| ferredoxin [Janthinobacterium sp. Marseille]
 gb|ABR91797.1| ferredoxin [Janthinobacterium sp. Marseille]
          Length = 87

 Score =  126 bits (317), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 70/84 (83%), Positives = 78/84 (92%)

Query: 1  MALMITDDCINCDVCEPECPNEAIYMGPQIYEIDPDKCTECVGHFEEPQCQQVCPVACIP 60
          MAL+ITD+CINCDVCEPECPN+AIYMG +IYEIDP KCTECVGHF+EPQCQQVCPV+CIP
Sbjct: 1  MALLITDECINCDVCEPECPNDAIYMGQEIYEIDPTKCTECVGHFDEPQCQQVCPVSCIP 60

Query: 61 FNPAWRESREQLMDKYERLQAEAK 84
          FNP WRES+E+L  KYERLQAE K
Sbjct: 61 FNPEWRESKEELQAKYERLQAELK 84


>ref|YP_004751245.1| ferredoxin [Collimonas fungivorans Ter331]
 gb|AEK60422.1| Ferredoxin [Collimonas fungivorans Ter331]
          Length = 91

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 69/82 (84%), Positives = 73/82 (89%)

Query: 1  MALMITDDCINCDVCEPECPNEAIYMGPQIYEIDPDKCTECVGHFEEPQCQQVCPVACIP 60
          MAL+ITDDCINCDVCEPECPN AIYMGP IYEIDP KCTECVGHF EPQCQQVCPV+CIP
Sbjct: 1  MALLITDDCINCDVCEPECPNGAIYMGPLIYEIDPHKCTECVGHFNEPQCQQVCPVSCIP 60

Query: 61 FNPAWRESREQLMDKYERLQAE 82
           +PAW ES+EQL  KYERLQ E
Sbjct: 61 LDPAWHESKEQLQAKYERLQVE 82


>ref|ZP_08273662.1| 4Fe-4S ferredoxin, iron-sulfur binding [Oxalobacteraceae
          bacterium IMCC9480]
 gb|EGF32865.1| 4Fe-4S ferredoxin, iron-sulfur binding [Oxalobacteraceae
          bacterium IMCC9480]
          Length = 86

 Score =  124 bits (310), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 62/80 (77%), Positives = 77/80 (96%)

Query: 1  MALMITDDCINCDVCEPECPNEAIYMGPQIYEIDPDKCTECVGHFEEPQCQQVCPVACIP 60
          MAL+ITD+CINCDVCEPECPN+AI++GP+IY+IDP KCTECVGHF EPQCQQVCPV+CIP
Sbjct: 1  MALLITDECINCDVCEPECPNDAIFLGPEIYQIDPGKCTECVGHFNEPQCQQVCPVSCIP 60

Query: 61 FNPAWRESREQLMDKYERLQ 80
          F+PAWRES+++L+ K++RLQ
Sbjct: 61 FDPAWRESKDELLLKFDRLQ 80