BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5272.p (372 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777516.1| GGDEF domain-containing protein [Herbaspiril... 640 0.0 ref|YP_001354823.1| hypothetical protein mma_3133 [Janthinobacte... 354 2e-95 emb|CAL63012.2| Conserved hypothetical protein; putative GGDEF d... 351 1e-94 ref|ZP_08273661.1| hypothetical protein, Putative conserved doma... 339 6e-91 ref|YP_001101133.1| hypothetical protein HEAR2898 [Herminiimonas... 301 8e-80 >ref|YP_003777516.1| GGDEF domain-containing protein [Herbaspirillum seropedicae SmR1] gb|ADJ65608.1| GGDEF domain containing protein [Herbaspirillum seropedicae SmR1] Length = 372 Score = 640 bits (1652), Expect = 0.0, Method: Composition-based stats. Identities = 335/372 (90%), Positives = 356/372 (95%) Query: 1 MKATIDMESLIADNEQLRSELQELLQQAHINQSIIERHQAFDLKLIGASEFRELIDVILT 60 M++ ID E+LIADNEQLR+ELQ+LLQQAHINQSIIERHQAFDLKLIGASEFRELI+V+LT Sbjct: 1 MRSAIDSEALIADNEQLRAELQDLLQQAHINQSIIERHQAFDLKLIGASEFRELIEVMLT 60 Query: 61 VMPGVFSLETVTLSLIDGDYAIQRILRDLQIGVNEFPKLLFLKAPLHFIDEDGPLDDEKP 120 VMPGVFSLETVTLSLIDGDYAIQRILRDLQIG+NEFPKLLFLK L F D+D DEKP Sbjct: 61 VMPGVFSLETVTLSLIDGDYAIQRILRDLQIGINEFPKLLFLKQALAFPDDDLTRADEKP 120 Query: 121 RLGQYVPALHGALFPHYQPVSVAVLPLVRQHRLLGYLSLGSAYQERFTRSLATDFIQRLA 180 RLG YV ALHG LFPHY+PVSVAVLPLVRQHRLLGYL+LGSAY ERFTRSLATDFI+RLA Sbjct: 121 RLGPYVAALHGPLFPHYEPVSVAVLPLVRQHRLLGYLALGSAYGERFTRSLATDFIERLA 180 Query: 181 TVAAICLENVINNERLKHIGLTDPLTGVNNRRYIEQRMQEEVARSQRDRSALSCLFIDID 240 T+AA+CLENVINNERLKHIGLTDPLTGVNNRRYIEQRMQEEVARSQRDRSALSCLFIDID Sbjct: 181 TIAAVCLENVINNERLKHIGLTDPLTGVNNRRYIEQRMQEEVARSQRDRSALSCLFIDID 240 Query: 241 HFKRVNDQFGHQSGDDVLREVAARIKKELRLSDALGRFGGEEFVVLLTHATRDDAARIAE 300 HFKRVNDQFGHQSGDDVLREVAARIKKELRLSDALGRFGGEEFVVLLTHATR+DAARIAE Sbjct: 241 HFKRVNDQFGHQSGDDVLREVAARIKKELRLSDALGRFGGEEFVVLLTHATREDAARIAE 300 Query: 301 RIRAGICSRGVMIEGSRDPLRISASIGAASLSPPDRSRPAAEVKQAMLKAADQALYQAKE 360 RIRAG+CSRGVMIEGSRDPL+I+ASIGAA+L+PPDRSRPAAEVKQAMLKAADQALYQAKE Sbjct: 301 RIRAGVCSRGVMIEGSRDPLKITASIGAAALTPPDRSRPAAEVKQAMLKAADQALYQAKE 360 Query: 361 AGRNRVVQAASD 372 AGRNRV+ AA D Sbjct: 361 AGRNRVMLAAGD 372 >ref|YP_001354823.1| hypothetical protein mma_3133 [Janthinobacterium sp. Marseille] gb|ABR90587.1| Hypothetical protein mma_3133 [Janthinobacterium sp. Marseille] Length = 352 Score = 354 bits (908), Expect = 2e-95, Method: Composition-based stats. Identities = 198/360 (55%), Positives = 259/360 (71%), Gaps = 14/360 (3%) Query: 17 LRSELQELLQQAHINQSIIERHQAFDLKLIGASEFRELIDVILTVMPGVFSLETVTLSLI 76 +R++L+ LL+QAH NQ I++R+Q FDLK IGA+ F+ELID + + L+ +TLSLI Sbjct: 1 MRTQLKLLLEQAHRNQQIMQRYQEFDLKFIGANSFQELIDSVFDTLTEASELDVITLSLI 60 Query: 77 DGDYAIQRILRDLQIGVNEFPKLLFLKAPLHFIDEDGPLD----DEKPRLGQYVPALHGA 132 D I+RIL DL+I ++++P LLF++ D+DG + KP LG Y H Sbjct: 61 DPAAEIRRILSDLRIDISDYPNLLFVE------DKDGVGEIAHPARKPALGPYNTMQHKR 114 Query: 133 LFPH--YQPVSVAVLPLVRQHRLLGYLSLGSAYQERFTRSLATDFIQRLATVAAICLENV 190 LFP +P SVA+LPL+R++ L+G+LSLGS RFT ++A+DF+Q A++ AIC+ENV Sbjct: 115 LFPDTVLKPASVAILPLIRRNTLIGWLSLGSLDPTRFTANMASDFLQHRASIVAICVENV 174 Query: 191 INNERLKHIGLTDPLTGVNNRRYIEQRMQEEVARSQRDRSALSCLFIDIDHFKRVNDQFG 250 INNERL+HIGLTDPLTGVNNRRY+E+R+ EEV R+QR ALS ++ID+DHFK+VND FG Sbjct: 175 INNERLQHIGLTDPLTGVNNRRYVERRLLEEVGRTQRHGYALSGMYIDLDHFKKVNDNFG 234 Query: 251 HQSGDDVLREVAARIKKELRLSDALGRFGGEEFVVLLTHATRDDAARIAERIRAGICSRG 310 HQ GD+VL EVA RIK ELRLSDALGRFGGEEFVVLL A D A +AERIRA + R Sbjct: 235 HQGGDEVLCEVANRIKAELRLSDALGRFGGEEFVVLLIDAPLDAALVVAERIRASVSERP 294 Query: 311 VMIEGSRDPLRISASIGAASLSPPDRSRPAAEVKQAMLKAADQALYQAKEAGRNRVVQAA 370 +++ S + LR + SIG ASL+ DR AA V Q +L AD ALYQAK+ GRN+V+ A+ Sbjct: 295 IVLS-SGEELRATVSIGVASLNTADRQDSAA-VAQQLLAKADLALYQAKKEGRNKVISAS 352 >emb|CAL63012.2| Conserved hypothetical protein; putative GGDEF domain [Herminiimonas arsenicoxydans] Length = 362 Score = 351 bits (900), Expect = 1e-94, Method: Composition-based stats. Identities = 195/357 (54%), Positives = 256/357 (71%), Gaps = 7/357 (1%) Query: 13 DNEQLRSELQELLQQAHINQSIIERHQAFDLKLIGASEFRELIDVILTVMPGVFSLETVT 72 +N QLRS+L+ LL+QAH NQ I++R+Q FDLK IGA+ F+ELID + + L+ VT Sbjct: 8 ENSQLRSQLKLLLEQAHRNQQIMQRYQEFDLKFIGANTFQELIDSVFDTLTEASELDVVT 67 Query: 73 LSLIDGDYAIQRILRDLQIGVNEFPKLLFLKAPLHFIDEDGPLDDEKPRLGQYVPALHGA 132 LSLID D I+RIL DL+I V+++P L+F+ IDE K LG Y H Sbjct: 68 LSLIDPDAEIRRILTDLRIDVSDYPNLIFIAES---IDEMAH-PARKASLGIYNSMQHRR 123 Query: 133 LFPH--YQPVSVAVLPLVRQHRLLGYLSLGSAYQERFTRSLATDFIQRLATVAAICLENV 190 LFP +P SVA+LPL+R++ L+G+LSLGS RFT +A+DF+Q A++ AIC+ENV Sbjct: 124 LFPDTVLKPSSVAILPLIRRNALIGWLSLGSLDATRFTSGMASDFLQHRASIVAICVENV 183 Query: 191 INNERLKHIGLTDPLTGVNNRRYIEQRMQEEVARSQRDRSALSCLFIDIDHFKRVNDQFG 250 INNERL+HIGLTDPLTGVNNRRY+E+R+ EEV R+QR LS ++ID+D FK+VND +G Sbjct: 184 INNERLQHIGLTDPLTGVNNRRYVERRLLEEVGRTQRHGHTLSAMYIDLDFFKKVNDNYG 243 Query: 251 HQSGDDVLREVAARIKKELRLSDALGRFGGEEFVVLLTHATRDDAARIAERIRAGICSRG 310 HQ GD+VLREVAARIK ELRLSDALGRFGGEEFVVLL A + A +AER+R+ I +R Sbjct: 244 HQGGDEVLREVAARIKAELRLSDALGRFGGEEFVVLLIDAGMEAALAVAERMRSSIANRP 303 Query: 311 VMIEGSRDPLRISASIGAASLSPPDRSRPAAEVKQAMLKAADQALYQAKEAGRNRVV 367 +++ S + LR+S SIG ++L +R A + Q +L ADQALY AK+ GRN+V+ Sbjct: 304 LVLS-SGEQLRLSVSIGVSTLQAIERKDEVATIAQQLLAKADQALYLAKQGGRNKVM 359 >ref|ZP_08273661.1| hypothetical protein, Putative conserved domain [Oxalobacteraceae bacterium IMCC9480] gb|EGF32864.1| hypothetical protein, Putative conserved domain [Oxalobacteraceae bacterium IMCC9480] Length = 364 Score = 339 bits (869), Expect = 6e-91, Method: Composition-based stats. Identities = 191/368 (51%), Positives = 244/368 (66%), Gaps = 15/368 (4%) Query: 10 LIADNEQLRSELQELLQQAHINQSIIERHQAFDLKLIGASEFRELIDVILTVMPGVFSLE 69 L+ +N QLR L LL+QA NQ I+ RHQAFDLK I A+ RELI+ I + L+ Sbjct: 5 LVTENIQLRDRLVLLLEQAQRNQKIMRRHQAFDLKFIAANSLRELIESIFDTLSESSQLD 64 Query: 70 TVTLSLIDGDYAIQRILRDLQIGVNEFPKLLFLKAPLHFIDEDGPL-----DDEKPRLGQ 124 VTL L+D +Y I+RI+ DL + EFP LLF ID + L P LG Sbjct: 65 VVTLCLVDTEYDIRRIMVDLALDQAEFPNLLF-------IDREAELGLTLAQMTHPVLGH 117 Query: 125 YVPALHGALFPH--YQPVSVAVLPLVRQHRLLGYLSLGSAYQERFTRSLATDFIQRLATV 182 + A HG +FP P SVAV+PL+RQ RL+G LSLGS ++ RF +A+DFI+ L + Sbjct: 118 FSSARHGVIFPKQVLTPASVAVVPLLRQGRLIGCLSLGSLHEGRFASGMASDFIEHLGCI 177 Query: 183 AAICLENVINNERLKHIGLTDPLTGVNNRRYIEQRMQEEVARSQRDRSALSCLFIDIDHF 242 AICLENVINNERLK IGLTD LTGVNNRRY+E+R+QEE+ R++R LSC++IDIDHF Sbjct: 178 IAICLENVINNERLKRIGLTDSLTGVNNRRYLERRLQEEIGRTRRQEFPLSCMYIDIDHF 237 Query: 243 KRVNDQFGHQSGDDVLREVAARIKKELRLSDALGRFGGEEFVVLLTHATRDDAARIAERI 302 K++ND GHQ GD+VL++VA RIK ELRLSDALGRFGGEEFVVLL A A +AERI Sbjct: 238 KKINDSAGHQGGDEVLQQVALRIKAELRLSDALGRFGGEEFVVLLIDAGLSHALVVAERI 297 Query: 303 RAGICSRGVMIEGSRDPLRISASIGAASLSPPDRSRPAAEVKQAMLKAADQALYQAKEAG 362 RA I ++ +++ L + SIG LS DR P + ++ AD+ALY+AK++G Sbjct: 298 RASIANQPIVLSDGA-ALTATVSIGVTELSAADRVHPVEKTALQLVARADEALYRAKQSG 356 Query: 363 RNRVVQAA 370 RNRV+ A Sbjct: 357 RNRVIGTA 364 >ref|YP_001101133.1| hypothetical protein HEAR2898 [Herminiimonas arsenicoxydans] Length = 314 Score = 301 bits (772), Expect = 8e-80, Method: Composition-based stats. Identities = 169/316 (53%), Positives = 222/316 (70%), Gaps = 7/316 (2%) Query: 54 LIDVILTVMPGVFSLETVTLSLIDGDYAIQRILRDLQIGVNEFPKLLFLKAPLHFIDEDG 113 +ID + + L+ VTLSLID D I+RIL DL+I V+++P L+F+ IDE Sbjct: 1 MIDSVFDTLTEASELDVVTLSLIDPDAEIRRILTDLRIDVSDYPNLIFIAES---IDEMA 57 Query: 114 PLDDEKPRLGQYVPALHGALFPH--YQPVSVAVLPLVRQHRLLGYLSLGSAYQERFTRSL 171 K LG Y H LFP +P SVA+LPL+R++ L+G+LSLGS RFT + Sbjct: 58 H-PARKASLGIYNSMQHRRLFPDTVLKPSSVAILPLIRRNALIGWLSLGSLDATRFTSGM 116 Query: 172 ATDFIQRLATVAAICLENVINNERLKHIGLTDPLTGVNNRRYIEQRMQEEVARSQRDRSA 231 A+DF+Q A++ AIC+ENVINNERL+HIGLTDPLTGVNNRRY+E+R+ EEV R+QR Sbjct: 117 ASDFLQHRASIVAICVENVINNERLQHIGLTDPLTGVNNRRYVERRLLEEVGRTQRHGHT 176 Query: 232 LSCLFIDIDHFKRVNDQFGHQSGDDVLREVAARIKKELRLSDALGRFGGEEFVVLLTHAT 291 LS ++ID+D FK+VND +GHQ GD+VLREVAARIK ELRLSDALGRFGGEEFVVLL A Sbjct: 177 LSAMYIDLDFFKKVNDNYGHQGGDEVLREVAARIKAELRLSDALGRFGGEEFVVLLIDAG 236 Query: 292 RDDAARIAERIRAGICSRGVMIEGSRDPLRISASIGAASLSPPDRSRPAAEVKQAMLKAA 351 + A +AER+R+ I +R +++ S + LR+S SIG ++L +R A + Q +L A Sbjct: 237 MEAALAVAERMRSSIANRPLVLS-SGEQLRLSVSIGVSTLQAIERKDEVATIAQQLLAKA 295 Query: 352 DQALYQAKEAGRNRVV 367 DQALY AK+ GRN+V+ Sbjct: 296 DQALYLAKQGGRNKVM 311