BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.5270.p         (370 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_02911361.1| hypothetical protein BamMEX5DRAFT_6715 [Burkh...    88   3e-15

>ref|ZP_02911361.1| hypothetical protein BamMEX5DRAFT_6715 [Burkholderia ambifaria
           MEX-5]
 gb|EDT37509.1| hypothetical protein BamMEX5DRAFT_6715 [Burkholderia ambifaria
           MEX-5]
          Length = 96

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 68/95 (71%), Positives = 75/95 (78%)

Query: 276 KRQPMVVSKIAALREKADSALPITKGARVMLSTPPAIISCTSPDLMARAAMPTASRLEPH 335
           KRQP+VVS +AA R  A +ALPIT GARVMLSTPPAII   SP L+ARAA+PTAS  EPH
Sbjct: 2   KRQPIVVSNMAAWRANALAALPITNGARVMLSTPPAIIKRASPALIARAAVPTASMPEPH 61

Query: 336 RRLRVVPGISMGRPASKPAMRATLRLSSPAWLAQP 370
            R  VVPG ++GRPAS   MRATLRLSSPAW AQP
Sbjct: 62  NRFSVVPGTAVGRPASSADMRATLRLSSPAWFAQP 96