BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5269.p (401 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777513.1| 3-oxoadipyl-CoA thiolase [Herbaspirillum ser... 670 0.0 ref|YP_160280.1| beta-ketoadipyl CoA thiolase [Aromatoleum aroma... 622 e-176 ref|YP_158582.1| beta-ketoadipyl CoA thiolase [Aromatoleum aroma... 604 e-171 gb|AAN39378.1| 3-ketoadipyl-CoA thiolase [Azoarcus evansii] 590 e-166 ref|YP_001789881.1| beta-ketoadipyl CoA thiolase [Leptothrix cho... 582 e-164 >ref|YP_003777513.1| 3-oxoadipyl-CoA thiolase [Herbaspirillum seropedicae SmR1] gb|ADJ65605.1| 3-oxoadipyl-CoA thiolase protein [Herbaspirillum seropedicae SmR1] Length = 401 Score = 670 bits (1729), Expect = 0.0, Method: Composition-based stats. Identities = 380/401 (94%), Positives = 389/401 (97%) Query: 1 MEAFICDAIRTPFGRFGGALSGVRADDLAAAPIRSLMERNPGVDWRCVDDILYGCANQAG 60 MEA ICDAIRTPFGR+GGAL VRADDLAAAPIRSLMERNPGVDW V+DILYGCANQAG Sbjct: 1 MEALICDAIRTPFGRYGGALGAVRADDLAAAPIRSLMERNPGVDWSRVEDILYGCANQAG 60 Query: 61 EDNRNVARMAGLLAGLPIEIPGTTLNRLCGSSLDAVGMAARAIKSGEVQLMIAGGVESMT 120 EDNRNVARMAGLLAGLPI +PG+T+NRLCGSSLDAVGMAARAIKSGEVQLMIAGGVESMT Sbjct: 61 EDNRNVARMAGLLAGLPIAVPGSTVNRLCGSSLDAVGMAARAIKSGEVQLMIAGGVESMT 120 Query: 121 RAPFVMGKAESAFSRSAAIFDTTIGWRFVNPLMKAQYGIDSMPETAENVATDFNINRADQ 180 RAPFVMGKAESAF+RSAAIFDTTIGWRFVNPLMKAQYGIDSMPETAENVATDF INRADQ Sbjct: 121 RAPFVMGKAESAFARSAAIFDTTIGWRFVNPLMKAQYGIDSMPETAENVATDFQINRADQ 180 Query: 181 DAFALRSQQRWAAAQEASFFAGEIAPLAIPQKKGDPLIVTTDEHPRPDTTLATLAKLKGV 240 DAFALRSQQRWAAAQ A FFAGEIAPL IPQKKGDPL+VTTDEHPRPDTTLATLAKLKGV Sbjct: 181 DAFALRSQQRWAAAQAAGFFAGEIAPLTIPQKKGDPLVVTTDEHPRPDTTLATLAKLKGV 240 Query: 241 VRPDGTVTAGNASGVNDGACALLLASPKAADLYRLKPRARVLGMATAGVAPRIMGFGPAP 300 VRPDGTVTAGNASGVNDGACALLLASPKAADLYRLKPRARVLGMATAGVAPRIMGFGPAP Sbjct: 241 VRPDGTVTAGNASGVNDGACALLLASPKAADLYRLKPRARVLGMATAGVAPRIMGFGPAP 300 Query: 301 AARKVLAQVGLTLAQMDVIELNEAFAAQGLAVTRDLGLPDDAAHVNPNGGAIAIGHPLGA 360 A RKVLAQVGLTLAQMDVIELNEAFAAQGLAV RDLGLPDDAAHVNPNGGAIAIGHPLGA Sbjct: 301 AVRKVLAQVGLTLAQMDVIELNEAFAAQGLAVMRDLGLPDDAAHVNPNGGAIAIGHPLGA 360 Query: 361 SGARLVTTALNQLERTGGRYALCTMCIGVGQGIALVIERVA 401 SGARLVTTA+NQLER+GGRYALCTMCIGVGQGIALVIERVA Sbjct: 361 SGARLVTTAINQLERSGGRYALCTMCIGVGQGIALVIERVA 401 >ref|YP_160280.1| beta-ketoadipyl CoA thiolase [Aromatoleum aromaticum EbN1] emb|CAI09379.1| putative 3-ketoadipyl-CoA thiolase [Aromatoleum aromaticum EbN1] Length = 401 Score = 622 bits (1604), Expect = e-176, Method: Composition-based stats. Identities = 339/398 (85%), Positives = 365/398 (91%) Query: 3 AFICDAIRTPFGRFGGALSGVRADDLAAAPIRSLMERNPGVDWRCVDDILYGCANQAGED 62 A+ICDAIRTPFGR+GG LS VRADDLAA PIR+L+ERNP VDW VDD++YGCANQAGED Sbjct: 4 AYICDAIRTPFGRYGGTLSSVRADDLAALPIRALVERNPDVDWAAVDDVIYGCANQAGED 63 Query: 63 NRNVARMAGLLAGLPIEIPGTTLNRLCGSSLDAVGMAARAIKSGEVQLMIAGGVESMTRA 122 NRNVARMA LLAGLP ++PGTT+NRLCGSSLDAVGMAARAIKSGE LMIAGGVESM+RA Sbjct: 64 NRNVARMAALLAGLPQDVPGTTVNRLCGSSLDAVGMAARAIKSGEADLMIAGGVESMSRA 123 Query: 123 PFVMGKAESAFSRSAAIFDTTIGWRFVNPLMKAQYGIDSMPETAENVATDFNINRADQDA 182 PFVMGKA++AFSRSA I DTTIGWRFVNPLMKAQYGIDSMPETAENVATDFNI+RADQDA Sbjct: 124 PFVMGKADTAFSRSAKIEDTTIGWRFVNPLMKAQYGIDSMPETAENVATDFNISRADQDA 183 Query: 183 FALRSQQRWAAAQEASFFAGEIAPLAIPQKKGDPLIVTTDEHPRPDTTLATLAKLKGVVR 242 ALRSQQRWAAA EA FA EI P+AIPQKKG+P + TTDEHPRP+TTL TLAKLKGVVR Sbjct: 184 LALRSQQRWAAANEAGLFANEIVPVAIPQKKGEPKLFTTDEHPRPETTLETLAKLKGVVR 243 Query: 243 PDGTVTAGNASGVNDGACALLLASPKAADLYRLKPRARVLGMATAGVAPRIMGFGPAPAA 302 PDGTVTAGNASGVNDGACA+LLAS A + YRLK RARV+ MA AG+APRIMGFGP+PA+ Sbjct: 244 PDGTVTAGNASGVNDGACAVLLASEAAVERYRLKARARVVAMAAAGLAPRIMGFGPSPAS 303 Query: 303 RKVLAQVGLTLAQMDVIELNEAFAAQGLAVTRDLGLPDDAAHVNPNGGAIAIGHPLGASG 362 +KVLA+ GLTLA MDVIELNEAFAAQ LAVTRDLGL DDAAHVNPNGGAIA+GHPLGASG Sbjct: 304 KKVLAKAGLTLADMDVIELNEAFAAQALAVTRDLGLADDAAHVNPNGGAIAMGHPLGASG 363 Query: 363 ARLVTTALNQLERTGGRYALCTMCIGVGQGIALVIERV 400 ARLVT ALNQLERTGGRYALCTMCIGVGQGIALVIERV Sbjct: 364 ARLVTAALNQLERTGGRYALCTMCIGVGQGIALVIERV 401 >ref|YP_158582.1| beta-ketoadipyl CoA thiolase [Aromatoleum aromaticum EbN1] emb|CAI07681.1| 3-ketoadipyl-CoA thiolase [Aromatoleum aromaticum EbN1] Length = 402 Score = 604 bits (1557), Expect = e-171, Method: Composition-based stats. Identities = 321/397 (80%), Positives = 356/397 (89%) Query: 4 FICDAIRTPFGRFGGALSGVRADDLAAAPIRSLMERNPGVDWRCVDDILYGCANQAGEDN 63 +ICDAIRTPFGR+GG LSGVRADDLAA PI++L+ERNPGVDW+ VDD+LYGCANQAGEDN Sbjct: 6 YICDAIRTPFGRYGGTLSGVRADDLAALPIKALVERNPGVDWQAVDDVLYGCANQAGEDN 65 Query: 64 RNVARMAGLLAGLPIEIPGTTLNRLCGSSLDAVGMAARAIKSGEVQLMIAGGVESMTRAP 123 RNVARMA LLAGLP+E+PG+T+NRLCGSSLDA+GMAARAI+SGE +LMIAGGVESM+RAP Sbjct: 66 RNVARMAALLAGLPVEVPGSTINRLCGSSLDAIGMAARAIRSGETELMIAGGVESMSRAP 125 Query: 124 FVMGKAESAFSRSAAIFDTTIGWRFVNPLMKAQYGIDSMPETAENVATDFNINRADQDAF 183 FV+GKA+SAFSRSA I DTTIGWRFVNPLMKAQYGIDSMPETAENVATDF ++RADQDAF Sbjct: 126 FVLGKADSAFSRSAKIEDTTIGWRFVNPLMKAQYGIDSMPETAENVATDFGVSRADQDAF 185 Query: 184 ALRSQQRWAAAQEASFFAGEIAPLAIPQKKGDPLIVTTDEHPRPDTTLATLAKLKGVVRP 243 ALRSQQRWAAA E FF EI + +P+KKG+PL++ DEHPRPDTTLATLAKLKGVVRP Sbjct: 186 ALRSQQRWAAAAERGFFEREIVKVEVPRKKGEPLVLAADEHPRPDTTLATLAKLKGVVRP 245 Query: 244 DGTVTAGNASGVNDGACALLLASPKAADLYRLKPRARVLGMATAGVAPRIMGFGPAPAAR 303 DG+VTAGNASGVNDGACALLLAS A + L PRARVLG A AGVAPRIMG GPAPA Sbjct: 246 DGSVTAGNASGVNDGACALLLASEAAVKRHGLTPRARVLGSAAAGVAPRIMGIGPAPATL 305 Query: 304 KVLAQVGLTLAQMDVIELNEAFAAQGLAVTRDLGLPDDAAHVNPNGGAIAIGHPLGASGA 363 K+LA++G+++ D IELNEAFAAQGLAV R LGLPDD A+VNPNGGAIAIGHPLGASGA Sbjct: 306 KLLARLGMSVRDFDTIELNEAFAAQGLAVLRQLGLPDDGANVNPNGGAIAIGHPLGASGA 365 Query: 364 RLVTTALNQLERTGGRYALCTMCIGVGQGIALVIERV 400 RLVTTALNQLE TGGR+ L TMCIGVGQGIAL IERV Sbjct: 366 RLVTTALNQLETTGGRFGLATMCIGVGQGIALAIERV 402 >gb|AAN39378.1| 3-ketoadipyl-CoA thiolase [Azoarcus evansii] Length = 402 Score = 590 bits (1520), Expect = e-166, Method: Composition-based stats. Identities = 310/397 (78%), Positives = 344/397 (86%) Query: 4 FICDAIRTPFGRFGGALSGVRADDLAAAPIRSLMERNPGVDWRCVDDILYGCANQAGEDN 63 +ICDAIRTPFGR+GG LS +RADDLAA PI++L+ RN VDW VDDI+YGCANQAGEDN Sbjct: 6 YICDAIRTPFGRYGGTLSSMRADDLAALPIKALVARNASVDWAAVDDIIYGCANQAGEDN 65 Query: 64 RNVARMAGLLAGLPIEIPGTTLNRLCGSSLDAVGMAARAIKSGEVQLMIAGGVESMTRAP 123 RNVARMA LLAGLP+E+PGTT+NRLCGSSLDA+GM ARAI SGE +LMIAGGVESM+RAP Sbjct: 66 RNVARMAALLAGLPVEVPGTTVNRLCGSSLDALGMVARAIASGETELMIAGGVESMSRAP 125 Query: 124 FVMGKAESAFSRSAAIFDTTIGWRFVNPLMKAQYGIDSMPETAENVATDFNINRADQDAF 183 FV+GKA+SAFSRSA I DTTIGWRFVNPLMKAQYGIDSMPETAENVA +F ++RADQDAF Sbjct: 126 FVLGKADSAFSRSAKIEDTTIGWRFVNPLMKAQYGIDSMPETAENVAQEFGVSRADQDAF 185 Query: 184 ALRSQQRWAAAQEASFFAGEIAPLAIPQKKGDPLIVTTDEHPRPDTTLATLAKLKGVVRP 243 ALRSQQRW+AA E FF EI P+ IP+KKGDP+I + DEHPR DTTL LAKLKGVVRP Sbjct: 186 ALRSQQRWSAANERGFFGREILPVEIPRKKGDPVIFSVDEHPRADTTLEGLAKLKGVVRP 245 Query: 244 DGTVTAGNASGVNDGACALLLASPKAADLYRLKPRARVLGMATAGVAPRIMGFGPAPAAR 303 DG+VTAGNASGVNDGACALLLAS A + L PRAR+LG A AGV PRIMG GPAPA + Sbjct: 246 DGSVTAGNASGVNDGACALLLASEDAVRRHGLTPRARILGSAAAGVPPRIMGIGPAPATQ 305 Query: 304 KVLAQVGLTLAQMDVIELNEAFAAQGLAVTRDLGLPDDAAHVNPNGGAIAIGHPLGASGA 363 K++A++G+ + + D IELNEAFAAQGLAV R LGLPDD HVNPNGGAIAIGHPLGASGA Sbjct: 306 KLIARLGMDIGEFDTIELNEAFAAQGLAVLRQLGLPDDGEHVNPNGGAIAIGHPLGASGA 365 Query: 364 RLVTTALNQLERTGGRYALCTMCIGVGQGIALVIERV 400 RLVTTALNQLE TGGRY L TMCIGVGQGIAL ERV Sbjct: 366 RLVTTALNQLETTGGRYGLATMCIGVGQGIALAFERV 402 >ref|YP_001789881.1| beta-ketoadipyl CoA thiolase [Leptothrix cholodnii SP-6] gb|ACB33116.1| beta-ketoadipyl CoA thiolase [Leptothrix cholodnii SP-6] Length = 400 Score = 582 bits (1501), Expect = e-164, Method: Composition-based stats. Identities = 314/398 (78%), Positives = 349/398 (87%), Gaps = 1/398 (0%) Query: 3 AFICDAIRTPFGRFGGALSGVRADDLAAAPIRSLMERNPGVDWRCVDDILYGCANQAGED 62 A+ICDAIRTPFGR+GGALS VRADDL A PI +LM RNPGVDW + D+LYGCANQAGED Sbjct: 4 AYICDAIRTPFGRYGGALSSVRADDLGAIPIAALMARNPGVDWAQITDVLYGCANQAGED 63 Query: 63 NRNVARMAGLLAGLPIEIPGTTLNRLCGSSLDAVGMAARAIKSGEVQLMIAGGVESMTRA 122 NRNVARM+ LLAGLP+++PG+T+NRLCGS +DA+G AARAIK+GE LMIAGGVESM+RA Sbjct: 64 NRNVARMSALLAGLPLDVPGSTINRLCGSGMDAIGSAARAIKAGEAGLMIAGGVESMSRA 123 Query: 123 PFVMGKAESAFSRSAAIFDTTIGWRFVNPLMKAQYGIDSMPETAENVATDFNINRADQDA 182 PFVM KAESAFSRS A++DTTIGWRFVN LMKAQYG+DSMPETAENVATDF I+RA QD Sbjct: 124 PFVMPKAESAFSRSNAVYDTTIGWRFVNKLMKAQYGVDSMPETAENVATDFGIDRASQDR 183 Query: 183 FALRSQQRWAAAQEASFFAGEIAPLAIPQKKGDPLIVTTDEHPRPDTTLATLAKLKGVVR 242 AL SQ + AAQ++ FF EI P+ IPQKKGDP++V+ DEHPR +T+L +LAKLKGVVR Sbjct: 184 MALASQLKAVAAQKSGFFDAEICPVTIPQKKGDPIVVSKDEHPR-ETSLESLAKLKGVVR 242 Query: 243 PDGTVTAGNASGVNDGACALLLASPKAADLYRLKPRARVLGMATAGVAPRIMGFGPAPAA 302 PDG+VTAGNASGVNDGACALLLAS AA L L PRARV+GMATAGVAPRIMGFGPAPA Sbjct: 243 PDGSVTAGNASGVNDGACALLLASDTAAALNGLTPRARVVGMATAGVAPRIMGFGPAPAT 302 Query: 303 RKVLAQVGLTLAQMDVIELNEAFAAQGLAVTRDLGLPDDAAHVNPNGGAIAIGHPLGASG 362 RKVLA GL L QMDVIELNEAFAAQGLAV RDLGL DD A VNPNGGAIA+GHPLGASG Sbjct: 303 RKVLALTGLRLDQMDVIELNEAFAAQGLAVLRDLGLADDDARVNPNGGAIALGHPLGASG 362 Query: 363 ARLVTTALNQLERTGGRYALCTMCIGVGQGIALVIERV 400 ARLVTTA+NQL R GGRYALCTMCIGVGQGIAL++ERV Sbjct: 363 ARLVTTAINQLHRIGGRYALCTMCIGVGQGIALIVERV 400