BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.5267.p         (113 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003777511.1| phenylacetic acid degradation protein [Herba...   200   4e-50
ref|ZP_06686626.1| phenylacetic acid degradation protein PaaD [A...   165   2e-39
gb|EFV83489.1| phenylacetic acid degradation protein [Achromobac...   164   3e-39
ref|YP_003977821.1| phenylacetic acid degradation protein PaaD [...   164   6e-39
gb|EGP44978.1| phenylacetic acid degradation protein [Achromobac...   164   6e-39

>ref|YP_003777511.1| phenylacetic acid degradation protein [Herbaspirillum seropedicae
           SmR1]
 gb|ADJ65603.1| phenylacetic acid degradation protein [Herbaspirillum seropedicae
           SmR1]
          Length = 158

 Score =  200 bits (509), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 102/109 (93%), Positives = 106/109 (97%)

Query: 1   MSMLVRSDMLNGHATCHGGFIFALADSSFAFACNSRNLNTVASGCSIEYVAPALRNDVLT 60
           MSMLVRSDMLNGHATCHGGFIFALADS+FAFACNSRNLNTVASGCSIEYVAPALRND+L 
Sbjct: 50  MSMLVRSDMLNGHATCHGGFIFALADSTFAFACNSRNLNTVASGCSIEYVAPALRNDMLI 109

Query: 61  AEAQERTLAGRTGVYDITVSNQDGKIIALFRGKSYRIKGEVISGLPAAQ 109
           AEAQER+LAGRTGVYDITVSNQDGK IALFRGKSYRI+GEVISGL AAQ
Sbjct: 110 AEAQERSLAGRTGVYDITVSNQDGKTIALFRGKSYRIRGEVISGLQAAQ 158


>ref|ZP_06686626.1| phenylacetic acid degradation protein PaaD [Achromobacter
           piechaudii ATCC 43553]
 gb|EFF76516.1| phenylacetic acid degradation protein PaaD [Achromobacter
           piechaudii ATCC 43553]
          Length = 157

 Score =  165 bits (417), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 77/107 (71%), Positives = 98/107 (91%), Gaps = 1/107 (0%)

Query: 1   MSMLVRSDMLNGHATCHGGFIFALADSSFAFACNSRNLNTVASGCSIEYVAPALRNDVLT 60
           ++M VR+DMLNGH TCHGGFIFALADS+FAF+CNSRN++TVASGC+I+Y+AP    D+LT
Sbjct: 50  LTMRVRADMLNGHKTCHGGFIFALADSAFAFSCNSRNVSTVASGCTIDYLAPGFEGDLLT 109

Query: 61  AEAQERTLAGRTGVYDITVSNQDGKIIALFRGKSYRIKGEVISGLPA 107
           A AQER+LAGRTGVYD+TV+NQDG+ +ALFRG+SYRIKG+++ G+PA
Sbjct: 110 AVAQERSLAGRTGVYDVTVTNQDGRNVALFRGRSYRIKGQIV-GVPA 155


>gb|EFV83489.1| phenylacetic acid degradation protein [Achromobacter xylosoxidans
           C54]
          Length = 158

 Score =  164 bits (416), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 78/107 (72%), Positives = 96/107 (89%), Gaps = 1/107 (0%)

Query: 1   MSMLVRSDMLNGHATCHGGFIFALADSSFAFACNSRNLNTVASGCSIEYVAPALRNDVLT 60
           +SM VR DMLNGH TCHGGFIFALADS+FAF+CNSRN++TVASGC+I+Y+AP    D+LT
Sbjct: 51  LSMRVRPDMLNGHKTCHGGFIFALADSAFAFSCNSRNVSTVASGCTIDYLAPGFEGDLLT 110

Query: 61  AEAQERTLAGRTGVYDITVSNQDGKIIALFRGKSYRIKGEVISGLPA 107
           A AQER+LAGRTGVYD+TV+NQDG+ +ALFRG+SYRIKG+++ G PA
Sbjct: 111 AVAQERSLAGRTGVYDVTVTNQDGRNVALFRGRSYRIKGQIV-GTPA 156


>ref|YP_003977821.1| phenylacetic acid degradation protein PaaD [Achromobacter
           xylosoxidans A8]
 gb|ADP15106.1| phenylacetic acid degradation protein PaaD [Achromobacter
           xylosoxidans A8]
          Length = 156

 Score =  164 bits (414), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 77/107 (71%), Positives = 98/107 (91%), Gaps = 1/107 (0%)

Query: 1   MSMLVRSDMLNGHATCHGGFIFALADSSFAFACNSRNLNTVASGCSIEYVAPALRNDVLT 60
           ++M VR+DMLNGH TCHGGFIFALADS+FAF+CNSRN++TVASGC+I+Y+AP    D+LT
Sbjct: 49  LTMRVRADMLNGHKTCHGGFIFALADSAFAFSCNSRNVSTVASGCTIDYLAPGFEGDLLT 108

Query: 61  AEAQERTLAGRTGVYDITVSNQDGKIIALFRGKSYRIKGEVISGLPA 107
           A AQER+LAGRTGVYD+TV+NQDG+ +ALFRG+SYRIKG+++ G+PA
Sbjct: 109 AVAQERSLAGRTGVYDVTVTNQDGRNVALFRGRSYRIKGQIV-GVPA 154


>gb|EGP44978.1| phenylacetic acid degradation protein [Achromobacter xylosoxidans
           AXX-A]
          Length = 157

 Score =  164 bits (414), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 76/107 (71%), Positives = 96/107 (89%), Gaps = 1/107 (0%)

Query: 1   MSMLVRSDMLNGHATCHGGFIFALADSSFAFACNSRNLNTVASGCSIEYVAPALRNDVLT 60
           ++M VR DMLNGH TCHGGFIFALADS+FAF+CNSRN++TVASGC+I+Y+AP    D+LT
Sbjct: 50  LTMRVRPDMLNGHKTCHGGFIFALADSAFAFSCNSRNVSTVASGCTIDYLAPGFEGDLLT 109

Query: 61  AEAQERTLAGRTGVYDITVSNQDGKIIALFRGKSYRIKGEVISGLPA 107
           A AQER+LAGRTGVYD+T++NQDG+ +ALFRG+SYRIKG+++ G PA
Sbjct: 110 AVAQERSLAGRTGVYDVTITNQDGRNVALFRGRSYRIKGQIV-GTPA 155