BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.5264.p         (165 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_004754067.1| hypothetical protein CFU_3420 [Collimonas fu...    62   2e-08
ref|YP_001354631.1| virulence protein [Janthinobacterium sp. Mar...    60   1e-07
ref|YP_981588.1| hypothetical protein Pnap_1352 [Polaromonas nap...    57   1e-06
ref|YP_003775380.1| hypothetical protein Hsero_1968 [Herbaspiril...    55   5e-06

>ref|YP_004754067.1| hypothetical protein CFU_3420 [Collimonas fungivorans Ter331]
 gb|AEK63244.1| hypothetical protein; putative signal peptide [Collimonas
           fungivorans Ter331]
          Length = 154

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/50 (64%), Positives = 34/50 (68%)

Query: 79  PAYVAPQPVYVQPAPVYAPPPPVYVRPAPVYYAPAPVYVEREYYHRGHHR 128
           P Y  PQP Y QPAPVY  P PVY RP PVYY PAPVYVE   Y+R  +R
Sbjct: 99  PVYYRPQPTYYQPAPVYYRPAPVYYRPQPVYYRPAPVYVENRDYYRQQYR 148


>ref|YP_001354631.1| virulence protein [Janthinobacterium sp. Marseille]
 gb|ABR91481.1| virulence protein [Janthinobacterium sp. Marseille]
          Length = 109

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/63 (57%), Positives = 41/63 (65%)

Query: 70  LDEEGNIGVPAYVAPQPVYVQPAPVYAPPPPVYVRPAPVYYAPAPVYVEREYYHRGHHRH 129
           +D + NIGVP Y AP PVYVQP PVY  P PVYV+P PVY  P P Y +R Y HR H+  
Sbjct: 28  VDVDLNIGVPVYGAPAPVYVQPQPVYVQPRPVYVQPRPVYVHPRPYYGDRHYRHRHHYDR 87

Query: 130 WHR 132
             R
Sbjct: 88  HDR 90


>ref|YP_981588.1| hypothetical protein Pnap_1352 [Polaromonas naphthalenivorans CJ2]
 gb|ABM36667.1| conserved hypothetical protein [Polaromonas naphthalenivorans CJ2]
          Length = 150

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/42 (71%), Positives = 31/42 (73%)

Query: 79  PAYVAPQPVYVQPAPVYAPPPPVYVRPAPVYYAPAPVYVERE 120
           P YV PQPVYVQPAPVY  P PVYVRP PVY  P PVY+  E
Sbjct: 59  PVYVQPQPVYVQPAPVYVQPRPVYVRPRPVYVQPQPVYLAPE 100


>ref|YP_003775380.1| hypothetical protein Hsero_1968 [Herbaspirillum seropedicae SmR1]
 gb|ADJ63472.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 146

 Score = 54.7 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 45/51 (88%), Positives = 47/51 (92%), Gaps = 2/51 (3%)

Query: 75  NIGVPA-YVAPQPVYVQPAPVYAPPPPVYVRPAPVYYA-PAPVYVEREYYH 123
           NIGVP  YVAPQPVYVQPAPVYAPPPPVYVRPAPVYY  PAPVYVER+YY+
Sbjct: 76  NIGVPGAYVAPQPVYVQPAPVYAPPPPVYVRPAPVYYVNPAPVYVERDYYY 126