BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5263.p (342 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_07675705.1| type I restriction enzyme, S subunit [Ralston... 483 e-134 gb|EGH44533.1| hypothetical protein PSYPI_19973 [Pseudomonas syr... 477 e-132 ref|YP_112811.1| hypothetical protein MCA0277 [Methylococcus cap... 457 e-126 ref|YP_388352.1| restriction modification system DNA specificity... 303 3e-80 ref|ZP_05706081.1| type I restriction-modification system specif... 223 5e-56 >ref|ZP_07675705.1| type I restriction enzyme, S subunit [Ralstonia sp. 5_7_47FAA] ref|YP_004387941.1| hypothetical protein Alide2_2050 [Alicycliphilus denitrificans K601] gb|EFP65927.1| type I restriction enzyme, S subunit [Ralstonia sp. 5_7_47FAA] gb|AEB84425.1| hypothetical protein Alide2_2050 [Alicycliphilus denitrificans K601] Length = 474 Score = 483 bits (1243), Expect = e-134, Method: Composition-based stats. Identities = 243/295 (82%), Positives = 266/295 (90%) Query: 48 GRDADIALFIKSKRELIKLLTERKLRIIDQAVTQGLAPTASLRPSGIQWLGEVPEHWEVV 107 +DA IA FI+ KR+LIKLLTE+KLRIID AVT GL + +L+PSGI+WLGEVPEHWEV Sbjct: 180 AQDAHIARFIQVKRDLIKLLTEQKLRIIDHAVTHGLDASVTLKPSGIEWLGEVPEHWEVA 239 Query: 108 FIKHVADVRFSGVDKHSHEHETPVRLCNYTDVYKNDRITGDMDLMRATATRAELSRLTLK 167 FIKH+ADVRFSGVDKHSH+HETPVRLCNYTDVYKNDRITGDMDLMRATAT AE++RLTLK Sbjct: 240 FIKHIADVRFSGVDKHSHDHETPVRLCNYTDVYKNDRITGDMDLMRATATEAEIARLTLK 299 Query: 168 AGDVILTKDSETADDIGVPAWVPADLPGVVCAYHLCLLRPQPDRVLGEFLFRAISSARTA 227 AGDVILTKDSET DDIGVPAWVP DLPGVVCAYHL LLRP P+RVLGEFLFRAI SARTA Sbjct: 300 AGDVILTKDSETPDDIGVPAWVPEDLPGVVCAYHLGLLRPVPNRVLGEFLFRAIGSARTA 359 Query: 228 QQFHVLATGVTRFALSKHDVKNAVIALPPVEDQRAICRWITDECQPLDDAIARTEDQIKL 287 QQFHVLATGVTRFAL KHDVKNAV+ALPPVE+Q++ICRWIT+ECQPLDDAIARTE++IKL Sbjct: 360 QQFHVLATGVTRFALGKHDVKNAVVALPPVEEQQSICRWITNECQPLDDAIARTEEEIKL 419 Query: 288 VREYRDRLIADVVTGQVDVSGWQSGKLDMLDDAALAALSDSQEDTLEGEVIDGED 342 +REYRDRLIADVVTGQVDV GWQ D++DDAALAAL D QED E E DGED Sbjct: 420 IREYRDRLIADVVTGQVDVRGWQPDPDDVVDDAALAALGDDQEDVTEEEDGDGED 474 >gb|EGH44533.1| hypothetical protein PSYPI_19973 [Pseudomonas syringae pv. pisi str. 1704B] Length = 472 Score = 477 bits (1227), Expect = e-132, Method: Composition-based stats. Identities = 235/295 (79%), Positives = 263/295 (89%), Gaps = 1/295 (0%) Query: 48 GRDADIALFIKSKRELIKLLTERKLRIIDQAVTQGLAPTASLRPSGIQWLGEVPEHWEVV 107 +DA IA FIK+KR+LIKL+TE+KL IID AVT GL + +L+PS ++WLGEVP+HWEV Sbjct: 179 AQDAHIARFIKTKRDLIKLITEQKLHIIDHAVTGGLDASVALKPSDVEWLGEVPKHWEVA 238 Query: 108 FIKHVADVRFSGVDKHSHEHETPVRLCNYTDVYKNDRITGDMDLMRATATRAELSRLTLK 167 FIKH+A+V FSGVDKHSH+ ETPVRLCNYTDVYKNDRIT DM+LMRATAT AE++RLTLK Sbjct: 239 FIKHIANVHFSGVDKHSHDDETPVRLCNYTDVYKNDRITDDMNLMRATATAAEIARLTLK 298 Query: 168 AGDVILTKDSETADDIGVPAWVPADLPGVVCAYHLCLLRPQPDRVLGEFLFRAISSARTA 227 AGDVILTKDSET DDIGVPAWVP DLPGVVCAYHL LLRP PDRVLGEFLFRAI SARTA Sbjct: 299 AGDVILTKDSETPDDIGVPAWVPEDLPGVVCAYHLGLLRPVPDRVLGEFLFRAIGSARTA 358 Query: 228 QQFHVLATGVTRFALSKHDVKNAVIALPPVEDQRAICRWITDECQPLDDAIARTEDQIKL 287 QQFH+LATGVTRFAL KHDVKNAVIALPPVE+Q+AICRWITDEC+PL+D IARTED+IKL Sbjct: 359 QQFHILATGVTRFALGKHDVKNAVIALPPVEEQQAICRWITDECRPLNDVIARTEDEIKL 418 Query: 288 VREYRDRLIADVVTGQVDVSGWQSGKLDMLDDAALAALSDSQEDTLEGEVIDGED 342 +REYRDRLIADVVTGQVDV GWQ G D++DDAALAAL D QED ++ E DGED Sbjct: 419 IREYRDRLIADVVTGQVDVRGWQPGSDDVMDDAALAALGDDQEDVIK-EDGDGED 472 >ref|YP_112811.1| hypothetical protein MCA0277 [Methylococcus capsulatus str. Bath] gb|AAU90501.1| conserved hypothetical protein [Methylococcus capsulatus str. Bath] Length = 474 Score = 457 bits (1175), Expect = e-126, Method: Composition-based stats. Identities = 224/289 (77%), Positives = 251/289 (86%) Query: 48 GRDADIALFIKSKRELIKLLTERKLRIIDQAVTQGLAPTASLRPSGIQWLGEVPEHWEVV 107 +DA IA +I +KRELIKLLTE+KL IID AVT+GL P L+PSGIQWLGEVPEHWEV Sbjct: 180 AQDAHIARYILAKRELIKLLTEQKLTIIDHAVTRGLDPNVRLKPSGIQWLGEVPEHWEVA 239 Query: 108 FIKHVADVRFSGVDKHSHEHETPVRLCNYTDVYKNDRITGDMDLMRATATRAELSRLTLK 167 IKH+ADVRFSGVDKHS++ ETPVRLCNYTDVYKN+RIT DMDLMRATAT AE++RLTLK Sbjct: 240 SIKHIADVRFSGVDKHSNDDETPVRLCNYTDVYKNERITADMDLMRATATAAEIARLTLK 299 Query: 168 AGDVILTKDSETADDIGVPAWVPADLPGVVCAYHLCLLRPQPDRVLGEFLFRAISSARTA 227 AGDVILTKDSET DDIGVPAWVP DLPGVVCAYHL LLRP P RVLGEFLFR+I S RTA Sbjct: 300 AGDVILTKDSETPDDIGVPAWVPEDLPGVVCAYHLGLLRPVPQRVLGEFLFRSIGSTRTA 359 Query: 228 QQFHVLATGVTRFALSKHDVKNAVIALPPVEDQRAICRWITDECQPLDDAIARTEDQIKL 287 QQFHVLATGVTRFAL KHDVKNA+IALPPVE+Q+AICRWI +ECQPLD+AIAR E++I+L Sbjct: 360 QQFHVLATGVTRFALGKHDVKNAIIALPPVEEQQAICRWIVEECQPLDEAIARAEEEIQL 419 Query: 288 VREYRDRLIADVVTGQVDVSGWQSGKLDMLDDAALAALSDSQEDTLEGE 336 +REYRDRLIADVVTGQ+DV GW+ G D++ D LAAL D + D E E Sbjct: 420 IREYRDRLIADVVTGQIDVRGWRPGPDDVVSDEELAALGDDEADLGEDE 468 >ref|YP_388352.1| restriction modification system DNA specificity domain-containing protein [Desulfovibrio alaskensis G20] gb|ABB38657.1| restriction modification system DNA specificity domain-containing protein [Desulfovibrio alaskensis G20] Length = 474 Score = 303 bits (776), Expect = 3e-80, Method: Composition-based stats. Identities = 154/287 (53%), Positives = 204/287 (71%), Gaps = 7/287 (2%) Query: 56 FIKSKRELIKLLTERKLRIIDQAVTQGLAPTASLRPSGIQWLGEVPEHWEVVFIKHVADV 115 FI++KR I+LL E+K +I+QAVT+GL P +PSG++W+G++PEHW+ ++ +A V Sbjct: 187 FIRNKRRFIELLKEQKQNVINQAVTRGLDPKVQFKPSGVEWIGDIPEHWDARRLRTLAAV 246 Query: 116 RFSGVDKHSHEHETPVRLCNYTDVYKNDRITGDMDLMRATATRAELSRLTLKAGDVILTK 175 R SGVDK+++E E PV LCNY DVYKNDRIT +D M+ATAT E+ LKAGDVI+TK Sbjct: 247 RASGVDKNTNEDEVPVMLCNYVDVYKNDRITAAIDFMKATATPEEIRAFELKAGDVIITK 306 Query: 176 DSETADDIGVPAWVPADLPGVVCAYHLCLLRPQPDRVLGEFLFRAISSARTAQQFHVLAT 235 DSE+ DDI +P +VP +PGVVCAYHL L+RP + GEFLFRA SS A QF + AT Sbjct: 307 DSESWDDIAIPTFVPETIPGVVCAYHLALIRPFSGEIEGEFLFRAFSSDPVADQFRIAAT 366 Query: 236 GVTRFALSKHDVKNAVIALPPVEDQRAICRWITDECQPLDDAIARTEDQIKLVREYRDRL 295 GVTRF L++ +K A LPP+E+QRAI I ++C + AI+R E +I+L+REYR RL Sbjct: 367 GVTRFGLAQGAIKGAFFPLPPLEEQRAIIAHINEKCAEISQAISRAEREIELMREYRTRL 426 Query: 296 IADVVTGQVDVSGWQSGKLDMLDDAALAALSDSQEDTLEG-EVIDGE 341 I+DVVTGQVDV G + + + D L AL +EDT + +VID E Sbjct: 427 ISDVVTGQVDVRGIE---VPEVADEELLAL---EEDTADADDVIDDE 467 >ref|ZP_05706081.1| type I restriction-modification system specificity determinant [Cardiobacterium hominis ATCC 15826] gb|EEV87722.1| type I restriction-modification system specificity determinant [Cardiobacterium hominis ATCC 15826] Length = 465 Score = 223 bits (567), Expect = 5e-56, Method: Composition-based stats. Identities = 125/283 (44%), Positives = 179/283 (63%), Gaps = 15/283 (5%) Query: 48 GRDADIALFIKSKRELIKLLTERKLRIIDQAVTQGLAPTASLRPSGIQWLGEVPEHWEVV 107 +DA IA FIK+KR+LIKLLTE+KLRIID AVT+GL + +LRPSGI+WLGEVPEHWEV Sbjct: 176 AQDAYIARFIKAKRDLIKLLTEQKLRIIDHAVTRGLDSSVALRPSGIEWLGEVPEHWEVQ 235 Query: 108 FIKHVADVRF-----SGVDKHSHEHETPVRLCNYTDVYKNDRITGDMDLMRATATRAELS 162 +K+VA++ + + + +R N + + R D+ +AE++ Sbjct: 236 RLKNVANMVLGKMLTTEAKAGDGDFKPYLRSTNVQWIKPDVR-----DVKEMWVAKAEMA 290 Query: 163 RLTLKAGDVILTKDSETADDIGVPAWVPADLPGVVCAYHLCLLRPQPDRVLGEFLFRAIS 222 +L ++ GD+++++ E +G +LP + + +P +L EFLF Sbjct: 291 QLRIRKGDLLVSEGGE----VGRACMWNDELPECYIQNSVHRVAAKP-MMLPEFLFHQFF 345 Query: 223 SARTAQQFHVLATGVTRFALSKHDVKNAVIALPPVEDQRAICRWITDECQPLDDAIARTE 282 + +F+ + V+ L++ + +PP+E+Q+AICRWIT+ECQPLDDAIAR E Sbjct: 346 TYGKRGRFNAIVNRVSIAHLTREKLVTVPFTVPPIEEQKAICRWITEECQPLDDAIARAE 405 Query: 283 DQIKLVREYRDRLIADVVTGQVDVSGWQSGKLDMLDDAALAAL 325 ++IKL+REYRDRLIADVVTGQVDV GWQ G DM+DDA L+AL Sbjct: 406 EEIKLIREYRDRLIADVVTGQVDVRGWQPGPDDMVDDALLSAL 448