BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.5236.p         (66 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003777430.1| periplasmic trypsin-like serine protease [He...   124   4e-27
ref|ZP_08273732.1| Outer membrane stress sensor protease DegS [O...    77   1e-12
ref|ZP_02375400.1| serine protease [Burkholderia thailandensis T...    73   2e-11
ref|ZP_02389272.1| serine protease [Burkholderia thailandensis B...    72   2e-11
ref|YP_443483.1| serine protease [Burkholderia thailandensis E26...    71   4e-11

>ref|YP_003777430.1| periplasmic trypsin-like serine protease [Herbaspirillum
           seropedicae SmR1]
 gb|ADJ65522.1| periplasmic trypsin-like serine protease protein [Herbaspirillum
           seropedicae SmR1]
          Length = 393

 Score =  124 bits (311), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 64/66 (96%), Positives = 66/66 (100%)

Query: 1   MRPGDILVSIDDKPVADTTEMLNVIAQLTPGQQIAMTVLRKAQETKLNITVGKRPPPPKN 60
           MRPGDILVSIDDKPVADTTEMLNVIAQLTPGQQIAMTVLRK+QETKLNITVGKRPPPPKN
Sbjct: 328 MRPGDILVSIDDKPVADTTEMLNVIAQLTPGQQIAMTVLRKSQETKLNITVGKRPPPPKN 387

Query: 61  DDADEE 66
           +DADEE
Sbjct: 388 EDADEE 393


>ref|ZP_08273732.1| Outer membrane stress sensor protease DegS [Oxalobacteraceae
           bacterium IMCC9480]
 gb|EGF32810.1| Outer membrane stress sensor protease DegS [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 322

 Score = 76.6 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/55 (70%), Positives = 45/55 (81%)

Query: 1   MRPGDILVSIDDKPVADTTEMLNVIAQLTPGQQIAMTVLRKAQETKLNITVGKRP 55
           MRPGDILV+++ KPV DTTEMLN+IAQL PG +  MTV RK QET L +TVGKRP
Sbjct: 258 MRPGDILVAVEGKPVTDTTEMLNLIAQLKPGVKAKMTVQRKLQETTLEVTVGKRP 312


>ref|ZP_02375400.1| serine protease [Burkholderia thailandensis TXDOH]
          Length = 401

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/70 (50%), Positives = 52/70 (74%), Gaps = 4/70 (5%)

Query: 1   MRPGDILVSIDDKPVADTTEMLNVIAQLTPGQQIAMTVLRKAQETKLNITVGKRPPPPK- 59
           ++PGDILVSIDD+ + DTT++LNV+AQ+ PG    + V+RK +E  + + +GKRPPPPK 
Sbjct: 332 IKPGDILVSIDDEEITDTTKLLNVVAQIKPGTPAKVHVVRKGKEFDMTVVIGKRPPPPKQ 391

Query: 60  ---NDDADEE 66
              + ++DEE
Sbjct: 392 ALDDQNSDEE 401


>ref|ZP_02389272.1| serine protease [Burkholderia thailandensis Bt4]
 ref|ZP_05585994.1| protease DegQ [Burkholderia thailandensis E264]
          Length = 401

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/70 (50%), Positives = 52/70 (74%), Gaps = 4/70 (5%)

Query: 1   MRPGDILVSIDDKPVADTTEMLNVIAQLTPGQQIAMTVLRKAQETKLNITVGKRPPPPK- 59
           ++PGDILVSIDD+ + DTT++LNV+AQ+ PG    + V+RK +E  + + +GKRPPPPK 
Sbjct: 332 IKPGDILVSIDDEEITDTTKLLNVVAQIKPGTPAKVHVVRKGKEFDVTVVIGKRPPPPKQ 391

Query: 60  ---NDDADEE 66
              + ++DEE
Sbjct: 392 ALDDQNSDEE 401


>ref|YP_443483.1| serine protease [Burkholderia thailandensis E264]
 gb|ABC38240.1| serine protease [Burkholderia thailandensis E264]
          Length = 387

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 35/70 (50%), Positives = 52/70 (74%), Gaps = 4/70 (5%)

Query: 1   MRPGDILVSIDDKPVADTTEMLNVIAQLTPGQQIAMTVLRKAQETKLNITVGKRPPPPK- 59
           ++PGDILVSIDD+ + DTT++LNV+AQ+ PG    + V+RK +E  + + +GKRPPPPK 
Sbjct: 318 IKPGDILVSIDDEEITDTTKLLNVVAQIKPGTPAKVHVVRKGKEFDVTVVIGKRPPPPKQ 377

Query: 60  ---NDDADEE 66
              + ++DEE
Sbjct: 378 ALDDQNSDEE 387