BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5231.p (468 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777426.1| cytochrome b subunit transmembrane protein [... 849 0.0 ref|YP_004751319.1| Ubiquinol--cytochrome c reductase, cytochrom... 767 0.0 ref|YP_001354960.1| cytochrome b [Janthinobacterium sp. Marseill... 765 0.0 ref|YP_001101281.1| cytochrome b [Herminiimonas arsenicoxydans] ... 744 0.0 ref|ZP_08273729.1| Ubiquinol-cytochrome c reductase, cytochrome ... 720 0.0 >ref|YP_003777426.1| cytochrome b subunit transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ65518.1| cytochrome b subunit transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 468 Score = 849 bits (2193), Expect = 0.0, Method: Composition-based stats. Identities = 452/468 (96%), Positives = 459/468 (98%) Query: 1 MGAFHEKKLPDDAPVAAKALNWVDSRFPLTATWKAHLSEYYAPKNFNFWYIFGSLALLVL 60 MGAFHEKKLPDDAPV+AKALNWVDSRFPLTATWKAHLSEYYAPKNFNFWYIFGSLALLVL Sbjct: 1 MGAFHEKKLPDDAPVSAKALNWVDSRFPLTATWKAHLSEYYAPKNFNFWYIFGSLALLVL 60 Query: 61 VIQIVTGIFLVMHYKPDANLAFASVEYIMRDVPWGWLVRYMHSTGASAFFIVVYLHMVRG 120 VIQIVTGIFLVMHYKPDA LAFASVEYIMRDVPWGWLVRYMHSTGASAFFIVVYLHMVRG Sbjct: 61 VIQIVTGIFLVMHYKPDATLAFASVEYIMRDVPWGWLVRYMHSTGASAFFIVVYLHMVRG 120 Query: 121 LLYGSYRKPRELVWLFGVGIFLCLMGEAFFGYLLPWGQMSYWGAQVIVNLFGAIPFIGPD 180 LLYGSYRKPRELVWLFGVGIFLCLMGEAFFGYLLPWGQMSYWGAQVIVNLFGAIPFIGPD Sbjct: 121 LLYGSYRKPRELVWLFGVGIFLCLMGEAFFGYLLPWGQMSYWGAQVIVNLFGAIPFIGPD 180 Query: 181 LSLLIRGDYVVSDATLNRFFSFHVIAIPLVLIGLVAAHIIALHEVGSNNPDGVEIKEKTD 240 LSL IRGDYVVSDATLNRFFSFHVIAIPLVLIGLV AHIIALHEVGSNNPDGVEIKEKTD Sbjct: 181 LSLWIRGDYVVSDATLNRFFSFHVIAIPLVLIGLVVAHIIALHEVGSNNPDGVEIKEKTD 240 Query: 241 ERGVPLDGVPFHPYYTVHDIFGVSIFLLVFSAVVFFAPEMGGYFLEYNNFIPADSLKTPP 300 E+GVPLDGVPFHPYYTVHDIFGVSIFL+VFSAVVFFAPEMGGYFLEYNNFIPADSLKTPP Sbjct: 241 EKGVPLDGVPFHPYYTVHDIFGVSIFLMVFSAVVFFAPEMGGYFLEYNNFIPADSLKTPP 300 Query: 301 HIAPVWYFTPFYSILRATTADFMGWLIAGVAGYVLLLVFKSRLTAKLKIVAIVIGLAIIA 360 HIAPVWYFTPFYSILRATTADFMGWLIAGVA YV LLVFKSRL++KLKI AIVIGLAII Sbjct: 301 HIAPVWYFTPFYSILRATTADFMGWLIAGVAAYVALLVFKSRLSSKLKIAAIVIGLAIIG 360 Query: 361 GMLVFDAKFWGVVLMGLSVVILGGLPWLDHSQVKSIRYRPSWHKYVYLVFAIAFVILGYL 420 GML+FDAKFWGVVLMGLSVVILGGLPWLD SQVKSIRYRPSWHKYVYLVF IAFVILGYL Sbjct: 361 GMLIFDAKFWGVVLMGLSVVILGGLPWLDKSQVKSIRYRPSWHKYVYLVFGIAFVILGYL 420 Query: 421 GVQPPTAIGTTVSQVCSFIYLGFFLLMPWWSAAGTFKPVPERVVYHPH 468 GVQPPTAIGTTVSQVCSFIYLGFFLLMPWWSAAGTFKPVP+RVVYHPH Sbjct: 421 GVQPPTAIGTTVSQVCSFIYLGFFLLMPWWSAAGTFKPVPDRVVYHPH 468 >ref|YP_004751319.1| Ubiquinol--cytochrome c reductase, cytochrome B subunit [Collimonas fungivorans Ter331] gb|AEK60496.1| Ubiquinol--cytochrome c reductase, cytochrome B subunit [Collimonas fungivorans Ter331] Length = 467 Score = 767 bits (1980), Expect = 0.0, Method: Composition-based stats. Identities = 403/466 (86%), Positives = 434/466 (93%) Query: 3 AFHEKKLPDDAPVAAKALNWVDSRFPLTATWKAHLSEYYAPKNFNFWYIFGSLALLVLVI 62 AFHEK+LP DAP+A KALNW+D+RFP+T+TWKAHLSEYYAPKNFNFWY FGSLALLVLVI Sbjct: 2 AFHEKQLPADAPIADKALNWIDARFPVTSTWKAHLSEYYAPKNFNFWYAFGSLALLVLVI 61 Query: 63 QIVTGIFLVMHYKPDANLAFASVEYIMRDVPWGWLVRYMHSTGASAFFIVVYLHMVRGLL 122 QIVTGIFLVMHYKPDA LAFASVEYIMRDVPWGWLVRYMHSTGASAFFIVVYLHMVRGLL Sbjct: 62 QIVTGIFLVMHYKPDAALAFASVEYIMRDVPWGWLVRYMHSTGASAFFIVVYLHMVRGLL 121 Query: 123 YGSYRKPRELVWLFGVGIFLCLMGEAFFGYLLPWGQMSYWGAQVIVNLFGAIPFIGPDLS 182 YGSYRKPRELVWLFGVGIFLCLMGEAF GYLLPWGQMSYWGAQVIVNLFGAIPFIGPDLS Sbjct: 122 YGSYRKPRELVWLFGVGIFLCLMGEAFMGYLLPWGQMSYWGAQVIVNLFGAIPFIGPDLS 181 Query: 183 LLIRGDYVVSDATLNRFFSFHVIAIPLVLIGLVAAHIIALHEVGSNNPDGVEIKEKTDER 242 L IRGDYVVSDATLNRFFSFHVIAIPLVLIGLV AHIIALHEVGSNNPDGVEIKEK D + Sbjct: 182 LWIRGDYVVSDATLNRFFSFHVIAIPLVLIGLVVAHIIALHEVGSNNPDGVEIKEKLDAK 241 Query: 243 GVPLDGVPFHPYYTVHDIFGVSIFLLVFSAVVFFAPEMGGYFLEYNNFIPADSLKTPPHI 302 GVPLDGVPFHPYY+VHD+ V++FL+VFSAVVFF PEMGGYFLEYNNF+PADSLKTPPHI Sbjct: 242 GVPLDGVPFHPYYSVHDVMAVAVFLIVFSAVVFFGPEMGGYFLEYNNFVPADSLKTPPHI 301 Query: 303 APVWYFTPFYSILRATTADFMGWLIAGVAGYVLLLVFKSRLTAKLKIVAIVIGLAIIAGM 362 APVWYFTP+YSILRA T+DF+ +L GVA +V LL KS L + LKI A+VIGLAII M Sbjct: 302 APVWYFTPYYSILRAVTSDFIVYLQVGVAAFVALLWLKSSLNSMLKIAALVIGLAIIGAM 361 Query: 363 LVFDAKFWGVVLMGLSVVILGGLPWLDHSQVKSIRYRPSWHKYVYLVFAIAFVILGYLGV 422 VFDAKF+GVVLMG+SVVIL GLPWLDHS+VKSIRYRPSWHKY+Y++FAI FV+LGYLGV Sbjct: 362 FVFDAKFFGVVLMGVSVVILAGLPWLDHSKVKSIRYRPSWHKYIYILFAITFVVLGYLGV 421 Query: 423 QPPTAIGTTVSQVCSFIYLGFFLLMPWWSAAGTFKPVPERVVYHPH 468 QPP+AIG VS+VC+FIY GFFLLMPWWSAAGTFKPVP+RVVYHPH Sbjct: 422 QPPSAIGGLVSKVCTFIYFGFFLLMPWWSAAGTFKPVPDRVVYHPH 467 >ref|YP_001354960.1| cytochrome b [Janthinobacterium sp. Marseille] gb|ABR88802.1| cytochrome b [Janthinobacterium sp. Marseille] Length = 467 Score = 765 bits (1975), Expect = 0.0, Method: Composition-based stats. Identities = 402/466 (86%), Positives = 436/466 (93%) Query: 3 AFHEKKLPDDAPVAAKALNWVDSRFPLTATWKAHLSEYYAPKNFNFWYIFGSLALLVLVI 62 AFHEK+LP DAP+A KALNWVD+RFPL++TWKAHLSEYYAPKNFNF Y+FGSLALLVLVI Sbjct: 2 AFHEKQLPADAPIADKALNWVDARFPLSSTWKAHLSEYYAPKNFNFLYVFGSLALLVLVI 61 Query: 63 QIVTGIFLVMHYKPDANLAFASVEYIMRDVPWGWLVRYMHSTGASAFFIVVYLHMVRGLL 122 QIVTGIFLVMHYKPDANLAFASVEYIMRDVPWGWLVRYMHSTGASAFF+VVY+HM+RGLL Sbjct: 62 QIVTGIFLVMHYKPDANLAFASVEYIMRDVPWGWLVRYMHSTGASAFFVVVYIHMLRGLL 121 Query: 123 YGSYRKPRELVWLFGVGIFLCLMGEAFFGYLLPWGQMSYWGAQVIVNLFGAIPFIGPDLS 182 YGSYRKPRELVWLFGV IFLCLM EAFFGYLLPWGQMSYWGAQVIVNLFGAIPFIGPDLS Sbjct: 122 YGSYRKPRELVWLFGVAIFLCLMAEAFFGYLLPWGQMSYWGAQVIVNLFGAIPFIGPDLS 181 Query: 183 LLIRGDYVVSDATLNRFFSFHVIAIPLVLIGLVAAHIIALHEVGSNNPDGVEIKEKTDER 242 L IRGDYVVSDATLNRFF+FHVIAIPLVLIGLV AHI+ALHEVGS+NPDGVEIKEK DE+ Sbjct: 182 LWIRGDYVVSDATLNRFFAFHVIAIPLVLIGLVVAHIVALHEVGSSNPDGVEIKEKVDEK 241 Query: 243 GVPLDGVPFHPYYTVHDIFGVSIFLLVFSAVVFFAPEMGGYFLEYNNFIPADSLKTPPHI 302 GVPLDG+PFHPYY+VHDIF V+IFL VF+AVVFFAPEMGGYFLEYNNFIPAD LKTPPHI Sbjct: 242 GVPLDGIPFHPYYSVHDIFIVTIFLFVFTAVVFFAPEMGGYFLEYNNFIPADPLKTPPHI 301 Query: 303 APVWYFTPFYSILRATTADFMGWLIAGVAGYVLLLVFKSRLTAKLKIVAIVIGLAIIAGM 362 APVWYFTPFYSILRATT+DFM WL AGVA YV L++ K+RL +K KI A VIGLA IAGM Sbjct: 302 APVWYFTPFYSILRATTSDFMIWLAAGVAAYVALIILKTRLASKFKIAAAVIGLAAIAGM 361 Query: 363 LVFDAKFWGVVLMGLSVVILGGLPWLDHSQVKSIRYRPSWHKYVYLVFAIAFVILGYLGV 422 +FDAKFWGVVLMG+SV+I+ GLPWLD S VKSIRYRPSWHKYVY+VF IAFV+LGYLGV Sbjct: 362 FIFDAKFWGVVLMGVSVMIMFGLPWLDVSPVKSIRYRPSWHKYVYIVFGIAFVVLGYLGV 421 Query: 423 QPPTAIGTTVSQVCSFIYLGFFLLMPWWSAAGTFKPVPERVVYHPH 468 QPPTAIGT ++QV +F+Y GFFLLMPWWSA GTFKPVP+RVV+HPH Sbjct: 422 QPPTAIGTAIAQVGTFVYFGFFLLMPWWSAMGTFKPVPDRVVFHPH 467 >ref|YP_001101281.1| cytochrome b [Herminiimonas arsenicoxydans] emb|CAL63160.1| Cytochrome b [Herminiimonas arsenicoxydans] Length = 467 Score = 744 bits (1922), Expect = 0.0, Method: Composition-based stats. Identities = 393/466 (84%), Positives = 427/466 (91%) Query: 3 AFHEKKLPDDAPVAAKALNWVDSRFPLTATWKAHLSEYYAPKNFNFWYIFGSLALLVLVI 62 AFHEK+LP DAP+A KALNWVD+RFPL+ATWKAHLSEYYAPKNFNF Y+FGSLALLVLVI Sbjct: 2 AFHEKQLPADAPIADKALNWVDARFPLSATWKAHLSEYYAPKNFNFLYVFGSLALLVLVI 61 Query: 63 QIVTGIFLVMHYKPDANLAFASVEYIMRDVPWGWLVRYMHSTGASAFFIVVYLHMVRGLL 122 QIVTGIFLVMHYKPDA LAFASVEYIMRDVPWGWLVRYMHSTGASAFF+VVY+HM+RGLL Sbjct: 62 QIVTGIFLVMHYKPDAALAFASVEYIMRDVPWGWLVRYMHSTGASAFFVVVYIHMLRGLL 121 Query: 123 YGSYRKPRELVWLFGVGIFLCLMGEAFFGYLLPWGQMSYWGAQVIVNLFGAIPFIGPDLS 182 YGSYRKPRELVWLFGVGIFLCLM EAFFGYLLPWGQMSYWGAQVIVNLFGAIPFIGPDLS Sbjct: 122 YGSYRKPRELVWLFGVGIFLCLMAEAFFGYLLPWGQMSYWGAQVIVNLFGAIPFIGPDLS 181 Query: 183 LLIRGDYVVSDATLNRFFSFHVIAIPLVLIGLVAAHIIALHEVGSNNPDGVEIKEKTDER 242 L IRGDYVVSDATLNRFF+FHVIAIPLVLIGLV AHI+ALHEVGS+NPDGVEIKEK D + Sbjct: 182 LWIRGDYVVSDATLNRFFAFHVIAIPLVLIGLVVAHIVALHEVGSSNPDGVEIKEKLDAK 241 Query: 243 GVPLDGVPFHPYYTVHDIFGVSIFLLVFSAVVFFAPEMGGYFLEYNNFIPADSLKTPPHI 302 G+PLDG+PFHPYY+VHDIF V+IFL VF+AVVFFAPEMGGYFLEYNNF+PAD LKTPPHI Sbjct: 242 GIPLDGIPFHPYYSVHDIFIVTIFLFVFTAVVFFAPEMGGYFLEYNNFVPADPLKTPPHI 301 Query: 303 APVWYFTPFYSILRATTADFMGWLIAGVAGYVLLLVFKSRLTAKLKIVAIVIGLAIIAGM 362 APVWYFTPFYSILRA T+DFM WL AGVA YV L++ K+RL +K K+ A VIGL +I M Sbjct: 302 APVWYFTPFYSILRAVTSDFMVWLAAGVAAYVALIILKTRLASKFKVAAAVIGLLVIVTM 361 Query: 363 LVFDAKFWGVVLMGLSVVILGGLPWLDHSQVKSIRYRPSWHKYVYLVFAIAFVILGYLGV 422 V DAKFWGVVLMG+SV+I+ GLPWLD S VKSIRYRP WHKYVY+VF I FV+LGYLGV Sbjct: 362 FVTDAKFWGVVLMGVSVMIMFGLPWLDVSPVKSIRYRPDWHKYVYIVFGIMFVVLGYLGV 421 Query: 423 QPPTAIGTTVSQVCSFIYLGFFLLMPWWSAAGTFKPVPERVVYHPH 468 Q PT IGT VSQ+ +FIY GFFLLMPWWSA GTFKPVP+RVV+HPH Sbjct: 422 QAPTPIGTAVSQIGTFIYFGFFLLMPWWSAMGTFKPVPDRVVFHPH 467 >ref|ZP_08273729.1| Ubiquinol-cytochrome c reductase, cytochrome B subunit [Oxalobacteraceae bacterium IMCC9480] gb|EGF32807.1| Ubiquinol-cytochrome c reductase, cytochrome B subunit [Oxalobacteraceae bacterium IMCC9480] Length = 467 Score = 720 bits (1858), Expect = 0.0, Method: Composition-based stats. Identities = 369/466 (79%), Positives = 414/466 (88%) Query: 3 AFHEKKLPDDAPVAAKALNWVDSRFPLTATWKAHLSEYYAPKNFNFWYIFGSLALLVLVI 62 AFHEKKLP +AP+A KALNWVDSRFPLT W +YYAPKNFN++YIFGSLA+LVLV+ Sbjct: 2 AFHEKKLPANAPMADKALNWVDSRFPLTKLWNDQWGQYYAPKNFNWFYIFGSLAMLVLVM 61 Query: 63 QIVTGIFLVMHYKPDANLAFASVEYIMRDVPWGWLVRYMHSTGASAFFIVVYLHMVRGLL 122 QIVTGIFLVMHYKPDANLAFASVEYIMRDVPWGWLVRYMHSTGASAFFI++YLHM R LL Sbjct: 62 QIVTGIFLVMHYKPDANLAFASVEYIMRDVPWGWLVRYMHSTGASAFFIIIYLHMTRALL 121 Query: 123 YGSYRKPRELVWLFGVGIFLCLMGEAFFGYLLPWGQMSYWGAQVIVNLFGAIPFIGPDLS 182 YGSYRKPREL+WLFGV IFLCLMGEAFFGYLLPWGQMSYWGAQVIVNLFGAIPFIGPDLS Sbjct: 122 YGSYRKPRELIWLFGVAIFLCLMGEAFFGYLLPWGQMSYWGAQVIVNLFGAIPFIGPDLS 181 Query: 183 LLIRGDYVVSDATLNRFFSFHVIAIPLVLIGLVAAHIIALHEVGSNNPDGVEIKEKTDER 242 L IRGDYVVSDATLNRFF+FHVIAIPLVL+GLV +H+IALHEVGSNNPDG+E+K+ Sbjct: 182 LWIRGDYVVSDATLNRFFAFHVIAIPLVLLGLVVSHLIALHEVGSNNPDGIEVKDTLGPD 241 Query: 243 GVPLDGVPFHPYYTVHDIFGVSIFLLVFSAVVFFAPEMGGYFLEYNNFIPADSLKTPPHI 302 G PLD +P HPYY+VHD+FGV+IFL +FSAV+FFAPEMGGYFLEYNNF+PADSLKTPPHI Sbjct: 242 GHPLDAIPSHPYYSVHDLFGVTIFLTIFSAVIFFAPEMGGYFLEYNNFLPADSLKTPPHI 301 Query: 303 APVWYFTPFYSILRATTADFMGWLIAGVAGYVLLLVFKSRLTAKLKIVAIVIGLAIIAGM 362 APVWYFTPFYS+LRATT+ F+ ++ VAGYV LL+ KSRLT K + VIGL IA M Sbjct: 302 APVWYFTPFYSVLRATTSQFLYAMMVAVAGYVALLILKSRLTGLAKAASAVIGLVAIAAM 361 Query: 363 LVFDAKFWGVVLMGLSVVILGGLPWLDHSQVKSIRYRPSWHKYVYLVFAIAFVILGYLGV 422 V DAKF+GVVLMG SV+IL G+PWLDHS+V+SIRYRP+WHKYVY++F I+F+ILGYLGV Sbjct: 362 FVLDAKFFGVVLMGASVLILAGMPWLDHSEVRSIRYRPTWHKYVYILFGISFLILGYLGV 421 Query: 423 QPPTAIGTTVSQVCSFIYLGFFLLMPWWSAAGTFKPVPERVVYHPH 468 PPT T VSQ+C+FIY GFFLLMPWWSAAG FKPVP+RV +HPH Sbjct: 422 LPPTDGRTLVSQICTFIYFGFFLLMPWWSAAGKFKPVPKRVTFHPH 467