BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5227.p (294 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775095.1| hypothetical protein Hsero_1674 [Herbaspiril... 204 2e-50 ref|YP_003774888.1| hypothetical protein Hsero_1464 [Herbaspiril... 177 2e-42 ref|XP_002540334.1| conserved hypothetical protein [Ricinus comm... 160 2e-37 ref|YP_003776310.1| hypothetical protein Hsero_2913 [Herbaspiril... 142 6e-32 ref|YP_368342.1| hypothetical protein Bcep18194_A4101 [Burkholde... 124 2e-26 >ref|YP_003775095.1| hypothetical protein Hsero_1674 [Herbaspirillum seropedicae SmR1] gb|ADJ63187.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 259 Score = 204 bits (518), Expect = 2e-50, Method: Composition-based stats. Identities = 105/252 (41%), Positives = 151/252 (59%), Gaps = 1/252 (0%) Query: 40 MSQLVHITINEPVDTLNKANPGLFTASEHPSGLQFVTAKWEAGKPGTVTLDHGPRSFSMQ 99 M+ V I +N+ L K P F +++P G+QF A W + G+V L + ++ Sbjct: 1 MTAPVEIRVNQSGVDLVKKYPDQFEITKYPQGIQFYAADWGSVPNGSVVLATSAHNVTLP 60 Query: 100 SVLSVTGTASARFAAEHISQWSVNGGLSDAETISHDDARKQFTALLHALSAAGWSKVIPI 159 +LS TG FA+E+I W++N G+++A+ I+HDDARK+F LL +L AGW + I + Sbjct: 61 YILSATGNDDPNFASENIINWNINAGITEADVIAHDDARKRFFGLLQSLRNAGWVRAIRL 120 Query: 160 SRPRLKGEQALAYALK-NPGYPLDPSHDLSLAQWMKLPDGTPWLFYADHVFLEIKLYRDP 218 S PRLKG+QAL Y K NP Y LDP + LSL QWM L W Y+DH +L++ + RDP Sbjct: 121 SEPRLKGKQALDYRQKENPIYSLDPDYVLSLEQWMTLDTRATWSLYSDHAYLDVSITRDP 180 Query: 219 NRLDTDKRGAYFVTYSLTAQDAYLRGYVDDEKLDNWKMEFSKELPALKQARERKEAQLKN 278 ++ D K GAYFV Y+L + + R V K +WK E LP L ++R+ E LK Sbjct: 181 SKTDVTKPGAYFVEYALKSDNEKWRSVVGPTKRLHWKTELPAVLPQLAKSRQAAEETLKK 240 Query: 279 DNVTIDQAYQDP 290 +N+TID+ Y+DP Sbjct: 241 ENITIDETYRDP 252 >ref|YP_003774888.1| hypothetical protein Hsero_1464 [Herbaspirillum seropedicae SmR1] gb|ADJ62980.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 254 Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 96/253 (37%), Positives = 134/253 (52%) Query: 40 MSQLVHITINEPVDTLNKANPGLFTASEHPSGLQFVTAKWEAGKPGTVTLDHGPRSFSMQ 99 M + + IT N+ L P P + F + W GTV + G ++ Sbjct: 1 MPETIEITPNQSGKALLARYPHQIKLLNRPPNVNFYSLDWPRNALGTVQVKTGNHVAVIK 60 Query: 100 SVLSVTGTASARFAAEHISQWSVNGGLSDAETISHDDARKQFTALLHALSAAGWSKVIPI 159 VL ++G+ FA+E I +W V GL+ E I HD AR++F ALL + AGW + + Sbjct: 61 DVLGISGSDDPNFASEDIVEWHVYAGLATEEEIPHDLARQRFLALLQEIRKAGWQRYVGR 120 Query: 160 SRPRLKGEQALAYALKNPGYPLDPSHDLSLAQWMKLPDGTPWLFYADHVFLEIKLYRDPN 219 PRLKG AL YAL + Y LDP + LSL +WM +PD T W F ++ +L + L RDP Sbjct: 121 GHPRLKGSTALRYALSSRTYALDPDYPLSLQEWMSMPDDTMWRFQLENAYLMLTLTRDPQ 180 Query: 220 RLDTDKRGAYFVTYSLTAQDAYLRGYVDDEKLDNWKMEFSKELPALKQARERKEAQLKND 279 R D +K+GAYFV SL + R V + +W+ +EL LKQ RER E L+ Sbjct: 181 RKDVNKKGAYFVKLSLNGANEEARRIVGPARRADWQAALPEELKLLKQDRERAEQVLRQQ 240 Query: 280 NVTIDQAYQDPAV 292 V ID++YQDP + Sbjct: 241 GVAIDESYQDPKL 253 >ref|XP_002540334.1| conserved hypothetical protein [Ricinus communis] gb|EEF22049.1| conserved hypothetical protein [Ricinus communis] Length = 228 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 80/221 (36%), Positives = 127/221 (57%), Gaps = 1/221 (0%) Query: 71 GLQFVTAKWEAGKPGTVTLDHGPRSFSMQSVLSVTGTASARFAAEHISQWSVNGGLSDAE 130 G+ F TA+W PG+VT+ G F++ VL + G +R +AE + Q+ + G++ + Sbjct: 3 GVNFYTAQWAQQSPGSVTIQPGKFQFTIPYVLGLQGVEESRASAEGLVQYEIFAGITGPD 62 Query: 131 TISHDDARKQFTALLHALSAAGWSKVIPISRPRLKGEQALAYALKNP-GYPLDPSHDLSL 189 I HD+AR++F ALL + AGW+ I PR++G Q L Y LK+ LDP ++ +L Sbjct: 63 LIGHDEARQKFFALLQGIRKAGWTPFIDRDDPRIRGRQRLEYVLKSSSASSLDPDYEPTL 122 Query: 190 AQWMKLPDGTPWLFYADHVFLEIKLYRDPNRLDTDKRGAYFVTYSLTAQDAYLRGYVDDE 249 +WM+L D + W FYADH +L + R+ + D DK GAY +TY+L +++ + R YV + Sbjct: 123 TEWMQLEDLSRWTFYADHAYLSVAFKREASLRDPDKPGAYLLTYTLMSENQHFRTYVAPK 182 Query: 250 KLDNWKMEFSKELPALKQARERKEAQLKNDNVTIDQAYQDP 290 D WK L L+ R++ E ++ +ID+ Y DP Sbjct: 183 DRDRWKELLPATLKELQAQRQQAEKAWRSKGASIDEGYVDP 223 >ref|YP_003776310.1| hypothetical protein Hsero_2913 [Herbaspirillum seropedicae SmR1] gb|ADJ64402.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 284 Score = 142 bits (358), Expect = 6e-32, Method: Composition-based stats. Identities = 79/253 (31%), Positives = 122/253 (48%), Gaps = 1/253 (0%) Query: 39 KMSQLVHITINEPVDTLNKANPGLFTASEHPSGLQFVTAKWEAGKPGTVTLDHGPRSFSM 98 +M + I NEP P + P+G+ F +W + G V + HG S + Sbjct: 27 QMPSSIAIRANEPSKAFIDQAPSAIKVIKQPAGINFYLMQWGGAQLGDVHIHHGAASVQI 86 Query: 99 QSVLSVTGTASARFAAEHISQWSVNGGLSDAETISHDDARKQFTALLHALSAAGWSKVIP 158 V + G A+F EHI+ W + GLS +SH+ AR + A+L AL W +I Sbjct: 87 PDVRVLQGEEDAQFPEEHIANWKIYIGLSSGSVMSHEQARNKIYAILAALEKKAWRVLID 146 Query: 159 ISRPRLKGEQALAYAL-KNPGYPLDPSHDLSLAQWMKLPDGTPWLFYADHVFLEIKLYRD 217 PRL G++ Y ++P L+ + +L +WM+L D + W FYAD VFL + + RD Sbjct: 147 PDDPRLTGKERFDYVTGQSPASGLNIDYVPTLDEWMRLEDLSHWSFYADGVFLTVTMQRD 206 Query: 218 PNRLDTDKRGAYFVTYSLTAQDAYLRGYVDDEKLDNWKMEFSKELPALKQARERKEAQLK 277 LD + G Y + +L ++ R +V + NW+ E AL + R ++EAQ Sbjct: 207 QGALDVSRPGHYILVLNLMGENEGFRAFVPPKARTNWRNELPSLWKALNERRTQREAQAL 266 Query: 278 NDNVTIDQAYQDP 290 I+ +YQDP Sbjct: 267 VAGKKINTSYQDP 279 >ref|YP_368342.1| hypothetical protein Bcep18194_A4101 [Burkholderia sp. 383] gb|ABB07698.1| hypothetical protein Bcep18194_A4101 [Burkholderia sp. 383] Length = 294 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 91/263 (34%), Positives = 121/263 (46%), Gaps = 22/263 (8%) Query: 41 SQLVHITINEPVDTLNKANPGLFTASEHPSGLQFVTAKWEAGKPGTVTLDHGPRSFSMQS 100 S L I + +P D+ + PG + HPSG F W G GTV G F + + Sbjct: 39 SSLTVIRLGDPKDS-DLNGPGA-SVDNHPSGTSFYQHDWMRGNLGTVKFMQGTHGFVLDN 96 Query: 101 VLSVTGTASARFAAEHISQWSVNGGLSDAETISHDDARKQFTALLHALSAAGWSKVIPIS 160 VLS G+A I W++N G+S + +H+ A + T L L A GW + I +S Sbjct: 97 VLSAVGSADKDVPG-GIYTWNINFGVSPEQADTHEAALARMTKLFQDLRANGWVRYIDVS 155 Query: 161 RPRLKGEQALAYALKNPGYPLDPSHDLSLAQWMKLPDGTP-WLFYADHVFLEIKLYRDPN 219 PRL G+QA Y Y LD + ++ +W P W+FYAD +LEI L Sbjct: 156 NPRLTGKQAWDYMKTYSIYSLDSGYTPTIEEWKAAVKEMPRWVFYADGAYLEISL----- 210 Query: 220 RLDTDKRGAYFV---TYSLTAQ-----DAYLRGYV--DDEKLDNWKMEFSKELPALKQAR 269 ++K FV TY LTA+ Y GY + EK+ NWK EL R Sbjct: 211 ---SEKNMGGFVGKTTYLLTARIRNEYAFYGLGYFPGNAEKIRNWKTLLPAELQKYHAKR 267 Query: 270 ERKEAQLKNDNVTIDQAYQDPAV 292 EA LK TID AYQDP + Sbjct: 268 IATEAALKGQGYTIDTAYQDPPI 290