BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5224.p (259 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774164.1| transmembrane protein [Herbaspirillum serope... 468 e-130 ref|YP_003777420.1| type IV / VI secretion system transmembrane ... 447 e-124 ref|YP_004750740.1| putative transmembrane protein [Collimonas f... 366 2e-99 ref|ZP_02382918.1| hypothetical protein BuboB_34656 [Burkholderi... 324 8e-87 ref|ZP_02889983.1| conserved hypothetical protein [Burkholderia ... 321 8e-86 >ref|YP_003774164.1| transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ62256.1| transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 263 Score = 468 bits (1205), Expect = e-130, Method: Composition-based stats. Identities = 233/263 (88%), Positives = 244/263 (92%), Gaps = 4/263 (1%) Query: 1 MNMTSAPSLLDQDHLPPAQMAAAP----VNARSLLDLMYDGFYALFMLKNGSAPVDEASF 56 MNMTSAPSLLDQD P + + V A SLLDLMYDGFYALFML+NG+AP+DEASF Sbjct: 1 MNMTSAPSLLDQDSFPSSSPSPTSASAPVKANSLLDLMYDGFYALFMLRNGNAPLDEASF 60 Query: 57 SVKMQKFLGDVERNAKKLDVSPEDVYAAKYAFCASVDEIILRSSFGIRDAWERRPLQLTM 116 ++KMQKFLGDVERNAKKLDVSPEDVYAAKYAFCASVDEIILRS+F IRDAWERRPLQLTM Sbjct: 61 AIKMQKFLGDVERNAKKLDVSPEDVYAAKYAFCASVDEIILRSNFTIRDAWERRPLQLTM 120 Query: 117 FGDQLAGENFFKQLEDLRVRGNAHIQALEVFHMCLLLGFQGKYALEGPEKLNYLTARLGD 176 FGDQLAGENFFKQLEDLRVRGNAH+QALEVFHMCLLLGFQGKYALEGPEKL YLTARLGD Sbjct: 121 FGDQLAGENFFKQLEDLRVRGNAHVQALEVFHMCLLLGFQGKYALEGPEKLGYLTARLGD 180 Query: 177 EIAHLKGKSAGFAPHWARPDAIVNKLRNDVPLWVVASLFAFIALFAYLGLNWMLTSGTEN 236 EIAH+KGKSAGFAPHWARPDAIVNKLRNDVPLW V SLFA IALFAYLGLNWMLTSGTEN Sbjct: 181 EIAHMKGKSAGFAPHWARPDAIVNKLRNDVPLWAVGSLFALIALFAYLGLNWMLTSGTEN 240 Query: 237 GLAGYSDIVKLAPRTANLTITLP 259 GLAGY+DIVKLAPRTANLTITLP Sbjct: 241 GLAGYTDIVKLAPRTANLTITLP 263 >ref|YP_003777420.1| type IV / VI secretion system transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ65512.1| type IV / VI secretion system transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 257 Score = 447 bits (1149), Expect = e-124, Method: Composition-based stats. Identities = 215/257 (83%), Positives = 229/257 (89%) Query: 3 MTSAPSLLDQDHLPPAQMAAAPVNARSLLDLMYDGFYALFMLKNGSAPVDEASFSVKMQK 62 MTS PSLLD L AP+NARSLLDL+YDGFYALFMLKNG PVD+ SF KMQK Sbjct: 1 MTSPPSLLDPTPLQMPVTTGAPINARSLLDLIYDGFYALFMLKNGGTPVDDVSFESKMQK 60 Query: 63 FLGDVERNAKKLDVSPEDVYAAKYAFCASVDEIILRSSFGIRDAWERRPLQLTMFGDQLA 122 FLG+VERNAKK++ SP+D+YAAKYAFCASVDEIILRS FGIR AWERRPLQLTMFGDQLA Sbjct: 61 FLGEVERNAKKINASPDDIYAAKYAFCASVDEIILRSKFGIRPAWERRPLQLTMFGDQLA 120 Query: 123 GENFFKQLEDLRVRGNAHIQALEVFHMCLLLGFQGKYALEGPEKLNYLTARLGDEIAHLK 182 GENFF +LE+LR+ GNAHIQALEVFHMCLLLGFQGKYALEGPEKLNYLTARLGDEIAHLK Sbjct: 121 GENFFHKLEELRLHGNAHIQALEVFHMCLLLGFQGKYALEGPEKLNYLTARLGDEIAHLK 180 Query: 183 GKSAGFAPHWARPDAIVNKLRNDVPLWVVASLFAFIALFAYLGLNWMLTSGTENGLAGYS 242 GKSAGFAPHW RPDA++NKLRNDVPLWVV SLFA I LFAYLG+ WML S TENGLAGYS Sbjct: 181 GKSAGFAPHWERPDAVINKLRNDVPLWVVISLFALITLFAYLGVRWMLISDTENGLAGYS 240 Query: 243 DIVKLAPRTANLTITLP 259 DIVKLAPRTANLTITLP Sbjct: 241 DIVKLAPRTANLTITLP 257 >ref|YP_004750740.1| putative transmembrane protein [Collimonas fungivorans Ter331] gb|AEK59917.1| putative transmembrane protein [Collimonas fungivorans Ter331] Length = 258 Score = 366 bits (939), Expect = 2e-99, Method: Composition-based stats. Identities = 182/259 (70%), Positives = 205/259 (79%), Gaps = 1/259 (0%) Query: 1 MNMTSAPSLLDQDHLPPAQMAAAPVNARSLLDLMYDGFYALFMLKNGSAPVDEASFSVKM 60 MN SAPSLL D +AA +A SLLDLMYDGFYALF+LKN AP DEA F+ KM Sbjct: 1 MNRPSAPSLLG-DSAGGQYVAADTSSANSLLDLMYDGFYALFLLKNRCAPTDEAGFTSKM 59 Query: 61 QKFLGDVERNAKKLDVSPEDVYAAKYAFCASVDEIILRSSFGIRDAWERRPLQLTMFGDQ 120 Q+FL D ER AKKLDVS EDV+AAKYAFCA+VDE IL S F IRD W RRPLQL +FGDQ Sbjct: 60 QRFLSDFERGAKKLDVSAEDVHAAKYAFCAAVDENILHSQFNIRDTWARRPLQLILFGDQ 119 Query: 121 LAGENFFKQLEDLRVRGNAHIQALEVFHMCLLLGFQGKYALEGPEKLNYLTARLGDEIAH 180 LAGE+FF +LEDLR +G H+QALEVFHMCLLLGFQGKY +EGPEKLNYLTARLGDEIA Sbjct: 120 LAGEHFFTRLEDLRAKGAQHLQALEVFHMCLLLGFQGKYIIEGPEKLNYLTARLGDEIAR 179 Query: 181 LKGKSAGFAPHWARPDAIVNKLRNDVPLWVVASLFAFIALFAYLGLNWMLTSGTENGLAG 240 +KGKSAGFAPHW RPD I +KLRN+VPLW + S+FA I L Y LN ML+ T + ++G Sbjct: 180 MKGKSAGFAPHWERPDQISHKLRNEVPLWALCSVFALIGLGGYFALNTMLSRATASSISG 239 Query: 241 YSDIVKLAPRTANLTITLP 259 YSDIVKLAPR + LTITLP Sbjct: 240 YSDIVKLAPRASYLTITLP 258 >ref|ZP_02382918.1| hypothetical protein BuboB_34656 [Burkholderia ubonensis Bu] Length = 259 Score = 324 bits (830), Expect = 8e-87, Method: Composition-based stats. Identities = 155/259 (59%), Positives = 194/259 (74%), Gaps = 2/259 (0%) Query: 3 MTSAPSLLDQDHLPPAQMAA--APVNARSLLDLMYDGFYALFMLKNGSAPVDEASFSVKM 60 M+ APSL + PP A+ + ARSLLDL+YDGFY LF+LKNG P + FS ++ Sbjct: 1 MSYAPSLFGDNAPPPIAPASTDSAFQARSLLDLLYDGFYMLFLLKNGREPESASEFSTRI 60 Query: 61 QKFLGDVERNAKKLDVSPEDVYAAKYAFCASVDEIILRSSFGIRDAWERRPLQLTMFGDQ 120 Q+FL D ER AKKL++S EDVY+AK+AFCA+VDE +L S + IR WERRPLQL +FG+Q Sbjct: 61 QEFLADYERGAKKLNISAEDVYSAKFAFCAAVDETVLSSQYKIRPDWERRPLQLALFGEQ 120 Query: 121 LAGENFFKQLEDLRVRGNAHIQALEVFHMCLLLGFQGKYALEGPEKLNYLTARLGDEIAH 180 LAGE FF+ LED R +G A +Q+LEVFHMCLLLGFQGKY LEGPEKL YLTAR+GDEIAH Sbjct: 121 LAGEKFFQHLEDCRAKGAARLQSLEVFHMCLLLGFQGKYLLEGPEKLAYLTARIGDEIAH 180 Query: 181 LKGKSAGFAPHWARPDAIVNKLRNDVPLWVVASLFAFIALFAYLGLNWMLTSGTENGLAG 240 +KGK A FAPHW PD I ++L+ +VP+W + ++F +AL AYLGLN L T LA Sbjct: 181 MKGKRAPFAPHWTLPDQIAHRLKREVPVWAIGAVFGLVALLAYLGLNTYLKDKTLQALAP 240 Query: 241 YSDIVKLAPRTANLTITLP 259 YS ++K+ P +ANLTI+LP Sbjct: 241 YSQVIKVGPESANLTISLP 259 >ref|ZP_02889983.1| conserved hypothetical protein [Burkholderia ambifaria IOP40-10] ref|YP_001807111.1| hypothetical protein BamMC406_0398 [Burkholderia ambifaria MC40-6] gb|EDT04444.1| conserved hypothetical protein [Burkholderia ambifaria IOP40-10] gb|ACB62895.1| conserved hypothetical protein [Burkholderia ambifaria MC40-6] Length = 260 Score = 321 bits (822), Expect = 8e-86, Method: Composition-based stats. Identities = 156/260 (60%), Positives = 194/260 (74%), Gaps = 3/260 (1%) Query: 3 MTSAPSLLDQDHLPPAQMAA---APVNARSLLDLMYDGFYALFMLKNGSAPVDEASFSVK 59 M+ APSL + P Q A A ARSL+DL+YDGF+ LF+LKNG P + FS K Sbjct: 1 MSYAPSLFGDNTPAPLQTPASTDAAFQARSLVDLLYDGFFMLFLLKNGREPDSASEFSTK 60 Query: 60 MQKFLGDVERNAKKLDVSPEDVYAAKYAFCASVDEIILRSSFGIRDAWERRPLQLTMFGD 119 +Q+FL D ER AKKL+++ EDVYAAK+A+CA+VDE++L S F IR WERRPLQL +FG+ Sbjct: 61 IQEFLSDFERGAKKLNIAAEDVYAAKFAYCAAVDEMVLSSQFKIRTDWERRPLQLVLFGE 120 Query: 120 QLAGENFFKQLEDLRVRGNAHIQALEVFHMCLLLGFQGKYALEGPEKLNYLTARLGDEIA 179 QLAGE FF+ LE+ R +G A +Q+LEVFHMCLLLGFQGKY LEGPEKL YLTARLGDEIA Sbjct: 121 QLAGEKFFQYLEECRAQGAARLQSLEVFHMCLLLGFQGKYLLEGPEKLAYLTARLGDEIA 180 Query: 180 HLKGKSAGFAPHWARPDAIVNKLRNDVPLWVVASLFAFIALFAYLGLNWMLTSGTENGLA 239 H+KGK A FAPHW PD I ++L+ +VP+W + ++FA +AL YLGLN L T LA Sbjct: 181 HMKGKRAPFAPHWPLPDQIAHRLKREVPVWAIGAVFALVALLGYLGLNTYLKDKTLQALA 240 Query: 240 GYSDIVKLAPRTANLTITLP 259 YS +VK+ P +ANLTI+LP Sbjct: 241 PYSQVVKVGPESANLTISLP 260