BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5223.p (303 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777419.1| hypothetical protein Hsero_4040 [Herbaspiril... 553 e-155 ref|YP_003774165.1| hypothetical protein Hsero_0738 [Herbaspiril... 534 e-150 ref|YP_004750739.1| hypothetical protein CFU_0077 [Collimonas fu... 476 e-132 ref|ZP_00946878.1| Hypothetical protein RRSL_00096 [Ralstonia so... 420 e-115 emb|CAQ36647.1| protein of unknown function duf876, bacterial [R... 420 e-115 >ref|YP_003777419.1| hypothetical protein Hsero_4040 [Herbaspirillum seropedicae SmR1] gb|ADJ65511.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 448 Score = 553 bits (1425), Expect = e-155, Method: Composition-based stats. Identities = 284/303 (93%), Positives = 296/303 (97%) Query: 1 MSYLKKAVRLVSENEPRDSLVCIPIVRLRRASSSGFELDPDFVAPSLSVHAAPLLFLRLR 60 +SYLKKAVRL SE+EPRDSLVCIPIVRLRR+SSSGFELDPDFVAPSLSVHAAPLLF RLR Sbjct: 146 LSYLKKAVRLASESEPRDSLVCIPIVRLRRSSSSGFELDPDFVAPSLSVHAAPLLFQRLR 205 Query: 61 RLLDALQAKVSALYGHHREPSKSVVEFRSGDITSFWLLHTASTAYASLSHYLNNPLLHPE 120 RL+DALQAKVSALYGHHREPSK+VVEFRSGDITSFWLLHTASTAYA LSHYLNNPLLHPE Sbjct: 206 RLMDALQAKVSALYGHHREPSKNVVEFRSGDITSFWLLHTASTAYARLSHYLNNPLLHPE 265 Query: 121 RLYEQLLGLAGSLMTFSRSLALADLPPYDHRDPGPPFARLDGIIRELLDTVISSRYFAIA 180 RLYEQLL LAGSLMTFSRSL LADLPPY+HRDPGPPFARLDGIIRELLDTVISSRYFAI Sbjct: 266 RLYEQLLALAGSLMTFSRSLMLADLPPYEHRDPGPPFARLDGIIRELLDTVISSRYFAIV 325 Query: 181 LHESKPSYHMGMLDSGKIDEKTSFYLAVNADLPAIELVDVVPLRFKIGAPEDVEKFVLAA 240 LHESKPSYHMGMLDSGKI+EKT+FYLAVNADLPAIELVDVVPLRFK+GAP+DVEKFVLAA Sbjct: 326 LHESKPSYHMGMLDSGKINEKTNFYLAVNADLPAIELVDVVPLRFKVGAPDDVEKFVLAA 385 Query: 241 LPGVKLVHSPQVPAALPVRPDTYYFTLESKGAMYERMLQAQSICIYVPSGIRDLKLELLA 300 LPGVKLVHSPQVPAALPVRPDTYYFTLESKG MYERMLQAQS+CIYVPSGIR+LKLELLA Sbjct: 386 LPGVKLVHSPQVPAALPVRPDTYYFTLESKGPMYERMLQAQSLCIYVPSGIRELKLELLA 445 Query: 301 VTQ 303 VTQ Sbjct: 446 VTQ 448 >ref|YP_003774165.1| hypothetical protein Hsero_0738 [Herbaspirillum seropedicae SmR1] gb|ADJ62257.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 448 Score = 534 bits (1376), Expect = e-150, Method: Composition-based stats. Identities = 281/303 (92%), Positives = 296/303 (97%) Query: 1 MSYLKKAVRLVSENEPRDSLVCIPIVRLRRASSSGFELDPDFVAPSLSVHAAPLLFLRLR 60 MSYLKKAVRLVSENEPRDSLVCIPIVRLRR++SSGFE+DP+FV PSLSVHAAPLL LRLR Sbjct: 146 MSYLKKAVRLVSENEPRDSLVCIPIVRLRRSNSSGFEMDPNFVPPSLSVHAAPLLLLRLR 205 Query: 61 RLLDALQAKVSALYGHHREPSKSVVEFRSGDITSFWLLHTASTAYASLSHYLNNPLLHPE 120 RL+DALQAKVSALYGHHREPSKSVVEFRSGDITSFWLLHTASTAYASLSHYL+NPLLHPE Sbjct: 206 RLMDALQAKVSALYGHHREPSKSVVEFRSGDITSFWLLHTASTAYASLSHYLHNPLLHPE 265 Query: 121 RLYEQLLGLAGSLMTFSRSLALADLPPYDHRDPGPPFARLDGIIRELLDTVISSRYFAIA 180 RLYEQLL L GSLMTFSRS+ALADLP YDH+DPGP FARLDGIIRELLDTVISSRYFAIA Sbjct: 266 RLYEQLLTLGGSLMTFSRSVALADLPAYDHQDPGPAFARLDGIIRELLDTVISSRYFAIA 325 Query: 181 LHESKPSYHMGMLDSGKIDEKTSFYLAVNADLPAIELVDVVPLRFKIGAPEDVEKFVLAA 240 L+E+KPSYH+GMLDSGKIDEKT+FYLAVNADLPAIELVDVVPLRFKIGAP+DVEKFVLAA Sbjct: 326 LNETKPSYHLGMLDSGKIDEKTNFYLAVNADLPAIELVDVVPLRFKIGAPDDVEKFVLAA 385 Query: 241 LPGVKLVHSPQVPAALPVRPDTYYFTLESKGAMYERMLQAQSICIYVPSGIRDLKLELLA 300 LPGVKLVHSPQVPAALPVRPDTYYF LE+KGAMYERMLQAQSICIYVP+GIRDLKLELLA Sbjct: 386 LPGVKLVHSPQVPAALPVRPDTYYFALENKGAMYERMLQAQSICIYVPAGIRDLKLELLA 445 Query: 301 VTQ 303 VTQ Sbjct: 446 VTQ 448 >ref|YP_004750739.1| hypothetical protein CFU_0077 [Collimonas fungivorans Ter331] gb|AEK59916.1| hypothetical protein CFU_0077 [Collimonas fungivorans Ter331] Length = 452 Score = 476 bits (1224), Expect = e-132, Method: Composition-based stats. Identities = 233/302 (77%), Positives = 276/302 (91%) Query: 1 MSYLKKAVRLVSENEPRDSLVCIPIVRLRRASSSGFELDPDFVAPSLSVHAAPLLFLRLR 60 ++YLKK+VR+VSE EPRDSL+ P+++LRR S+ GFE DP FVAPSL++ +AP L+++LR Sbjct: 150 LTYLKKSVRMVSEVEPRDSLISFPLIKLRRISTGGFEPDPTFVAPSLTIRSAPALYIQLR 209 Query: 61 RLLDALQAKVSALYGHHREPSKSVVEFRSGDITSFWLLHTASTAYASLSHYLNNPLLHPE 120 RL+DALQAKV+ALYGHHREPSK+V+EFRSGDI+SFWLLHTAS+A+A L+HY +NP HPE Sbjct: 210 RLMDALQAKVNALYGHHREPSKNVIEFRSGDISSFWLLHTASSAFAGLTHYFHNPAFHPE 269 Query: 121 RLYEQLLGLAGSLMTFSRSLALADLPPYDHRDPGPPFARLDGIIRELLDTVISSRYFAIA 180 RLYEQLL LAG+LMTFS+S AL+DLP Y H+DPGP FA+LD IIRELLDTVISSRYF+IA Sbjct: 270 RLYEQLLSLAGALMTFSKSYALSDLPVYQHQDPGPCFAKLDSIIRELLDTVISSRYFSIA 329 Query: 181 LHESKPSYHMGMLDSGKIDEKTSFYLAVNADLPAIELVDVVPLRFKIGAPEDVEKFVLAA 240 L E+KPS+H GMLDSGKID+KT+FYLAVNA +PAIELVD+VPLRFKIGAP+DV+KFVL+A Sbjct: 330 LSENKPSHHHGMLDSGKIDDKTAFYLAVNASMPAIELVDIVPLRFKIGAPDDVDKFVLSA 389 Query: 241 LPGVKLVHSPQVPAALPVRPDTYYFTLESKGAMYERMLQAQSICIYVPSGIRDLKLELLA 300 +PGVKL HSPQVPAALPVRPDTYYF LE+KGA+Y+RMLQAQSI IYVPSGI DLKLELLA Sbjct: 390 MPGVKLSHSPQVPAALPVRPDTYYFALENKGALYDRMLQAQSISIYVPSGINDLKLELLA 449 Query: 301 VT 302 VT Sbjct: 450 VT 451 >ref|ZP_00946878.1| Hypothetical protein RRSL_00096 [Ralstonia solanacearum UW551] gb|EAP70637.1| Hypothetical protein RRSL_00096 [Ralstonia solanacearum UW551] Length = 448 Score = 420 bits (1080), Expect = e-115, Method: Composition-based stats. Identities = 201/302 (66%), Positives = 263/302 (87%) Query: 1 MSYLKKAVRLVSENEPRDSLVCIPIVRLRRASSSGFELDPDFVAPSLSVHAAPLLFLRLR 60 ++YLKK+V+LV+E+EPRD + +P+VR+RR S GFELD FVAPSLS++A+P+L+ RLR Sbjct: 146 ITYLKKSVKLVAESEPRDQFISLPVVRVRRTGSGGFELDDTFVAPSLSINASPVLYQRLR 205 Query: 61 RLLDALQAKVSALYGHHREPSKSVVEFRSGDITSFWLLHTASTAYASLSHYLNNPLLHPE 120 RLLDALQAKV+ALYG HREP+K+++EFRSGDI SFWLLHTA+ A+A+LSH ++P LHPE Sbjct: 206 RLLDALQAKVNALYGFHREPTKNIIEFRSGDIASFWLLHTANAAFAALSHLYHHPDLHPE 265 Query: 121 RLYEQLLGLAGSLMTFSRSLALADLPPYDHRDPGPPFARLDGIIRELLDTVISSRYFAIA 180 RL++++L LAG+LMTF+++ LADLP YDH DPGP F+RLD I+RELLDTVIS+RYFAIA Sbjct: 266 RLFQEVLRLAGALMTFTKTYTLADLPAYDHDDPGPVFSRLDTIVRELLDTVISTRYFAIA 325 Query: 181 LHESKPSYHMGMLDSGKIDEKTSFYLAVNADLPAIELVDVVPLRFKIGAPEDVEKFVLAA 240 L E++PS+H+G +DSGKIDEKTSFYL+V+AD+P ELV+ +P RFK+GAP+DV+K VL++ Sbjct: 326 LEETRPSFHLGRIDSGKIDEKTSFYLSVSADMPVAELVEAIPARFKVGAPDDVDKLVLSS 385 Query: 241 LPGVKLVHSPQVPAALPVRPDTYYFTLESKGAMYERMLQAQSICIYVPSGIRDLKLELLA 300 +PGV L ++PQVP A+PVRP YF +ES+G +YERMLQAQ+I IY P+GIR+LKLEL+A Sbjct: 386 MPGVPLTYTPQVPPAIPVRPGACYFAVESRGMLYERMLQAQTITIYAPAGIRELKLELIA 445 Query: 301 VT 302 VT Sbjct: 446 VT 447 >emb|CAQ36647.1| protein of unknown function duf876, bacterial [Ralstonia solanacearum MolK2] Length = 448 Score = 420 bits (1079), Expect = e-115, Method: Composition-based stats. Identities = 200/302 (66%), Positives = 263/302 (87%) Query: 1 MSYLKKAVRLVSENEPRDSLVCIPIVRLRRASSSGFELDPDFVAPSLSVHAAPLLFLRLR 60 ++YLKK+V+LV+E+EPRD + +P+VR+RR + GFELD FVAPSLS++A+P+L+ RLR Sbjct: 146 ITYLKKSVKLVAESEPRDQFISLPVVRVRRTGTGGFELDDTFVAPSLSINASPVLYQRLR 205 Query: 61 RLLDALQAKVSALYGHHREPSKSVVEFRSGDITSFWLLHTASTAYASLSHYLNNPLLHPE 120 RLLDALQAKV+ALYG HREP+K+++EFRSGDI SFWLLHTA+ A+A+LSH ++P LHPE Sbjct: 206 RLLDALQAKVNALYGFHREPTKNIIEFRSGDIASFWLLHTANAAFAALSHLYHHPDLHPE 265 Query: 121 RLYEQLLGLAGSLMTFSRSLALADLPPYDHRDPGPPFARLDGIIRELLDTVISSRYFAIA 180 RL++++L LAG+LMTF+++ LADLP YDH DPGP F+RLD I+RELLDTVIS+RYFAIA Sbjct: 266 RLFQEVLRLAGALMTFTKTYTLADLPAYDHDDPGPVFSRLDTIVRELLDTVISTRYFAIA 325 Query: 181 LHESKPSYHMGMLDSGKIDEKTSFYLAVNADLPAIELVDVVPLRFKIGAPEDVEKFVLAA 240 L E++PS+H+G +DSGKIDEKTSFYL+V+AD+P ELV+ +P RFK+GAP+DV+K VL++ Sbjct: 326 LEETRPSFHLGRIDSGKIDEKTSFYLSVSADMPVAELVEAIPARFKVGAPDDVDKLVLSS 385 Query: 241 LPGVKLVHSPQVPAALPVRPDTYYFTLESKGAMYERMLQAQSICIYVPSGIRDLKLELLA 300 +PGV L ++PQVP A+PVRP YF +ES+G +YERMLQAQ+I IY P+GIR+LKLEL+A Sbjct: 386 MPGVPLTYTPQVPPAIPVRPGACYFAVESRGMLYERMLQAQTITIYAPAGIRELKLELIA 445 Query: 301 VT 302 VT Sbjct: 446 VT 447