BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5221.p (208 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774167.1| lipoprotein [Herbaspirillum seropedicae SmR1... 240 8e-62 ref|YP_003777417.1| lipoprotein [Herbaspirillum seropedicae SmR1... 239 1e-61 ref|YP_004750737.1| putative lipoprotein [Collimonas fungivorans... 149 3e-34 ref|XP_002536556.1| conserved hypothetical protein [Ricinus comm... 130 1e-28 ref|YP_003749638.1| hypothetical protein RPSI07_mp0655 [Ralstoni... 112 4e-23 >ref|YP_003774167.1| lipoprotein [Herbaspirillum seropedicae SmR1] gb|ADJ62259.1| lipoprotein [Herbaspirillum seropedicae SmR1] Length = 209 Score = 240 bits (613), Expect = 8e-62, Method: Composition-based stats. Identities = 159/211 (75%), Positives = 172/211 (81%), Gaps = 5/211 (2%) Query: 1 MRASKFKTGLIIPALLAVMLAGCANTQGKPNPEDEAKNTLESGVAQANTAQAEGKTDEAV 60 MR + KTGL+IPALL +L+GCANT KP PEDEAKNTLESGVA+AN AQ EGKTDEAV Sbjct: 1 MRINTIKTGLVIPALLLAVLSGCANTSSKPGPEDEAKNTLESGVAKANAAQTEGKTDEAV 60 Query: 61 SVLKVVASRFPADKTPWLRIAQIRFDAGDYSDAIVNAQEALKRDPADKVANSIVTVSGLR 120 SVLKVVA+RFPADKTPW+RIAQIRFD+GDYSDAIVNAQEALKRDP DKVANSIVTV+ LR Sbjct: 61 SVLKVVAARFPADKTPWVRIAQIRFDSGDYSDAIVNAQEALKRDPTDKVANSIVTVASLR 120 Query: 121 LATKSLGDLRSQNALNGSVKTEAQDLTKILRESLGENTLVPAPAKPVAAARPRGKAARKA 180 LATK+LGDLR+QNALNGSVKTEAQDLTKILRESLGE L P RG+ RKA Sbjct: 121 LATKALGDLRTQNALNGSVKTEAQDLTKILRESLGEAAL--VPPPAKPPVAKRGRVQRKA 178 Query: 181 APAPAA---DADAGNGSSGSGSGPNPFGNLK 208 AP PAA D G+ S GSGPNPFGNLK Sbjct: 179 APQPAAPDNDDAGGSAPSSGGSGPNPFGNLK 209 >ref|YP_003777417.1| lipoprotein [Herbaspirillum seropedicae SmR1] gb|ADJ65509.1| lipoprotein [Herbaspirillum seropedicae SmR1] Length = 200 Score = 239 bits (611), Expect = 1e-61, Method: Composition-based stats. Identities = 149/208 (71%), Positives = 165/208 (79%), Gaps = 8/208 (3%) Query: 1 MRASKFKTGLIIPALLAVMLAGCANTQGKPNPEDEAKNTLESGVAQANTAQAEGKTDEAV 60 MRASK GLI+ A+L + L GC N Q K NP D+AKN LESG+AQAN A AEGKTDEAV Sbjct: 1 MRASKLNVGLIVSAMLVLALGGCTNIQPKSNPGDDAKNALESGLAQANAAHAEGKTDEAV 60 Query: 61 SVLKVVASRFPADKTPWLRIAQIRFDAGDYSDAIVNAQEALKRDPADKVANSIVTVSGLR 120 SVLK VASRFPADK PW+RIAQ+RFDAGDYSDAIVNAQEAL+RDP DKVAN +VT+SGLR Sbjct: 61 SVLKAVASRFPADKNPWIRIAQLRFDAGDYSDAIVNAQEALRRDPGDKVANGVVTLSGLR 120 Query: 121 LATKSLGDLRSQNALNGSVKTEAQDLTKILRESLGENTLVPAPAKPVAAARPRGKAARKA 180 LA KS GDLR+QNALNG++K EAQDLTKILRE+LGEN LVP P K V R RGKAARK Sbjct: 121 LAVKSSGDLRAQNALNGTLKAEAQDLTKILRENLGENNLVPQP-KAVTPPRARGKAARKT 179 Query: 181 APAPAADADAGNGSSGSGSGPNPFGNLK 208 A + SG+GSGPNPFGNLK Sbjct: 180 -------TSASDTESGNGSGPNPFGNLK 200 >ref|YP_004750737.1| putative lipoprotein [Collimonas fungivorans Ter331] gb|AEK59914.1| putative lipoprotein [Collimonas fungivorans Ter331] Length = 198 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 107/206 (51%), Positives = 132/206 (64%), Gaps = 10/206 (4%) Query: 4 SKFKTGLIIPALLAVMLAGCANTQGKPNPEDEAKNTLESGVAQANTAQAEGKTDEAVSVL 63 S++K+ I LA +++ CA P + L+S VA+A+ AQ G+TD+AV +L Sbjct: 2 SQWKSKFIYGVALACLVSACATP-----PAVDPAAKLDSIVAEADAAQKAGQTDKAVKLL 56 Query: 64 KVVASRFPADKTPWLRIAQIRFDAGDYSDAIVNAQEALKRDPADKVANSIVTVSGLRLAT 123 K S FPADKTPW+R+AQIRFD +Y DAI A E L+RDP DKVANSIV V GLRL+T Sbjct: 57 KDATSAFPADKTPWVRLAQIRFDGENYGDAISYALEGLQRDPKDKVANSIVAVGGLRLST 116 Query: 124 KSLGDLRSQNALNGSVKTEAQDLTKILRESLGENTLVPAPAKPVAAARPRGKAARKAAPA 183 K+L DLR+QN LNG+V+TEAQ L KILRESLGE LVP P A R A AA A Sbjct: 117 KALNDLRTQNDLNGNVRTEAQGLAKILRESLGETVLVP----PRPKAVARPAPAAAAAAA 172 Query: 184 PAADADAGNGS-SGSGSGPNPFGNLK 208 A G+ SG G NPFG+L+ Sbjct: 173 KKGAVPAKPGTPEPSGDGANPFGSLQ 198 >ref|XP_002536556.1| conserved hypothetical protein [Ricinus communis] gb|EEF25827.1| conserved hypothetical protein [Ricinus communis] Length = 198 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 80/155 (51%), Positives = 105/155 (67%), Gaps = 7/155 (4%) Query: 54 GKTDEAVSVLKVVASRFPADKTPWLRIAQIRFDAGDYSDAIVNAQEALKRDPADKVANSI 113 G D+A S+L+ A+ +P+DKTPWL +AQI+FD +Y +AI+NAQEAL+RDP DK+ NSI Sbjct: 51 GHVDKAQSILRSAATNYPSDKTPWLHMAQIKFDRANYGEAILNAQEALQRDPNDKLGNSI 110 Query: 114 VTVSGLRLATKSLGDLRSQNALNGSVKTEAQDLTKILRESLGENTLVPAPAKPVAAARPR 173 + VSGLRL+T++L DL QN LNGS+++EAQDL K+LR SLGE LVP + PR Sbjct: 111 IAVSGLRLSTRALADLSQQNNLNGSLRSEAQDLAKLLRTSLGEEVLVPT-----SNGAPR 165 Query: 174 GKAARKAAPAPAADADAGNGSSGSGSGPNPFGNLK 208 AA + PA A + S S +PFG LK Sbjct: 166 RTAASQ--PAAVKKQPAASTGKNSNSTNDPFGGLK 198 >ref|YP_003749638.1| hypothetical protein RPSI07_mp0655 [Ralstonia solanacearum PSI07] emb|CBJ35000.1| conserved exported protein of unknown function, partial TRP motif [Ralstonia solanacearum PSI07] Length = 218 Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats. Identities = 74/186 (39%), Positives = 113/186 (60%), Gaps = 5/186 (2%) Query: 4 SKFKTGLIIPALLAVMLAGCANTQGKPNPEDEAKNTLESGVAQANTAQAEGKTDEAVSVL 63 S+ L + A AV++ GCA T G + E AK+ +++A G+ D+A+ + Sbjct: 8 SRVLRSLAVLASSAVLITGCATTSGPQSDEAFAKS-----MSEAEATAKGGQQDKAIDLY 62 Query: 64 KVVASRFPADKTPWLRIAQIRFDAGDYSDAIVNAQEALKRDPADKVANSIVTVSGLRLAT 123 + +A P PW+RIAQI+F + Y AI+ A+EAL+RD +D+ A SI+ VSGLR+A Sbjct: 63 QQIAKANPTRDEPWVRIAQIQFGSEKYPQAILAAEEALQRDNSDRQAKSILAVSGLRVAR 122 Query: 124 KSLGDLRSQNALNGSVKTEAQDLTKILRESLGENTLVPAPAKPVAAARPRGKAARKAAPA 183 +SL +LR+ +AL G V+T+AQ L K+LR++LGE L PA +P A R + ++AAP Sbjct: 123 RSLQELRADSALAGDVRTDAQVLAKMLRDTLGEQALFPADQQPAKAQPRRPRVVKRAAPV 182 Query: 184 PAADAD 189 A+ Sbjct: 183 TTEAAN 188