BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.5220.p         (166 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003777416.1| hypothetical protein Hsero_4037 [Herbaspiril...   275   2e-72
ref|YP_003774168.1| hypothetical protein Hsero_0741 [Herbaspiril...   273   4e-72
ref|YP_004750736.1| hypothetical protein CFU_0074 [Collimonas fu...   240   6e-62
ref|ZP_05135529.1| type VI secretion protein, VC_A0107 family [S...   222   1e-56
gb|EFV87541.1| hypothetical protein HMPREF0005_04853 [Achromobac...   222   2e-56

>ref|YP_003777416.1| hypothetical protein Hsero_4037 [Herbaspirillum seropedicae SmR1]
 gb|ADJ65508.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 166

 Score =  275 bits (703), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 158/166 (95%), Positives = 165/166 (99%)

Query: 1   MAKRESIQKKLQKVRPPRVQMTYDVEIGDAIEKKELAFVTGVVGDFGGNSEVPQPRLKDR 60
           MAK+ESIQKKLQKVRPPRVQMTYDVEIGDAIEKKELAFVTGV+GDFGGNSE+PQPRLKDR
Sbjct: 1   MAKKESIQKKLQKVRPPRVQMTYDVEIGDAIEKKELAFVTGVMGDFGGNSELPQPRLKDR 60

Query: 61  KFINIDPDNFDEVMKGIEPRAVYRVSNELSDKGGEFAVELKFRSMEDFRPESVVQQVEPL 120
           KFIN+DPDNFDEVMKGIEPRAVYRV NELSDKGGEFAVELKFRSMEDFRPESVVQQVEPL
Sbjct: 61  KFINVDPDNFDEVMKGIEPRAVYRVPNELSDKGGEFAVELKFRSMEDFRPESVVQQVEPL 120

Query: 121 RKLLEARTKLADLRNKIAGNDKLEDILSDVLNSTEKLAELSKQTNK 166
           RKLLEART+LADLRNKIAGN+KLEDIL+DVLNSTEKLAELSKQTNK
Sbjct: 121 RKLLEARTRLADLRNKIAGNEKLEDILNDVLNSTEKLAELSKQTNK 166


>ref|YP_003774168.1| hypothetical protein Hsero_0741 [Herbaspirillum seropedicae SmR1]
 gb|ADJ62260.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 166

 Score =  273 bits (699), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 158/166 (95%), Positives = 163/166 (98%)

Query: 1   MAKRESIQKKLQKVRPPRVQMTYDVEIGDAIEKKELAFVTGVVGDFGGNSEVPQPRLKDR 60
           MAKRESIQKKLQKVRPPRVQMTYDVEIGDAIEKKELAFVTGVVGDFGGNSEVPQPRLKDR
Sbjct: 1   MAKRESIQKKLQKVRPPRVQMTYDVEIGDAIEKKELAFVTGVVGDFGGNSEVPQPRLKDR 60

Query: 61  KFINIDPDNFDEVMKGIEPRAVYRVSNELSDKGGEFAVELKFRSMEDFRPESVVQQVEPL 120
           KF+N+DPDNFDEVMK IEPRAVYRV NELSDKGGEFAVELKFRSMEDFRPE+VVQQVEPL
Sbjct: 61  KFVNVDPDNFDEVMKAIEPRAVYRVPNELSDKGGEFAVELKFRSMEDFRPEAVVQQVEPL 120

Query: 121 RKLLEARTKLADLRNKIAGNDKLEDILSDVLNSTEKLAELSKQTNK 166
           RKLLEARTKLADLRNKIAGNDKLEDIL+DVLNSTEKLAEL +QTNK
Sbjct: 121 RKLLEARTKLADLRNKIAGNDKLEDILNDVLNSTEKLAELRQQTNK 166


>ref|YP_004750736.1| hypothetical protein CFU_0074 [Collimonas fungivorans Ter331]
 gb|AEK59913.1| hypothetical protein CFU_0074 [Collimonas fungivorans Ter331]
          Length = 169

 Score =  240 bits (612), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 133/166 (80%), Positives = 151/166 (90%)

Query: 1   MAKRESIQKKLQKVRPPRVQMTYDVEIGDAIEKKELAFVTGVVGDFGGNSEVPQPRLKDR 60
           MAK+ES QK+LQKVRPPRVQMTYDVEIGDAIE+KEL FV GV+GDF G SEV Q +LKDR
Sbjct: 1   MAKKESTQKRLQKVRPPRVQMTYDVEIGDAIEQKELPFVMGVIGDFSGKSEVAQTKLKDR 60

Query: 61  KFINIDPDNFDEVMKGIEPRAVYRVSNELSDKGGEFAVELKFRSMEDFRPESVVQQVEPL 120
           KF+NID DNFDEVMKG+EPRA +RV N LSD GGEF V+LKF+S++DFRPE+VVQQ+EPL
Sbjct: 61  KFVNIDNDNFDEVMKGVEPRAAFRVPNHLSDAGGEFGVDLKFKSIDDFRPEAVVQQIEPL 120

Query: 121 RKLLEARTKLADLRNKIAGNDKLEDILSDVLNSTEKLAELSKQTNK 166
           ++LLEARTKLADLRNK+AGNDKLEDIL+DVLNSTEKLA LSKQT K
Sbjct: 121 KQLLEARTKLADLRNKLAGNDKLEDILNDVLNSTEKLAALSKQTKK 166


>ref|ZP_05135529.1| type VI secretion protein, VC_A0107 family [Stenotrophomonas sp.
           SKA14]
 gb|EED39590.1| type VI secretion protein, VC_A0107 family [Stenotrophomonas sp.
           SKA14]
          Length = 166

 Score =  222 bits (566), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 121/160 (75%), Positives = 146/160 (91%)

Query: 1   MAKRESIQKKLQKVRPPRVQMTYDVEIGDAIEKKELAFVTGVVGDFGGNSEVPQPRLKDR 60
           MAK+ESIQK+LQK+RPPRVQ+TYDVE GDAIE+KEL FV GV+GDF GN E P P++KDR
Sbjct: 1   MAKKESIQKRLQKIRPPRVQLTYDVEKGDAIEQKELPFVVGVMGDFSGNPEQPLPKVKDR 60

Query: 61  KFINIDPDNFDEVMKGIEPRAVYRVSNELSDKGGEFAVELKFRSMEDFRPESVVQQVEPL 120
           KF+N+D DNFDEVM+GI PRAVYRV N +SD+GGEF VELKF S+EDFRPESVV+Q+EPL
Sbjct: 61  KFVNVDLDNFDEVMEGIAPRAVYRVPNRISDEGGEFGVELKFNSIEDFRPESVVEQIEPL 120

Query: 121 RKLLEARTKLADLRNKIAGNDKLEDILSDVLNSTEKLAEL 160
           R+LLE+RTKLADLRNK+AGN+KLED+L+DVLN+TE+L +L
Sbjct: 121 RRLLESRTKLADLRNKLAGNEKLEDLLTDVLNNTEQLKKL 160


>gb|EFV87541.1| hypothetical protein HMPREF0005_04853 [Achromobacter xylosoxidans
           C54]
          Length = 174

 Score =  222 bits (565), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 121/166 (72%), Positives = 145/166 (87%)

Query: 1   MAKRESIQKKLQKVRPPRVQMTYDVEIGDAIEKKELAFVTGVVGDFGGNSEVPQPRLKDR 60
           MAK+ES+QK+LQKVRPPRVQ+TYDVE GDAIE+KEL FV GVVGDF   SE   PRLKDR
Sbjct: 1   MAKKESVQKRLQKVRPPRVQLTYDVEKGDAIEQKELPFVVGVVGDFSAQSEAELPRLKDR 60

Query: 61  KFINIDPDNFDEVMKGIEPRAVYRVSNELSDKGGEFAVELKFRSMEDFRPESVVQQVEPL 120
           KF+NID DNFD+VM+G+EPRA YRV N L+D+GG F V+LKFRS+EDFRPE+VVQQ+EPL
Sbjct: 61  KFVNIDVDNFDDVMRGLEPRAAYRVKNRLTDEGGTFGVDLKFRSIEDFRPEAVVQQIEPL 120

Query: 121 RKLLEARTKLADLRNKIAGNDKLEDILSDVLNSTEKLAELSKQTNK 166
           ++LLE RTKLADLRNK+AGNDKLED+L +VL+STEKL +L+ +  K
Sbjct: 121 KELLEIRTKLADLRNKLAGNDKLEDLLGEVLSSTEKLQQLTSEAGK 166