BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5216.p (580 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777412.1| hypothetical protein Hsero_4033 [Herbaspiril... 1063 0.0 ref|YP_003774172.1| hypothetical protein Hsero_0745 [Herbaspiril... 1017 0.0 ref|YP_004750732.1| protein ImpG/VasA [Collimonas fungivorans Te... 872 0.0 gb|EFV87545.1| type VI secretion protein [Achromobacter xylosoxi... 720 0.0 gb|EGP43256.1| type VI secretion protein [Achromobacter xylosoxi... 719 0.0 >ref|YP_003777412.1| hypothetical protein Hsero_4033 [Herbaspirillum seropedicae SmR1] gb|ADJ65504.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 614 Score = 1063 bits (2748), Expect = 0.0, Method: Composition-based stats. Identities = 530/580 (91%), Positives = 548/580 (94%) Query: 1 MAGEICEDPHIERMIQSYALLNARVSKRLDDDYPEFTEALFEVLYPHYLRPFPSCSIARM 60 MAGEICEDPHIERMIQSYALLNARVSKRLDDDYP+FTEALFEVLYPHYLRPFPSCSIARM Sbjct: 35 MAGEICEDPHIERMIQSYALLNARVSKRLDDDYPQFTEALFEVLYPHYLRPFPSCSIARM 94 Query: 61 DSAASAAQLTNATVIPRGTALSTRPVKGVICRFQSAYDVPVAPIRLAQAVFSPIIDAPEA 120 D A SA QLT+AT+IPRGT LSTRPVKGV+C+FQ+ YDVPVAPI L AVFSPIIDAPEA Sbjct: 95 DCAESAEQLTSATIIPRGTTLSTRPVKGVVCQFQTVYDVPVAPICLTHAVFSPIIDAPEA 154 Query: 121 VVLPTSVTSSLSITIETTTEQVTLSKLGLASLRVFIDGEASFCAALRDSLFMRSTAAWVE 180 VVLPTSVTSSLSI I T EQ+ L+KL L SLRVFIDGEASFCAALRDSLFMRS AAW+E Sbjct: 155 VVLPTSVTSSLSIGIATAGEQLALAKLDLVSLRVFIDGEASFCAALRDSLFMRSAAAWIE 214 Query: 181 LPRSGRWTGLRKVPLAEVGFAEEDALIDFPSQSHPAYRLLTEYFAFPEKFNFFDIDLSAI 240 LP S RW L +PLAEVGFA+EDALIDFPSQSHPAYR LTEYFAFPEKFNFFDIDLSAI Sbjct: 215 LPGSRRWVPLPAIPLAEVGFADEDALIDFPSQSHPAYRHLTEYFAFPEKFNFFDIDLSAI 274 Query: 241 LAVLPAGTKSFTLHLGLSGLRADSHIARQLGGVSAANLLLGCTPVINLFSQRGDPIRLTH 300 LAVLPA +KSF LHLGLSGLRADSHIARQLGGVSAANLLLGCTPVINLFSQRGDPIRLTH Sbjct: 275 LAVLPADSKSFILHLGLSGLRADSHIARQLGGVSAANLLLGCTPVINLFSQRGDPIRLTH 334 Query: 301 AGASYPVLPDGRRAFGYEVYSIDSVQLVRQTPQGESITRFRPFYSLRHGQAPESDGHYWA 360 AGA YPVLPDGRRAFGYEVYSIDSVQLVR+TPQGESIT FRPFYSLRHGQ+PESDGHYWA Sbjct: 335 AGAYYPVLPDGRRAFGYEVYSIDSVQLVRETPQGESITSFRPFYSLRHGQSPESDGHYWA 394 Query: 361 MRRDELVALKSPGYETEISIVDIDFDPAKVETDTLSIELTCTNRDLPALLTYGLPGGDLS 420 MRRDEL+ALKSPGYETEISIVDIDFDP+K+ETDTLSIELTCTNRDLPALL YGLPGGDLS Sbjct: 395 MRRDELIALKSPGYETEISIVDIDFDPSKIETDTLSIELTCTNRDLPALLAYGLPGGDLS 454 Query: 421 LEGGGVIRTAALLRKPTLPSRFERGRGAQWRLISHLSLNHLSLMRGGLEAFQEMLTLYDQ 480 LEGGGVIRTAALLRKPTLPSRFERGRGAQWRLIS LSLNHLSLMR GLEAFQEMLTLYDQ Sbjct: 455 LEGGGVIRTAALLRKPTLPSRFERGRGAQWRLISQLSLNHLSLMRVGLEAFQEMLTLYDQ 514 Query: 481 SNSPISQRQISAIAAIDHKATTAWLPGNPFASLVRGIEVKLTVDEEGFVGSGLHAFAGVI 540 SNSPISQRQISAIAAIDH+ TAWLPGNPFASLVRGIEVKLTVDEEGFVGSGLHAFAGVI Sbjct: 515 SNSPISQRQISAIAAIDHRPATAWLPGNPFASLVRGIEVKLTVDEEGFVGSGLHAFAGVI 574 Query: 541 DRFMGLYVHANSFSQLTVISKRTGEELLKCRPRSGDLSLA 580 DRFMGLYVHANSFSQLTVISKRTGEELLKCRPRSGDLSLA Sbjct: 575 DRFMGLYVHANSFSQLTVISKRTGEELLKCRPRSGDLSLA 614 >ref|YP_003774172.1| hypothetical protein Hsero_0745 [Herbaspirillum seropedicae SmR1] gb|ADJ62264.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 614 Score = 1017 bits (2630), Expect = 0.0, Method: Composition-based stats. Identities = 511/580 (88%), Positives = 553/580 (95%) Query: 1 MAGEICEDPHIERMIQSYALLNARVSKRLDDDYPEFTEALFEVLYPHYLRPFPSCSIARM 60 M+GE+CEDPHIERMIQSYALLNARVSKRLDDDYPEFTEALFEVLYPHYLRPFPSCSIARM Sbjct: 35 MSGEVCEDPHIERMIQSYALLNARVSKRLDDDYPEFTEALFEVLYPHYLRPFPSCSIARM 94 Query: 61 DSAASAAQLTNATVIPRGTALSTRPVKGVICRFQSAYDVPVAPIRLAQAVFSPIIDAPEA 120 D AASAAQLT A+VIPRGTAL+TR VKGV C+FQ+AYDV VAPIRL+ A F+PII+APEA Sbjct: 95 DYAASAAQLTTASVIPRGTALTTRQVKGVACKFQTAYDVTVAPIRLSHATFAPIIEAPEA 154 Query: 121 VVLPTSVTSSLSITIETTTEQVTLSKLGLASLRVFIDGEASFCAALRDSLFMRSTAAWVE 180 V LPTSV+SSLSI I+TT+EQ+TL++LGL+SLRVFIDGEASFCAALRDSLFMRS AAWVE Sbjct: 155 VTLPTSVSSSLSIVIDTTSEQLTLAQLGLSSLRVFIDGEASFCAALRDSLFMRSVAAWVE 214 Query: 181 LPRSGRWTGLRKVPLAEVGFAEEDALIDFPSQSHPAYRLLTEYFAFPEKFNFFDIDLSAI 240 LP SGRWT LRKVPLAEVGFAE+DALIDFP++SHPAYRLLTEYF FPEKFNFFD+DL+AI Sbjct: 215 LPNSGRWTALRKVPLAEVGFAEDDALIDFPARSHPAYRLLTEYFCFPEKFNFFDLDLAAI 274 Query: 241 LAVLPAGTKSFTLHLGLSGLRADSHIARQLGGVSAANLLLGCTPVINLFSQRGDPIRLTH 300 LA+LP GT+ FTLHLGLSGLRADSH+ARQLGGVSAANLLLGCTPVINLF QRGDPIRLTH Sbjct: 275 LALLPTGTRKFTLHLGLSGLRADSHVARQLGGVSAANLLLGCTPVINLFRQRGDPIRLTH 334 Query: 301 AGASYPVLPDGRRAFGYEVYSIDSVQLVRQTPQGESITRFRPFYSLRHGQAPESDGHYWA 360 AGASYPV+PD RRAFGYEVYSIDSVQLVRQTPQGES+T+FRPFYSLRHGQ+PE +GHYWA Sbjct: 335 AGASYPVVPDARRAFGYEVYSIDSVQLVRQTPQGESVTQFRPFYSLRHGQSPEKEGHYWA 394 Query: 361 MRRDELVALKSPGYETEISIVDIDFDPAKVETDTLSIELTCTNRDLPALLTYGLPGGDLS 420 MRRDELVALKSPGYETEISIVDIDFDPA+VETDTLSIELTCTNRDLPA LTYGLPGGDL Sbjct: 395 MRRDELVALKSPGYETEISIVDIDFDPAEVETDTLSIELTCTNRDLPASLTYGLPGGDLQ 454 Query: 421 LEGGGVIRTAALLRKPTLPSRFERGRGAQWRLISHLSLNHLSLMRGGLEAFQEMLTLYDQ 480 +EGGG++R+AALLRKPTLP+RFERGRGA WRLISHLSLNHLSLMRGGLEAFQEMLTLYD Sbjct: 455 MEGGGLVRSAALLRKPTLPARFERGRGAHWRLISHLSLNHLSLMRGGLEAFQEMLTLYDL 514 Query: 481 SNSPISQRQISAIAAIDHKATTAWLPGNPFASLVRGIEVKLTVDEEGFVGSGLHAFAGVI 540 SNSPISQRQI AI +IDHKA+TAWLPGNPFASLVRGIEVKLTVDEEGFVGSGLHAFAGVI Sbjct: 515 SNSPISQRQIGAIVSIDHKASTAWLPGNPFASLVRGIEVKLTVDEEGFVGSGLHAFAGVI 574 Query: 541 DRFMGLYVHANSFSQLTVISKRTGEELLKCRPRSGDLSLA 580 DRF+GLYVHANSF+QL V+SKRT EELL C+PRSGDL+LA Sbjct: 575 DRFLGLYVHANSFTQLRVLSKRTAEELLICKPRSGDLNLA 614 >ref|YP_004750732.1| protein ImpG/VasA [Collimonas fungivorans Ter331] gb|AEK59909.1| Protein ImpG/VasA [Collimonas fungivorans Ter331] Length = 614 Score = 872 bits (2253), Expect = 0.0, Method: Composition-based stats. Identities = 410/579 (70%), Positives = 489/579 (84%) Query: 1 MAGEICEDPHIERMIQSYALLNARVSKRLDDDYPEFTEALFEVLYPHYLRPFPSCSIARM 60 M+GE+ EDPHIERMIQS+AL+NAR SKRLDDDYPEFTEALFEVLYPHYLRPFPSCSIARM Sbjct: 35 MSGEVSEDPHIERMIQSFALINARTSKRLDDDYPEFTEALFEVLYPHYLRPFPSCSIARM 94 Query: 61 DSAASAAQLTNATVIPRGTALSTRPVKGVICRFQSAYDVPVAPIRLAQAVFSPIIDAPEA 120 D + +AAQLT A +PRGT L+TR VKGV C+F++ Y+V VAP++L+ AVF PII+ P+A Sbjct: 95 DYSVAAAQLTTAMPVPRGTELTTRQVKGVACKFKTTYEVTVAPVQLSHAVFDPIIEPPDA 154 Query: 121 VVLPTSVTSSLSITIETTTEQVTLSKLGLASLRVFIDGEASFCAALRDSLFMRSTAAWVE 180 V+LP + +S + IT E+T EQ ++LG+ SLRVFIDGE SFCAALRD+LFMR+ A+VE Sbjct: 155 VLLPPTASSRIGITFESTAEQAGFAELGIKSLRVFIDGEPSFCAALRDTLFMRTVRAYVE 214 Query: 181 LPRSGRWTGLRKVPLAEVGFAEEDALIDFPSQSHPAYRLLTEYFAFPEKFNFFDIDLSAI 240 + +SG+W + K+P+ VGF E+++LIDFP++SHPAYRLLTEYF++PEKFNFFD+D++ I Sbjct: 215 VGKSGKWHAVNKIPVTPVGFEEDESLIDFPARSHPAYRLLTEYFSYPEKFNFFDVDVAEI 274 Query: 241 LAVLPAGTKSFTLHLGLSGLRADSHIARQLGGVSAANLLLGCTPVINLFSQRGDPIRLTH 300 +LP G K FTLHL LSGLRADS+ AR LG +S NLLLGCTPVINLF QRGDPIRLTH Sbjct: 275 TKLLPPGCKKFTLHLVLSGLRADSNTARMLGTLSTNNLLLGCTPVINLFKQRGDPIRLTH 334 Query: 301 AGASYPVLPDGRRAFGYEVYSIDSVQLVRQTPQGESITRFRPFYSLRHGQAPESDGHYWA 360 A YPV+ D RRA+ YEV+SIDSVQLVRQTP+GESIT FRPFYSLRHG++ + GHYWA Sbjct: 335 TSAYYPVVGDSRRAYAYEVHSIDSVQLVRQTPEGESITEFRPFYSLRHGESVDKAGHYWA 394 Query: 361 MRRDELVALKSPGYETEISIVDIDFDPAKVETDTLSIELTCTNRDLPALLTYGLPGGDLS 420 MRRDE+VA +SPGYETEISIVDIDFDPA +ETDTLSIELTC NR+LPA L YGL GGDL Sbjct: 395 MRRDEMVASRSPGYETEISIVDIDFDPATIETDTLSIELTCCNRNLPASLAYGLAGGDLF 454 Query: 421 LEGGGVIRTAALLRKPTLPSRFERGRGAQWRLISHLSLNHLSLMRGGLEAFQEMLTLYDQ 480 LEGG ++ + LRKP+ P RFERGRGA WRLISHL+LNHLSL +GGLEA QE L+LYD Sbjct: 455 LEGGSLVNSIGFLRKPSEPCRFERGRGAHWRLISHLALNHLSLAKGGLEALQETLSLYDL 514 Query: 481 SNSPISQRQISAIAAIDHKATTAWLPGNPFASLVRGIEVKLTVDEEGFVGSGLHAFAGVI 540 S ISQRQI ++ IDHKA TAWLPGNPFASLVRGIE+++T+DEEGFVGSG+H FA V+ Sbjct: 515 PRSAISQRQIGSVVGIDHKAATAWLPGNPFASLVRGIEIRVTLDEEGFVGSGIHVFANVL 574 Query: 541 DRFMGLYVHANSFSQLTVISKRTGEELLKCRPRSGDLSL 579 DRF+GLYVHANSF+QL + SKRTGEE+L+C PRSGD +L Sbjct: 575 DRFLGLYVHANSFTQLVIASKRTGEEILRCLPRSGDSNL 613 >gb|EFV87545.1| type VI secretion protein [Achromobacter xylosoxidans C54] Length = 612 Score = 720 bits (1858), Expect = 0.0, Method: Composition-based stats. Identities = 352/581 (60%), Positives = 436/581 (75%), Gaps = 4/581 (0%) Query: 1 MAGEICEDPHIERMIQSYALLNARVSKRLDDDYPEFTEALFEVLYPHYLRPFPSCSIARM 60 ++GE CEDPH+ERMI+S+ALL AR++K+LDDDYPEFTEALFEV+YPHYLRPFP+CSIA+ Sbjct: 35 LSGETCEDPHVERMIESFALLGARINKKLDDDYPEFTEALFEVMYPHYLRPFPACSIAQF 94 Query: 61 DSAASAAQLTNATVIPRGTALSTRPVKGVICRFQSAYDVPVAPIRLAQAVFSPIIDAPEA 120 D AAQLT + RGT L + V+GV CRF++AYDV +AP+ + QA F+ +AP A Sbjct: 95 DMGGVAAQLTAPVRVARGTELKSHAVRGVACRFRTAYDVTLAPLAIRQATFASTANAPSA 154 Query: 121 VVLPTSVTSSLSITIETTTEQVTLSKLGLASLRVFIDGEASFCAALRDSLFMRSTAAWVE 180 LP VT LS+T+ E + + L + LRV++ GE SF AALRD LF+R+ AA++E Sbjct: 155 TQLPPGVTGRLSLTLACLAETQSFATLAVDRLRVYLHGEPSFVAALRDCLFLRTAAAYIE 214 Query: 181 LPRSGRWTGLRKVPLAEVGFAEEDALIDFPSQSHPAYRLLTEYFAFPEKFNFFDIDLSAI 240 + GRW L VPLA+VG AE+DALIDFP+ SHPAYRLL EYF F EKFNF DIDL+A+ Sbjct: 215 -TQPGRWNRLPDVPLAQVGLAEDDALIDFPASSHPAYRLLAEYFVFSEKFNFVDIDLAAL 273 Query: 241 L-AVLPAGTKSFTLHLGLSGLRADSHIARQLGGVSAANLLLGCTPVINLFSQRGDPIRLT 299 AV P + FTLHL + GLRADS+ AR L SA N LGCTPVINLF QR DPIR+T Sbjct: 274 RRAVGP--LREFTLHLPVKGLRADSNTARLLESASADNFRLGCTPVINLFEQRADPIRVT 331 Query: 300 HAGASYPVLPDGRRAFGYEVYSIDSVQLVRQTPQGESITRFRPFYSLRHGQAPESDGHYW 359 HA ASYPV+ D RRA+GYEVYSID V+LVRQ QG+S+ FRPFYSL HG+ PE HYW Sbjct: 332 HAAASYPVVADARRAYGYEVYSIDRVRLVRQNAQGDSVVEFRPFYSLHHGETPEGASHYW 391 Query: 360 AMRRDELVALKSPGYETEISIVDIDFDPAKVETDTLSIELTCTNRDLPALLTYGLPGGDL 419 RRD +VA +SPGYE E+SIVDIDF+PA +T+TLS+ELTCTNRDLP+ L G PGGDL Sbjct: 392 TARRDSMVAERSPGYEMEMSIVDIDFNPALPQTETLSLELTCTNRDLPSHLAVGQPGGDL 451 Query: 420 SLEGGGVIRTAALLRKPTLPSRFERGRGAQWRLISHLSLNHLSLMRGGLEAFQEMLTLYD 479 LEGG V R +LR+PT RF++GR A WRLISHL+LNHLSL+ GL A +E L LYD Sbjct: 452 FLEGGSVAREIRMLRRPTHTHRFQQGRAAHWRLISHLALNHLSLVHSGLPALKETLRLYD 511 Query: 480 QSNSPISQRQISAIAAIDHKATTAWLPGNPFASLVRGIEVKLTVDEEGFVGSGLHAFAGV 539 S++ ++ RQI + +D+K T W+PG PFA+ VRGIE++LT++EE FVG+ LHAF V Sbjct: 512 LSHAAVAARQIEGLVGLDYKPATHWMPGEPFATFVRGIEIRLTINEENFVGTSLHAFVAV 571 Query: 540 IDRFMGLYVHANSFSQLTVISKRTGEELLKCRPRSGDLSLA 580 ++RF GLYVHANSF QL V+S+R EE+L+C P +GD LA Sbjct: 572 LNRFFGLYVHANSFVQLVVLSRRGAEEILRCPPCNGDAILA 612 >gb|EGP43256.1| type VI secretion protein [Achromobacter xylosoxidans AXX-A] Length = 612 Score = 719 bits (1855), Expect = 0.0, Method: Composition-based stats. Identities = 351/581 (60%), Positives = 437/581 (75%), Gaps = 4/581 (0%) Query: 1 MAGEICEDPHIERMIQSYALLNARVSKRLDDDYPEFTEALFEVLYPHYLRPFPSCSIARM 60 ++GE CEDPH+ERMI+S+ALL AR++K+LDDDYPEFTEALFEV+YPHYLRPFPSCSIA+ Sbjct: 35 LSGETCEDPHVERMIESFALLGARINKKLDDDYPEFTEALFEVMYPHYLRPFPSCSIAQF 94 Query: 61 DSAASAAQLTNATVIPRGTALSTRPVKGVICRFQSAYDVPVAPIRLAQAVFSPIIDAPEA 120 D AAQLT + RGT L + V+GV CRF++AYDV +AP+ + QA F+ +AP + Sbjct: 95 DMGGVAAQLTAPVRLARGTELKSHAVRGVACRFRTAYDVTLAPVAIRQAAFASTANAPSS 154 Query: 121 VVLPTSVTSSLSITIETTTEQVTLSKLGLASLRVFIDGEASFCAALRDSLFMRSTAAWVE 180 LP VT LS+T+ E + + L + LRV++ GE SF AALRD LF+R+ AA++E Sbjct: 155 TQLPPGVTGRLSLTLACLAETQSFATLAVDRLRVYLHGEPSFVAALRDCLFLRTAAAYIE 214 Query: 181 LPRSGRWTGLRKVPLAEVGFAEEDALIDFPSQSHPAYRLLTEYFAFPEKFNFFDIDLSAI 240 + GRW L +VPLA+VG AE+DALIDFP+ SHPAYRLL EYF F EKFNF DIDL+A+ Sbjct: 215 -TQPGRWNRLPEVPLAQVGLAEDDALIDFPASSHPAYRLLAEYFVFSEKFNFVDIDLAAL 273 Query: 241 L-AVLPAGTKSFTLHLGLSGLRADSHIARQLGGVSAANLLLGCTPVINLFSQRGDPIRLT 299 AV P + FTLHL + GLRADS+ AR L SA N LGCTPVINLF QR DPIR+T Sbjct: 274 RRAVGP--VREFTLHLPVKGLRADSNTARLLESASADNFRLGCTPVINLFEQRADPIRVT 331 Query: 300 HAGASYPVLPDGRRAFGYEVYSIDSVQLVRQTPQGESITRFRPFYSLRHGQAPESDGHYW 359 HA ASYPV+ D RRA+GYEVYSID V+LVRQ QG+S+ FRPFYSL HG+ PE HYW Sbjct: 332 HAAASYPVVADARRAYGYEVYSIDRVRLVRQNAQGDSVVEFRPFYSLHHGETPEGASHYW 391 Query: 360 AMRRDELVALKSPGYETEISIVDIDFDPAKVETDTLSIELTCTNRDLPALLTYGLPGGDL 419 RRD +VA +SPGYE E+SIVDIDF+PA +T+TLS+ELTCTNRDLP+ L G PGGDL Sbjct: 392 TARRDPMVAERSPGYEMEMSIVDIDFNPALPQTETLSLELTCTNRDLPSHLAVGQPGGDL 451 Query: 420 SLEGGGVIRTAALLRKPTLPSRFERGRGAQWRLISHLSLNHLSLMRGGLEAFQEMLTLYD 479 LEGG V R +LR+PT RF++GR A WRLISHL+LNHLSL+ GL A +E L LYD Sbjct: 452 FLEGGSVAREIRMLRRPTHTHRFQQGRAAHWRLISHLALNHLSLVHSGLPALKETLRLYD 511 Query: 480 QSNSPISQRQISAIAAIDHKATTAWLPGNPFASLVRGIEVKLTVDEEGFVGSGLHAFAGV 539 S++ ++ RQI + +D+K T W+PG PFA+ VRGIE++LT++E+ FVG+ LHAF V Sbjct: 512 LSHAAVAARQIEGLVGLDYKPATHWMPGEPFATFVRGIEIRLTINEDNFVGTSLHAFVAV 571 Query: 540 IDRFMGLYVHANSFSQLTVISKRTGEELLKCRPRSGDLSLA 580 ++RF GLYVHANSF QL V+S+R EE+L+C P +GD LA Sbjct: 572 LNRFFGLYVHANSFVQLVVLSRRGAEEILRCPPCNGDAILA 612