BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.5215.p         (187 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_02375885.1| 63 kDa protein [Burkholderia thailandensis TX...    67   8e-10

>ref|ZP_02375885.1| 63 kDa protein [Burkholderia thailandensis TXDOH]
          Length = 1162

 Score = 67.4 bits (163), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 52/136 (38%), Positives = 66/136 (48%), Gaps = 6/136 (4%)

Query: 1    MRRKRTAAAQEAHEGRRQPHILHLPAAQCLFHVSDGDSLIFARRIGLNPLDFAGRKAEYG 60
            M+R+R  AAQ+  E RR+         +    +      +    I L  LD A RKAE  
Sbjct: 1027 MQRQRALAAQQPEERRRELDARQRARLERRVALRIVLQRVARCVIRLRALDLARRKAERQ 1086

Query: 61   AIGKAQEITD------RTFMRNSVALEPEFNHAHGLEKLEAVRSGEQPLDHARLKSPLRG 114
             I K     D      R+        EP     H LE+LEA+R  EQPLD+AR+ SPLRG
Sbjct: 1087 RIAKTDPPRDDLARPARSMALRMALREPGLEQPHCLEELEAMRLVEQPLDYARIDSPLRG 1146

Query: 115  LHLSSSSPVLLDITVN 130
            LH   SSPV LD T++
Sbjct: 1147 LHRMISSPVRLDTTIS 1162