BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.5209.p         (179 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001816416.1| hypothetical protein BamMC406_6435 [Burkhold...   102   2e-20
ref|YP_001893689.1| hypothetical protein Bphyt_0013 [Burkholderi...   101   4e-20
ref|YP_002908729.1| hypothetical protein bglu_2g11000 [Burkholde...    97   1e-18
ref|ZP_04894991.1| conserved hypothetical protein [Burkholderia ...    92   3e-17
ref|YP_002910671.1| hypothetical protein bglu_1g07800 [Burkholde...    90   2e-16

>ref|YP_001816416.1| hypothetical protein BamMC406_6435 [Burkholderia ambifaria MC40-6]
 gb|ACB68863.1| conserved hypothetical protein [Burkholderia ambifaria MC40-6]
          Length = 245

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 58/156 (37%), Positives = 85/156 (54%), Gaps = 3/156 (1%)

Query: 15  MVSGVIKNYECTRAEASFVLTRNDQRVMEMSAVANAFAGMGGVATSQMANASNIEEVADY 74
           ++ G IKN   TR    F+ T  D+  M  +AV    AG+GGVA    A+A +  E AD 
Sbjct: 13  LLRGHIKNLRSTRQFQEFLFTDADRTAMGATAVVAGLAGLGGVAIGLAASADDTAEEADL 72

Query: 75  LSFDIDGEKYKGWVWRSPFAEGDMADVIYRRTINGKELVAIARPSDRMIALYPHCSRGVL 134
           L F++DG+  + WVW S F EGD  +++            I R SDR++AL+PHCSRG  
Sbjct: 73  LEFELDGKSIRAWVWVSVFKEGDEVEIVAEPFGQIWHAFGIRRVSDRIVALHPHCSRGRY 132

Query: 135 AHWRSVLNAWL-IWVVFLISIVVFTCLGFVLGFTAE 169
           AH+++    W+ +   FL+   +F  +  VL F+ E
Sbjct: 133 AHYKATARWWIGLTGAFLLCFNIFAVI--VLYFSDE 166


>ref|YP_001893689.1| hypothetical protein Bphyt_0013 [Burkholderia phytofirmans PsJN]
 gb|ACD14465.1| conserved hypothetical protein [Burkholderia phytofirmans PsJN]
          Length = 245

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 51/131 (38%), Positives = 76/131 (58%)

Query: 15  MVSGVIKNYECTRAEASFVLTRNDQRVMEMSAVANAFAGMGGVATSQMANASNIEEVADY 74
           ++ G I N   TR    F  T +D++ M  +A+A   AG+GG+A      A +  E AD 
Sbjct: 13  LLRGRITNLRKTRRSQDFFFTDSDRKKMGATAIAAGLAGLGGIAVGLGGMAMDTTEEADL 72

Query: 75  LSFDIDGEKYKGWVWRSPFAEGDMADVIYRRTINGKELVAIARPSDRMIALYPHCSRGVL 134
           L FD+ G+  K WVW+S F EGD  +V+  +  +  +   I R SD+++AL+PHCSRG  
Sbjct: 73  LEFDLAGKPIKAWVWQSVFDEGDEVEVVAEQWGDTWQGYGIRRISDKIVALHPHCSRGRY 132

Query: 135 AHWRSVLNAWL 145
           AH+++ L  WL
Sbjct: 133 AHYKASLRLWL 143


>ref|YP_002908729.1| hypothetical protein bglu_2g11000 [Burkholderia glumae BGR1]
 gb|ACR31494.1| Hypothetical protein bglu_2g11000 [Burkholderia glumae BGR1]
          Length = 248

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 55/149 (36%), Positives = 83/149 (55%), Gaps = 8/149 (5%)

Query: 15  MVSGVIKNYECTRAEASFVLTRNDQRVMEMSAVANAFAGMGGVATSQMANASNIEEVADY 74
           ++ G I+N   TR    F     D+  M  +A+A   AG+GG+AT     A    E AD 
Sbjct: 13  LLHGRIQNLRKTRLNHDFFFDAADRAKMGATAIAAGLAGLGGIATGLSGMAMYTTEEADL 72

Query: 75  LSFDIDGEKYKGWVWRSPFAEGDMADVIYRRTINGKELVAIARPSDRMIALYPHCSRGVL 134
           L FD+DG+  + WVW+S F EGD  +V+  R  +  +   + R SD ++AL+PHCSRG  
Sbjct: 73  LEFDLDGKSVRAWVWQSVFDEGDDVEVVAERIGDIWQGYGVRRTSDNIVALHPHCSRGRR 132

Query: 135 AHWRSVLNAW-------LIWVVFLISIVV 156
           AH+++ + +W       LI +V LIS ++
Sbjct: 133 AHYKAAV-SWGLKIGLGLIIIVNLISAIM 160


>ref|ZP_04894991.1| conserved hypothetical protein [Burkholderia pseudomallei Pasteur
           52237]
 gb|EDO91829.1| conserved hypothetical protein [Burkholderia pseudomallei Pasteur
           52237]
          Length = 230

 Score = 92.0 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 53/147 (36%), Positives = 87/147 (59%), Gaps = 3/147 (2%)

Query: 15  MVSGVIKNYECTRAEASFVLTRNDQRVMEMSAVANAFAGMGGVATSQMANASNIEEVADY 74
           M+ G +KN++  R+   F+L+  ++  + ++AVA+A  G GG     +A+ +  +E AD 
Sbjct: 1   MLRGRLKNFKKERSTGDFLLSDTERSAVGLTAVASALVGSGGAIG--LASLAGTKEEADK 58

Query: 75  LSFDIDGEKYKGWVWRSPFAEGDMADVIYRRTINGK-ELVAIARPSDRMIALYPHCSRGV 133
           + F++DG+ + GW+  SPF + +  +V+   + +G   + AI RPSDR IALYPHCSRG 
Sbjct: 59  VQFELDGKFFTGWLMWSPFQDEEEVEVVAEPSKDGTYRVFAILRPSDRTIALYPHCSRGK 118

Query: 134 LAHWRSVLNAWLIWVVFLISIVVFTCL 160
            AH+R+    +L     + SI  F  L
Sbjct: 119 RAHFRNSFKWFLRGFSVIFSIYFFVML 145


>ref|YP_002910671.1| hypothetical protein bglu_1g07800 [Burkholderia glumae BGR1]
 gb|ACR27967.1| Hypothetical protein bglu_1g07800 [Burkholderia glumae BGR1]
          Length = 252

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 59/155 (38%), Positives = 87/155 (56%), Gaps = 2/155 (1%)

Query: 15  MVSGVIKNYECTRAEASFVLTRNDQRVMEMSAVANAFAGMGGVATSQMANASNIEEVADY 74
           ++ G I+N   TR    F  +  D+  M  +A+A    G+GGVAT     A +  E AD 
Sbjct: 13  LLKGRIRNLRKTRRNQDFFFSAADRARMGATAIAAGLGGLGGVATGLSGMAMDTTEEADL 72

Query: 75  LSFDIDGEKYKGWVWRSPFAEGDMADVIYRRTINGKELVAIARPSDRMIALYPHCSRGVL 134
           L FD+DGE  + WVWRS F+E D   V+   T    +   + RPSD ++AL+PHCSRG  
Sbjct: 73  LEFDLDGEAIRAWVWRSVFSEDDEVQVVAEWTETHWQGYGLYRPSDAIVALHPHCSRGRY 132

Query: 135 AHWRSVLNAWLIWVVFLISIVVFTCLGFVLGFTAE 169
           AH+R+  + +L  ++ LI I  F  L F+ G++ +
Sbjct: 133 AHYRAAFSIYLKCMIPLI-IAAFGML-FIAGYSMD 165