BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5207.p (212 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774179.1| hypothetical protein Hsero_0752 [Herbaspiril... 374 e-102 ref|YP_003774180.1| hypothetical protein Hsero_0753 [Herbaspiril... 345 3e-93 ref|YP_003774178.1| hypothetical protein Hsero_0751 [Herbaspiril... 340 7e-92 ref|YP_003774181.1| hypothetical protein Hsero_0754 [Herbaspiril... 286 1e-75 ref|ZP_08139716.1| hypothetical protein G1E_10498 [Pseudomonas s... 75 7e-12 >ref|YP_003774179.1| hypothetical protein Hsero_0752 [Herbaspirillum seropedicae SmR1] gb|ADJ62271.1| hypothetical protein Hsero_0752 [Herbaspirillum seropedicae SmR1] Length = 333 Score = 374 bits (959), Expect = e-102, Method: Composition-based stats. Identities = 177/212 (83%), Positives = 188/212 (88%) Query: 1 MLAGGIIAVGLFALYDYLLPRDTPVRFNRNTRKIYVYEFTASLQRLKRWRTEIKIYDWDQ 60 ML GG + VGLFAL+D LLPRDTPVRFNRNTRKIY YE+ ASLQRL+RWRTEIKIYDWDQ Sbjct: 103 MLVGGSVVVGLFALHDCLLPRDTPVRFNRNTRKIYAYEYKASLQRLQRWRTEIKIYDWDQ 162 Query: 61 IEAEIAKSSVFTGKTYSVRHELVLVICKPATNEVIDRISLKGNDVGAETLYQLWSYVRRF 120 +EAEIAK S TGKTY VRHELVLVICK TNEVIDRI+LKGNDV ETLYQLWSY+RRF Sbjct: 163 VEAEIAKVSASTGKTYVVRHELVLVICKAGTNEVIDRIALKGNDVTVETLYQLWSYIRRF 222 Query: 121 MAYGPSRIPALMTREQSVGFVKSLFHFMPYLSPTEEGRRFRSKMRWLDYSIIFLTIWFFW 180 MAYGP+RIP L R Q VG V LFHFMPY+SPTEEGRRFRSKMRWLDY IIFLTIWFFW Sbjct: 223 MAYGPARIPELTVRVQGVGLVSCLFHFMPYISPTEEGRRFRSKMRWLDYPIIFLTIWFFW 282 Query: 181 IWLPLGLCHYVAMKCAPEPCWPAEVDEESRRG 212 IWLPLG+CHY+AMKCAPEP WPAEVDEESRRG Sbjct: 283 IWLPLGICHYIAMKCAPEPHWPAEVDEESRRG 314 >ref|YP_003774180.1| hypothetical protein Hsero_0753 [Herbaspirillum seropedicae SmR1] gb|ADJ62272.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 339 Score = 345 bits (884), Expect = 3e-93, Method: Composition-based stats. Identities = 166/198 (83%), Positives = 177/198 (89%) Query: 1 MLAGGIIAVGLFALYDYLLPRDTPVRFNRNTRKIYVYEFTASLQRLKRWRTEIKIYDWDQ 60 ML G +A LFAL+D LLPRDTPVRFNRNTRKIYVYE+TASLQRL+RWRTEIKIYDWDQ Sbjct: 103 MLLGATLAASLFALHDCLLPRDTPVRFNRNTRKIYVYEYTASLQRLQRWRTEIKIYDWDQ 162 Query: 61 IEAEIAKSSVFTGKTYSVRHELVLVICKPATNEVIDRISLKGNDVGAETLYQLWSYVRRF 120 +EAEIAK S TGKTY VRHELVLVICK +NEVIDRISLKGNDV ETLYQLWSY+RRF Sbjct: 163 VEAEIAKVSASTGKTYVVRHELVLVICKAGSNEVIDRISLKGNDVTVETLYQLWSYIRRF 222 Query: 121 MAYGPSRIPALMTREQSVGFVKSLFHFMPYLSPTEEGRRFRSKMRWLDYSIIFLTIWFFW 180 MAYGP+RIP L R Q VGFV SLFHFMPY+SPTEEGRRFRSKMRWLDY IIFLTIWFFW Sbjct: 223 MAYGPARIPDLKARMQGVGFVSSLFHFMPYISPTEEGRRFRSKMRWLDYPIIFLTIWFFW 282 Query: 181 IWLPLGLCHYVAMKCAPE 198 IWLPLGLC+Y+AMKCAPE Sbjct: 283 IWLPLGLCYYIAMKCAPE 300 >ref|YP_003774178.1| hypothetical protein Hsero_0751 [Herbaspirillum seropedicae SmR1] gb|ADJ62270.1| hypothetical protein Hsero_0751 [Herbaspirillum seropedicae SmR1] Length = 249 Score = 340 bits (873), Expect = 7e-92, Method: Composition-based stats. Identities = 165/196 (84%), Positives = 175/196 (89%) Query: 15 YDYLLPRDTPVRFNRNTRKIYVYEFTASLQRLKRWRTEIKIYDWDQIEAEIAKSSVFTGK 74 +D LLPRDTPVRFNRNTRKIYVYE+TASL+RL+RWR EIKIYDWD IEAEIAK S FTGK Sbjct: 49 HDCLLPRDTPVRFNRNTRKIYVYEYTASLRRLQRWRKEIKIYDWDNIEAEIAKVSGFTGK 108 Query: 75 TYSVRHELVLVICKPATNEVIDRISLKGNDVGAETLYQLWSYVRRFMAYGPSRIPALMTR 134 Y VRHELVLVICK TNEVIDRISLKGNDV ETLYQLWSYVRRFMAYGP+RIP L R Sbjct: 109 AYVVRHELVLVICKAGTNEVIDRISLKGNDVTVETLYQLWSYVRRFMAYGPARIPDLKAR 168 Query: 135 EQSVGFVKSLFHFMPYLSPTEEGRRFRSKMRWLDYSIIFLTIWFFWIWLPLGLCHYVAMK 194 Q V FV SLFHFMPY+SPTEEGRRFRSKMRWLDY IIFLTIWFFWIWLPLG+C+Y+AMK Sbjct: 169 VQGVSFVSSLFHFMPYISPTEEGRRFRSKMRWLDYPIIFLTIWFFWIWLPLGICNYIAMK 228 Query: 195 CAPEPCWPAEVDEESR 210 CAPEP WPAE+D ESR Sbjct: 229 CAPEPKWPAEIDAESR 244 >ref|YP_003774181.1| hypothetical protein Hsero_0754 [Herbaspirillum seropedicae SmR1] gb|ADJ62273.1| hypothetical protein Hsero_0754 [Herbaspirillum seropedicae SmR1] Length = 321 Score = 286 bits (732), Expect = 1e-75, Method: Composition-based stats. Identities = 132/212 (62%), Positives = 162/212 (76%) Query: 1 MLAGGIIAVGLFALYDYLLPRDTPVRFNRNTRKIYVYEFTASLQRLKRWRTEIKIYDWDQ 60 ML G + +YD LPRDTPVRFNRNT+K+Y YE+ ASL KRW E+K+YDW Sbjct: 101 MLLGISVWAFFLIIYDCRLPRDTPVRFNRNTQKVYSYEYAASLSSFKRWHKEVKVYDWSC 160 Query: 61 IEAEIAKSSVFTGKTYSVRHELVLVICKPATNEVIDRISLKGNDVGAETLYQLWSYVRRF 120 +EAE+AK S F+GK Y VR+EL LVI KP T+EVIDRI+LK NDV TLY+ WSY+RRF Sbjct: 161 VEAEVAKFSGFSGKAYIVRYELHLVIGKPGTHEVIDRIALKRNDVTGLTLYERWSYLRRF 220 Query: 121 MAYGPSRIPALMTREQSVGFVKSLFHFMPYLSPTEEGRRFRSKMRWLDYSIIFLTIWFFW 180 MA G R+P L R+Q +GF+KSLF +MPYLSPT+EGRR+R KMRW+DY + + +WFFW Sbjct: 221 MADGTGRLPKLEVRQQELGFLKSLFSYMPYLSPTDEGRRYRKKMRWVDYCLALVLVWFFW 280 Query: 181 IWLPLGLCHYVAMKCAPEPCWPAEVDEESRRG 212 +WLPLGLCHYVAM+CAP P WP ++D ESR G Sbjct: 281 LWLPLGLCHYVAMRCAPAPQWPPDLDGESRSG 312 >ref|ZP_08139716.1| hypothetical protein G1E_10498 [Pseudomonas sp. TJI-51] gb|EGB98995.1| hypothetical protein G1E_10498 [Pseudomonas sp. TJI-51] Length = 220 Score = 74.7 bits (182), Expect = 7e-12, Method: Composition-based stats. Identities = 47/131 (35%), Positives = 65/131 (49%), Gaps = 6/131 (4%) Query: 1 MLAGGIIAVGLFALYDYLLPRDTPVRFNRNTRKIYVYEFTAS-LQRLKRWRTEIKIYDWD 59 +LAGGI A F PRD P+RFNR +KIY Y F W+ E YDW Sbjct: 53 LLAGGIWASAFFIRISLSPPRDEPIRFNRKRKKIYAYNFKHCWWNPFGTWKVETVCYDWS 112 Query: 60 QIEAE-IAKSSVFTGKTYSVRHELVLVICKPATNEVIDRISLKGNDVGAETLYQLWSYVR 118 Q+ AE + + + ++L I P TN VIDR L + +GA+ W+Y+ Sbjct: 113 QVRAERWFQRGMLPNGVPIFKWGVMLSIVAPGTNNVIDRFPL--STMGADQ--HAWAYIC 168 Query: 119 RFMAYGPSRIP 129 +M +GPS +P Sbjct: 169 TYMQHGPSALP 179