BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5205.p (301 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774181.1| hypothetical protein Hsero_0754 [Herbaspiril... 271 7e-71 ref|YP_003774179.1| hypothetical protein Hsero_0752 [Herbaspiril... 244 8e-63 ref|YP_003774180.1| hypothetical protein Hsero_0753 [Herbaspiril... 243 2e-62 ref|YP_003774178.1| hypothetical protein Hsero_0751 [Herbaspiril... 216 4e-54 ref|YP_001401462.1| hypothetical protein YpsIP31758_2493 [Yersin... 78 2e-12 >ref|YP_003774181.1| hypothetical protein Hsero_0754 [Herbaspirillum seropedicae SmR1] gb|ADJ62273.1| hypothetical protein Hsero_0754 [Herbaspirillum seropedicae SmR1] Length = 321 Score = 271 bits (694), Expect = 7e-71, Method: Composition-based stats. Identities = 140/310 (45%), Positives = 195/310 (62%), Gaps = 16/310 (5%) Query: 2 STSRFNPPNSLWYEDLPARAAMA--EEEVSVMALQEDVIGVDQDKLEISRASSTLRGG-- 57 S SRF+P N LWYEDL RA+ EE++ L+ED+ VD + +EISR SS LRGG Sbjct: 3 SGSRFSPSNPLWYEDLAPRASEINFEEKLDGPLLEEDLNHVDNNYVEISRTSSVLRGGGL 62 Query: 58 ------FIFIGMAVLLILCWFAPHVFTSIFTPPRSALVITILTIQNLALAGYSLFLIWLD 111 F F+G ++ ++ FT I P L + +L L ++ ++ FLI D Sbjct: 63 FTGLIFFSFVGTVIIPLISTIGLQFFTLI--PLLGVLAVVML----LGISVWAFFLIIYD 116 Query: 112 CRIPRDLPVRFDRRAGKIHVQDFSLSLNPFAHRKLLLKTFDWTDIEAELTKQAGFNGKVY 171 CR+PRD PVRF+R K++ +++ SL+ F +K +DW+ +EAE+ K +GF+GK Y Sbjct: 117 CRLPRDTPVRFNRNTQKVYSYEYAASLSSFKRWHKEVKVYDWSCVEAEVAKFSGFSGKAY 176 Query: 172 MVRYALVLVVCRPGTTEALERITLRGNDIATQGLQSIWSYVRRYMEQGPSNLPTLHVRER 231 +VRY L LV+ +PGT E ++RI L+ ND+ L WSY+RR+M G LP L VR++ Sbjct: 177 IVRYELHLVIGKPGTHEVIDRIALKRNDVTGLTLYERWSYLRRFMADGTGRLPKLEVRQQ 236 Query: 232 RISLLNSLFFYIPYLAPGEEGRCYRHHMGAVELILAFLMIWFFWIWLPLGLCYYVAMRCA 291 + L SLF Y+PYL+P +EGR YR M V+ LA +++WFFW+WLPLGLC+YVAMRCA Sbjct: 237 ELGFLKSLFSYMPYLSPTDEGRRYRKKMRWVDYCLALVLVWFFWLWLPLGLCHYVAMRCA 296 Query: 292 PESSWPEGLD 301 P WP LD Sbjct: 297 PAPQWPPDLD 306 >ref|YP_003774179.1| hypothetical protein Hsero_0752 [Herbaspirillum seropedicae SmR1] gb|ADJ62271.1| hypothetical protein Hsero_0752 [Herbaspirillum seropedicae SmR1] Length = 333 Score = 244 bits (624), Expect = 8e-63, Method: Composition-based stats. Identities = 126/307 (41%), Positives = 187/307 (60%), Gaps = 10/307 (3%) Query: 2 STSRFNPPNSLWYEDLPARAAMAE--EEVSVMALQEDVIGVDQDKLEISRASSTLRGGFI 59 S +RF P N WYEDL AR + + E + L ED+ +D++ LEISR SS +RG + Sbjct: 5 SRTRFTPKNPSWYEDLAARESEIDLSERLDSPVLDEDLNHIDENYLEISRTSSVIRGLGV 64 Query: 60 FIGMAVLL-ILCWFAPHVFTSIFTPPRSALVITILTIQN-LALAGYSL---FLIWLDCRI 114 IG+ L + +F P + I+ R + L + + L G S+ DC + Sbjct: 65 LIGILFFLSAVGFFIPFL---IYQWDRFFAIAPFLCVYYCVMLVGGSVVVGLFALHDCLL 121 Query: 115 PRDLPVRFDRRAGKIHVQDFSLSLNPFAHRKLLLKTFDWTDIEAELTKQAGFNGKVYMVR 174 PRD PVRF+R KI+ ++ SL + +K +DW +EAE+ K + GK Y+VR Sbjct: 122 PRDTPVRFNRNTRKIYAYEYKASLQRLQRWRTEIKIYDWDQVEAEIAKVSASTGKTYVVR 181 Query: 175 YALVLVVCRPGTTEALERITLRGNDIATQGLQSIWSYVRRYMEQGPSNLPTLHVRERRIS 234 + LVLV+C+ GT E ++RI L+GND+ + L +WSY+RR+M GP+ +P L VR + + Sbjct: 182 HELVLVICKAGTNEVIDRIALKGNDVTVETLYQLWSYIRRFMAYGPARIPELTVRVQGVG 241 Query: 235 LLNSLFFYIPYLAPGEEGRCYRHHMGAVELILAFLMIWFFWIWLPLGLCYYVAMRCAPES 294 L++ LF ++PY++P EEGR +R M ++ + FL IWFFWIWLPLG+C+Y+AM+CAPE Sbjct: 242 LVSCLFHFMPYISPTEEGRRFRSKMRWLDYPIIFLTIWFFWIWLPLGICHYIAMKCAPEP 301 Query: 295 SWPEGLD 301 WP +D Sbjct: 302 HWPAEVD 308 >ref|YP_003774180.1| hypothetical protein Hsero_0753 [Herbaspirillum seropedicae SmR1] gb|ADJ62272.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 339 Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats. Identities = 126/298 (42%), Positives = 183/298 (61%), Gaps = 12/298 (4%) Query: 4 SRFNPPNSLWYEDLPARAAMAE--EEVSVMALQEDVIGVDQDKLEISRASSTLRGGFIFI 61 SRF P N WYEDL AR + + E + AL ED+ VD++ LEISR SS +RG + I Sbjct: 7 SRFTPKNPSWYEDLAARESEIDLNEPLDSPALDEDLNHVDENYLEISRTSSVIRGLGVLI 66 Query: 62 GMAVLLILCWFA-PHVFTS-----IFTPPRSALVITILTIQNLALAGYSLFLIWLDCRIP 115 G+ L F P + + P T+L LA + ++L DC +P Sbjct: 67 GIMYFLFAASFLFPMLIEQWHDYFVTAPWFGLYYCTMLLGATLAASLFALH----DCLLP 122 Query: 116 RDLPVRFDRRAGKIHVQDFSLSLNPFAHRKLLLKTFDWTDIEAELTKQAGFNGKVYMVRY 175 RD PVRF+R KI+V +++ SL + +K +DW +EAE+ K + GK Y+VR+ Sbjct: 123 RDTPVRFNRNTRKIYVYEYTASLQRLQRWRTEIKIYDWDQVEAEIAKVSASTGKTYVVRH 182 Query: 176 ALVLVVCRPGTTEALERITLRGNDIATQGLQSIWSYVRRYMEQGPSNLPTLHVRERRISL 235 LVLV+C+ G+ E ++RI+L+GND+ + L +WSY+RR+M GP+ +P L R + + Sbjct: 183 ELVLVICKAGSNEVIDRISLKGNDVTVETLYQLWSYIRRFMAYGPARIPDLKARMQGVGF 242 Query: 236 LNSLFFYIPYLAPGEEGRCYRHHMGAVELILAFLMIWFFWIWLPLGLCYYVAMRCAPE 293 ++SLF ++PY++P EEGR +R M ++ + FL IWFFWIWLPLGLCYY+AM+CAPE Sbjct: 243 VSSLFHFMPYISPTEEGRRFRSKMRWLDYPIIFLTIWFFWIWLPLGLCYYIAMKCAPE 300 >ref|YP_003774178.1| hypothetical protein Hsero_0751 [Herbaspirillum seropedicae SmR1] gb|ADJ62270.1| hypothetical protein Hsero_0751 [Herbaspirillum seropedicae SmR1] Length = 249 Score = 216 bits (549), Expect = 4e-54, Method: Composition-based stats. Identities = 94/191 (49%), Positives = 136/191 (71%) Query: 111 DCRIPRDLPVRFDRRAGKIHVQDFSLSLNPFAHRKLLLKTFDWTDIEAELTKQAGFNGKV 170 DC +PRD PVRF+R KI+V +++ SL + +K +DW +IEAE+ K +GF GK Sbjct: 50 DCLLPRDTPVRFNRNTRKIYVYEYTASLRRLQRWRKEIKIYDWDNIEAEIAKVSGFTGKA 109 Query: 171 YMVRYALVLVVCRPGTTEALERITLRGNDIATQGLQSIWSYVRRYMEQGPSNLPTLHVRE 230 Y+VR+ LVLV+C+ GT E ++RI+L+GND+ + L +WSYVRR+M GP+ +P L R Sbjct: 110 YVVRHELVLVICKAGTNEVIDRISLKGNDVTVETLYQLWSYVRRFMAYGPARIPDLKARV 169 Query: 231 RRISLLNSLFFYIPYLAPGEEGRCYRHHMGAVELILAFLMIWFFWIWLPLGLCYYVAMRC 290 + +S ++SLF ++PY++P EEGR +R M ++ + FL IWFFWIWLPLG+C Y+AM+C Sbjct: 170 QGVSFVSSLFHFMPYISPTEEGRRFRSKMRWLDYPIIFLTIWFFWIWLPLGICNYIAMKC 229 Query: 291 APESSWPEGLD 301 APE WP +D Sbjct: 230 APEPKWPAEID 240 >ref|YP_001401462.1| hypothetical protein YpsIP31758_2493 [Yersinia pseudotuberculosis IP 31758] gb|ABS49087.1| hypothetical protein YpsIP31758_2493 [Yersinia pseudotuberculosis IP 31758] Length = 273 Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 59/222 (26%), Positives = 102/222 (45%), Gaps = 19/222 (8%) Query: 2 STSRFNPPNSLWYEDLPARAAMAEEEVSVMALQEDVIGVDQDKLEISRASSTLRGG---- 57 S SR P W EDLP + ++ + E ++ +EI R + GG Sbjct: 27 SFSRLVPQVKYWEEDLPEQHEDQPTAPRLIRVNE----INDTWMEIPRYENIWWGGLWLF 82 Query: 58 -FIFIGMAVLLILCWFAPHVFTSIFTPPRSALVITILTIQNLALAGYSLFLIWLDCRIPR 116 F+F+ +L ++ P ++ T + I N +L F + +PR Sbjct: 83 SFVFLIPFILSMMFLQLPGFYSKSPTEMK-----FFFGISNFSLLSLIFFCFRMALFVPR 137 Query: 117 DLPVRFDRRAGKIHVQDFSLS-LNPFAHRKLLLKTFDWTDIEAELTKQAGFNGKVYMVRY 175 PVRF+R+ K++V + S NP++ ++K FDW DI E+ +Q G Y + Sbjct: 138 GTPVRFNRKRQKVYVYEHQRSNWNPWSRWPTVIKVFDWADIHGEMVRQVG----RYDSGH 193 Query: 176 ALVLVVCRPGTTEALERITLRGNDIATQGLQSIWSYVRRYME 217 L VC+PGT E ++R L + ++ ++ +WS+ +YM+ Sbjct: 194 RLSCAVCKPGTYEVVDRFILSWTEGDSRVIRGLWSHCCQYMQ 235