BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5202.p (328 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774184.1| hypothetical protein Hsero_0757 [Herbaspiril... 534 e-150 ref|YP_003777407.1| hypothetical protein Hsero_4028 [Herbaspiril... 523 e-146 ref|YP_004750721.1| hypothetical protein CFU_0059 [Collimonas fu... 409 e-112 ref|YP_003910948.1| type VI secretion-associated protein, BMA_A0... 330 2e-88 ref|YP_004232080.1| type VI secretion-associated protein [Burkho... 329 4e-88 >ref|YP_003774184.1| hypothetical protein Hsero_0757 [Herbaspirillum seropedicae SmR1] gb|ADJ62276.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 328 Score = 534 bits (1375), Expect = e-150, Method: Composition-based stats. Identities = 282/328 (85%), Positives = 302/328 (92%) Query: 1 MSATGTPIKIGYFGKIPARGDFIKATDNAALITLLDNWLAQTMELLSRDARWKIIYDGVK 60 MSATGTPIK+GYFGKIP RGDFIKATDNA+LITLLDNWLAQTME+L+RD RWKIIYDGVK Sbjct: 1 MSATGTPIKVGYFGKIPTRGDFIKATDNASLITLLDNWLAQTMEMLARDPRWKIIYDGVK 60 Query: 61 PLHFVVMGPRSRRAVAGHLRASGDQSQRRFPFISMSAFDIEDPVAFVSNSPLILSRLWSR 120 PLHFVVMGPRSRRAVAGHLRAS DQSQRRFPFISMSA ++EDP AFV N PLILSRLW+R Sbjct: 61 PLHFVVMGPRSRRAVAGHLRASSDQSQRRFPFISMSAIEVEDPGAFVRNGPLILSRLWTR 120 Query: 121 LESLTQSVLTAPDPAQPLQTLASTTLELDINSAGYTAAFADFLDLQTTGSLQQMLAEAGF 180 LE+LT VL+A DPA PLQTLA+TTLELDINSAGY AAFADFLD+QT G LQQML +AGF Sbjct: 121 LETLTNGVLSANDPAAPLQTLATTTLELDINSAGYNAAFADFLDMQTLGGLQQMLEQAGF 180 Query: 181 TGNLRQLLLALGLLLQPVMASTSSRLDKNLILPLPRDPMYRSLVASFWMHLITPFLTRAD 240 TG RQLLLALGLLLQPVMASTSSRLDKNLILPLPRDPMYR+LVASFWM+LITPFL+RAD Sbjct: 181 TGTPRQLLLALGLLLQPVMASTSSRLDKNLILPLPRDPMYRALVASFWMNLITPFLSRAD 240 Query: 241 FELALFLTQLDDQPAMFLGFSGASPRTLHSVMDIQAGAEHNIPFDDADWVEEHVGSDYGI 300 FELALFLT LD+QP+M LGFSGASPRTLHSV+D QAGAEHNI FD ADW+EEHV SDYGI Sbjct: 241 FELALFLTILDEQPSMILGFSGASPRTLHSVLDSQAGAEHNIAFDQADWIEEHVSSDYGI 300 Query: 301 QKLSSYLAHPDLSLTSALASFREAFIGA 328 QKLSSYL+HP LSL SAL SFREAFIGA Sbjct: 301 QKLSSYLSHPGLSLKSALDSFREAFIGA 328 >ref|YP_003777407.1| hypothetical protein Hsero_4028 [Herbaspirillum seropedicae SmR1] gb|ADJ65499.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 330 Score = 523 bits (1348), Expect = e-146, Method: Composition-based stats. Identities = 278/330 (84%), Positives = 297/330 (90%), Gaps = 2/330 (0%) Query: 1 MSATGTPIKIGYFGKIPARGDFIKATDNAALITLLDNWLAQTMELLSRDARWKIIYDGVK 60 MSATGT IKIGYFGKIPARGDFIKATD AALITLLDNWLAQ MELLSRDARWKIIYDGVK Sbjct: 1 MSATGTHIKIGYFGKIPARGDFIKATDQAALITLLDNWLAQAMELLSRDARWKIIYDGVK 60 Query: 61 PLHFVVMGPRSRRAVAGHLRASGDQSQRRFPFISMSAFDIEDPVAFVSNSPLILSRLWSR 120 PLHFVVMGPRSRRAVAGHLRAS DQSQRRFPFISMSAFDI+DPVAFV NSPLIL+RLWSR Sbjct: 61 PLHFVVMGPRSRRAVAGHLRASSDQSQRRFPFISMSAFDIDDPVAFVGNSPLILARLWSR 120 Query: 121 LESLTQSVLTAPDPAQPLQTLASTTLELDINSAGYT--AAFADFLDLQTTGSLQQMLAEA 178 +ES Q VLT PDP Q LQ +ASTT+ELDI+S GY AAF DFL+L TTGSLQQMLA+A Sbjct: 121 MESQIQEVLTTPDPGQSLQAMASTTVELDIDSNGYGYGAAFTDFLELHTTGSLQQMLADA 180 Query: 179 GFTGNLRQLLLALGLLLQPVMASTSSRLDKNLILPLPRDPMYRSLVASFWMHLITPFLTR 238 GF GNLRQLLLALGLLL PVM STSSRLDKNLILPLP D MYR LVASFWMHLITPFLTR Sbjct: 181 GFNGNLRQLLLALGLLLHPVMVSTSSRLDKNLILPLPHDTMYRGLVASFWMHLITPFLTR 240 Query: 239 ADFELALFLTQLDDQPAMFLGFSGASPRTLHSVMDIQAGAEHNIPFDDADWVEEHVGSDY 298 ADFEL+LFLT++++QP MFLGFSGASPRTLHSVMD AGAEHNI FDDA+WVEEHVG +Y Sbjct: 241 ADFELSLFLTRMEEQPCMFLGFSGASPRTLHSVMDTVAGAEHNISFDDAEWVEEHVGGNY 300 Query: 299 GIQKLSSYLAHPDLSLTSALASFREAFIGA 328 G+QKLSSYLAHP+LSL SA+ SF +AF GA Sbjct: 301 GVQKLSSYLAHPELSLRSAIDSFHDAFTGA 330 >ref|YP_004750721.1| hypothetical protein CFU_0059 [Collimonas fungivorans Ter331] gb|AEK59898.1| hypothetical protein CFU_0059 [Collimonas fungivorans Ter331] Length = 328 Score = 409 bits (1051), Expect = e-112, Method: Composition-based stats. Identities = 200/328 (60%), Positives = 253/328 (77%) Query: 1 MSATGTPIKIGYFGKIPARGDFIKATDNAALITLLDNWLAQTMELLSRDARWKIIYDGVK 60 MS IGYFGKIP+RGDFIKATDN L+++LD WLAQ M+LLS + RWKI YD V Sbjct: 1 MSVGEKLANIGYFGKIPSRGDFIKATDNMPLVSILDEWLAQAMDLLSAEPRWKIAYDAVS 60 Query: 61 PLHFVVMGPRSRRAVAGHLRASGDQSQRRFPFISMSAFDIEDPVAFVSNSPLILSRLWSR 120 PLHF +GPRS+RA+AGHL AS DQ+ RRFPF+++S +I++P F + SP+ SRLW+R Sbjct: 61 PLHFAFIGPRSKRAIAGHLIASNDQANRRFPFLAVSTMEIDEPQEFTAKSPMAFSRLWNR 120 Query: 121 LESLTQSVLTAPDPAQPLQTLASTTLELDINSAGYTAAFADFLDLQTTGSLQQMLAEAGF 180 LES V+ A DPA LQ L +T + L + S Y AAF DF+++QT G L+ ML AGF Sbjct: 121 LESQASEVVAATDPAISLQNLTATGIPLQLGSGAYHAAFTDFMEIQTVGGLENMLHSAGF 180 Query: 181 TGNLRQLLLALGLLLQPVMASTSSRLDKNLILPLPRDPMYRSLVASFWMHLITPFLTRAD 240 G+LR L+LALG+LLQPVMAS+SSRL+K+L++PLP DPMYR+LVAS+W+HLITPFL R + Sbjct: 181 KGSLRHLVLALGILLQPVMASSSSRLEKSLVMPLPDDPMYRNLVASYWLHLITPFLLRGN 240 Query: 241 FELALFLTQLDDQPAMFLGFSGASPRTLHSVMDIQAGAEHNIPFDDADWVEEHVGSDYGI 300 FELA F+T+++D+P+M +GFSGASPRTL ++MD Q EH+I F+DA WVEE V SDY I Sbjct: 241 FELATFVTKINDRPSMVIGFSGASPRTLQAIMDPQVALEHHISFEDASWVEEQVKSDYSI 300 Query: 301 QKLSSYLAHPDLSLTSALASFREAFIGA 328 K++SYLA P LSL SA SFR+AFIGA Sbjct: 301 TKIASYLAQPTLSLKSAHDSFRDAFIGA 328 >ref|YP_003910948.1| type VI secretion-associated protein, BMA_A0400 family [Burkholderia sp. CCGE1003] gb|ADN61657.1| type VI secretion-associated protein, BMA_A0400 family [Burkholderia sp. CCGE1003] Length = 330 Score = 330 bits (846), Expect = 2e-88, Method: Composition-based stats. Identities = 162/323 (50%), Positives = 226/323 (69%), Gaps = 3/323 (0%) Query: 9 KIGYFGKIPARGDFIKATDNAALITLLDNWLAQTMELLSRDARWKIIYDGVKPLHFVVMG 68 +I YFGKIP+RGDF+K+ N L+ LD W+A+ MELL+ D RWKI+Y+ KP+HF +G Sbjct: 8 QIAYFGKIPSRGDFVKSAHNPQLLATLDRWIAEAMELLTDDPRWKIVYENAKPMHFAFLG 67 Query: 69 PRSRRAVAGHLRASGDQSQRRFPFISMSAFDIEDPVAFVSNSPLILSRLWSRLESLTQSV 128 RS+ A+AGH+ AS DQS RRFPF++ +A ++E P+ F+++SPL +RLWSR+ + + + Sbjct: 68 SRSKLAIAGHMVASHDQSSRRFPFLAATALEVEKPLTFLAHSPLAFARLWSRVSAQMKPL 127 Query: 129 LTAPDPAQPLQTLASTTLELDINSAG---YTAAFADFLDLQTTGSLQQMLAEAGFTGNLR 185 L A +PA LQ L T + ++I + F DF++ QT L+QML +G LR Sbjct: 128 LGASEPAGALQALGETQVPIEIGGGPGNPHDGTFNDFVEHQTLAGLEQMLLASGHPVRLR 187 Query: 186 QLLLALGLLLQPVMASTSSRLDKNLILPLPRDPMYRSLVASFWMHLITPFLTRADFELAL 245 +LALG LL+PVM S SS L++ L LPLP DP YRSLVA+FW+ LI PF+ +ADFELA+ Sbjct: 188 GAMLALGSLLRPVMQSGSSHLERGLTLPLPNDPFYRSLVAAFWLELIAPFVAQADFELAI 247 Query: 246 FLTQLDDQPAMFLGFSGASPRTLHSVMDIQAGAEHNIPFDDADWVEEHVGSDYGIQKLSS 305 F+ + ++ + +GF+GAS +TLHSV+D QA A HNI DD +W++EH +D+GI KL S Sbjct: 248 FIGTIAERERLIIGFNGASAKTLHSVVDPQAYAAHNIDIDDPEWIDEHAQNDHGISKLVS 307 Query: 306 YLAHPDLSLTSALASFREAFIGA 328 YL P LSL ++ +FREAF GA Sbjct: 308 YLDQPQLSLRVSIDTFREAFTGA 330 >ref|YP_004232080.1| type VI secretion-associated protein [Burkholderia sp. CCGE1001] gb|ADX59020.1| type VI secretion-associated protein, BMA_A0400 family [Burkholderia sp. CCGE1001] Length = 330 Score = 329 bits (844), Expect = 4e-88, Method: Composition-based stats. Identities = 162/323 (50%), Positives = 226/323 (69%), Gaps = 3/323 (0%) Query: 9 KIGYFGKIPARGDFIKATDNAALITLLDNWLAQTMELLSRDARWKIIYDGVKPLHFVVMG 68 +I YFGKIP+RGDF+K+ N L+ LD W+A+ MELL+ D RWKI+Y+ KP+HF +G Sbjct: 8 QIAYFGKIPSRGDFVKSPHNPQLLATLDRWIAEAMELLTDDPRWKIVYENAKPMHFAFLG 67 Query: 69 PRSRRAVAGHLRASGDQSQRRFPFISMSAFDIEDPVAFVSNSPLILSRLWSRLESLTQSV 128 RS+ A+AGH+ AS DQS RRFPF++ +A ++E P+ F+++SPL +RLWSR+ + + + Sbjct: 68 SRSKLAIAGHMVASHDQSSRRFPFLAAAALEVEKPLTFLAHSPLAFARLWSRVSAQMKPL 127 Query: 129 LTAPDPAQPLQTLASTTLELDINSAG---YTAAFADFLDLQTTGSLQQMLAEAGFTGNLR 185 L A +PA LQ L T + ++I + F DF++ QT L+QML +G LR Sbjct: 128 LGASEPAGALQALGETQVPIEIGGGPGNPHDGTFNDFVEHQTLAGLEQMLLASGHPVRLR 187 Query: 186 QLLLALGLLLQPVMASTSSRLDKNLILPLPRDPMYRSLVASFWMHLITPFLTRADFELAL 245 +LALG LL+PVM S SS L++ L LPLP DP YRSLVA+FW+ LI PF+ +ADFELA+ Sbjct: 188 GAMLALGSLLRPVMQSGSSHLERGLTLPLPNDPFYRSLVAAFWLELIAPFVAQADFELAI 247 Query: 246 FLTQLDDQPAMFLGFSGASPRTLHSVMDIQAGAEHNIPFDDADWVEEHVGSDYGIQKLSS 305 F+ + ++ + +GF+GAS +TLHSV+D QA A HNI DD +W++EH +D+GI KL S Sbjct: 248 FIGTIAERERLIIGFNGASAKTLHSVVDPQAYAAHNIDIDDPEWIDEHARNDHGISKLVS 307 Query: 306 YLAHPDLSLTSALASFREAFIGA 328 YL P LSL ++ +FREAF GA Sbjct: 308 YLDQPQLSLRVSIDTFREAFTGA 330