BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5200.p (581 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774186.1| hypothetical protein Hsero_0759 [Herbaspiril... 464 e-128 ref|ZP_07677454.1| conserved hypothetical protein [Ralstonia sp.... 122 2e-25 ref|YP_002007695.1| hypothetical protein RALTA_B1030 [Cupriavidu... 121 3e-25 emb|CAQ36669.1| hypothetical protein RSMK02775 [Ralstonia solana... 121 5e-25 ref|YP_003749668.1| hypothetical protein RPSI07_mp0688 [Ralstoni... 117 6e-24 >ref|YP_003774186.1| hypothetical protein Hsero_0759 [Herbaspirillum seropedicae SmR1] gb|ADJ62278.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 508 Score = 464 bits (1195), Expect = e-128, Method: Composition-based stats. Identities = 272/484 (56%), Positives = 342/484 (70%), Gaps = 1/484 (0%) Query: 65 LMSTWIKRGLLTVAVFLVTWVMFITYWSGANHMPDGGDVILYLLVLPAVFLLLVWGVSKA 124 LM TWIKR L A+F VTWVMFI YWSG+NHMPD DVIL+LLVLP FLLLVWGV K Sbjct: 2 LMGTWIKRSLFVCAIFAVTWVMFIAYWSGSNHMPDISDVILFLLVLPVCFLLLVWGVRKL 61 Query: 125 RTGLAATAAAKAAEAPAAPQADTASAEPTQHPQRRWTLAIVATALRTPFGTDAASVVAQM 184 R LAA AAA+ A A P + + H +R WTL I A+ALR+P G DAA++++Q+ Sbjct: 62 RLSLAAAAAARQAAAAQTPAPEAPATP-AHHVERHWTLVIAASALRSPQGDDAATLLSQL 120 Query: 185 QAQALRLPLDGELTDAEDFPILAGRIAELDAEATRETFLAWQHQRIPNQPTLTEDADEAW 244 Q Q RL LD ELTD + FPILAGRI LD E + +LAW + P A Sbjct: 121 QKQDARLDLDPELTDRQGFPILAGRIGALDVEGAQSDYLAWLEAQSPEAAQAPTLATGHL 180 Query: 245 RSLALAADIARELGDRLHWHPLLEEYQDAPRHRQEEVGLPHLHLLVLLPPTWSGEQRMQA 304 R+LALAADI RELG RL HP L +Y +AP H++E VGLP +HLL LLP W G QR+QA Sbjct: 181 RTLALAADITRELGQRLLAHPFLTQYLEAPAHQREAVGLPQVHLLALLPARWEGAQRLQA 240 Query: 305 ARWLGEQVCQQGWPPEKLNVLPAAAGENAHPLLHLDRLVATSRDPRTQQPSPYLASSYLA 364 A+WLG+ + Q+GWP EK+ VLP AGE+ HP+LHLDRL+ATSRD +QP+ L S YLA Sbjct: 241 AQWLGDLLAQEGWPREKITVLPVIAGESVHPMLHLDRLIATSRDVNAKQPTSQLTSPYLA 300 Query: 365 MVIAAQSNLDPEIVQAWQQDKQLLQGAQSIGKSPAEAAAGLILADTTQALAMGTADPVLL 424 + +AA+S+LD IV+ W+ +QLL + + GKSP E AAGLILAD TQA+A+G VLL Sbjct: 301 VAVAAESSLDDAIVEEWETQQQLLCSSANTGKSPGEGAAGLILADATQAIALGADTLVLL 360 Query: 425 HRASLGRHERSVDQARRVPGDLLIQLAQGALRDAAIVPDQLALLISDGDYRASRTDEIMK 484 HRA++GR ++S D R+ G+ L +L QGAL+DA + P + LL +D DYR SRT+EIMK Sbjct: 361 HRAAVGRKDKSADAPGRIEGEFLSRLVQGALQDAGVAPAAIGLLATDSDYRGSRTEEIMK 420 Query: 485 LGYAVLPELDLGSQCVKLGASCGSAGLATALSALVLAHAATDDSDQPSLCVCNEDAHQRA 544 +GY LPE+DLGSQCVKLGA CG+AG AT +SALVLAH+A++ Q +LCV N+ AH+RA Sbjct: 421 MGYDSLPEIDLGSQCVKLGAGCGAAGAATVMSALVLAHSASEALGQAALCVSNDHAHERA 480 Query: 545 VVAL 548 + + Sbjct: 481 AMVV 484 >ref|ZP_07677454.1| conserved hypothetical protein [Ralstonia sp. 5_7_47FAA] gb|EFP64187.1| conserved hypothetical protein [Ralstonia sp. 5_7_47FAA] Length = 494 Score = 122 bits (306), Expect = 2e-25, Method: Composition-based stats. Identities = 140/493 (28%), Positives = 212/493 (43%), Gaps = 71/493 (14%) Query: 94 ANHMPDGGDVILYLLVLPAVFLLLVWGVSKARTGLAATAAAKAAEAPAAPQADTASAEPT 153 AN MP D++ YLL+LP ++ W + +A G+ + A E AA A T + T Sbjct: 30 ANRMPTTADILTYLLLLPVGMIVGYWVIKRALDGIRSNVVA-GRELAAATPAATGTDAKT 88 Query: 154 QHPQ---RRWTLAIVATALRTPFGTDAASVVAQMQAQALRLPLDGELTDAEDF--PILAG 208 PQ R+W ++A+ALR P G DAAS V +QA LTD + F PI A Sbjct: 89 ADPQDATRQWRAVLLASALRAPAGGDAASGVEAVQANT-----QPGLTDVQGFGQPIFAA 143 Query: 209 RIAELDAEATRETFLAWQHQRIPNQPTLTEDADEAWRSLALAADIARELGDRLHWHPLLE 268 ++ +D E R LA QH + + DE R+L+LA +A EL H Sbjct: 144 QVEGIDIEDLRAE-LAEQHPDV-------DWLDERLRALSLAGQVAEELAAHAVAH---- 191 Query: 269 EYQDAPRHRQEEVGLPHLHLLVLLPPTWSGEQRMQAARWLGEQVCQQGWPPEKLNVLPAA 328 AP + E L + LLP W+ + + A WL ++ WP ++L + P Sbjct: 192 ----APETTEPET--TRLIITALLPREWTPQHQAAADGWLRRRIALI-WPADRLTLEPIT 244 Query: 329 AGENAHPLLHLDRLVATSRDPRTQQPSPYLASSYLAMVIAAQSNLDPEIVQAWQQDKQLL 388 A +A LL LDR TQ + L MV+ A S + P V+ Q +QL Sbjct: 245 AKGDADALLLLDR--------ATQSVNRASDERVLRMVVVADSLVGPSAVEQLMQHEQLF 296 Query: 389 QGAQSIGKSPAEAAAGLIL-----------------ADTTQALAMGTADPVLLHRASLGR 431 + + G+ P EAAAG++L A T+A + A L + R Sbjct: 297 EANRQHGRVPGEAAAGVLLCAPAMAQSLLPPALDGDAAATEAFTITRAGVARLESPTPDR 356 Query: 432 HERSVDQARRVPGDLLIQLAQGALR----------------DAAIVPDQLALLISDGDYR 475 + + G +L LA ++ D+ P +A ++SD Sbjct: 357 GQPQLQALGDAVGHVLDTLAAAPVKAKQDAAPAEKAETAEGDSPAEPITVAGVVSDTGMH 416 Query: 476 ASRTDEIMKLGYAVLPELDLGSQCVKLGASCGSAGLATALSALVLAHAATDDSDQPSLCV 535 RT E+ ++ P LDL + + +G CG G A L ++V+AH + + +P L + Sbjct: 417 PVRTVEVARVFSERFPALDLAADLLPVGTPCGYVGAAGPLLSVVVAHQLSQQTGKPVLAI 476 Query: 536 CNEDAHQRAVVAL 548 D QR +A+ Sbjct: 477 TANDIQQRGAIAV 489 >ref|YP_002007695.1| hypothetical protein RALTA_B1030 [Cupriavidus taiwanensis LMG 19424] emb|CAQ71638.1| conserved hypothetical protein, putative TRANSMEMBRANE PROTEIN [Cupriavidus taiwanensis LMG 19424] Length = 495 Score = 121 bits (304), Expect = 3e-25, Method: Composition-based stats. Identities = 152/521 (29%), Positives = 223/521 (42%), Gaps = 76/521 (14%) Query: 70 IKRGLLTVAVFLVTWVMFITYWSGANHMPDGGDVILYLLVLPA----VFLLLVWGVSKAR 125 IK L+ AVF V WV I +W N MP D++ +L+++PA ++++ + R Sbjct: 6 IKSTLILFAVFAVVWVATIAWWQSINRMPTTTDIVTHLVLMPAGMVAAYVVIKRALDGIR 65 Query: 126 TGLAATA--AAKAAEAPAAPQADTASAEPTQHPQRRWTLAIVATALRTPFGT--DAASVV 181 T +AAT+ A AA A A+ A AEP P R W A++ATA+RTP G DA + Sbjct: 66 TNVAATSHAPATAAPGGAGNAAEGAQAEPND-PTRTWRAALLATAVRTPAGNAPDALAEA 124 Query: 182 AQMQAQALRLPLDGELTDAEDFPILAGRIAELDAEATRETF------LAWQHQRIPNQPT 235 A+ + + LDG P+ A +I LD E+ R F L W + + Sbjct: 125 AKAGNRPGLVTLDGLPA-----PVFAAQIESLDIESLRTEFGARTPDLVWDDEALRALAL 179 Query: 236 LTEDADEAWRSLALAADIARELGDRLHWHPLLEEYQDAPRHRQEEVGLPHLHLLVLLPPT 295 E +DE LA+ A + G H + P L +LLP Sbjct: 180 AAEVSDE----LAMQATVYAPAG-----HDMAVPDSTVP-----------LVATLLLPRG 219 Query: 296 WSGEQRMQAARWLGEQVCQQGWPPEKLNVLPAAAGENAHPLLHLDRLVATSRDPRTQQPS 355 W + A WL E++ Q WP +L + AA + LL LDR P QP+ Sbjct: 220 WPEPLQAAAGDWLRERLSQY-WPAARLTLEATAARGDGDALLLLDRATQAVNRPVDGQPA 278 Query: 356 PYLASSYLAMVIAAQSNLDPEIVQAWQQDKQLLQGAQSIGKSPAEAAAGLILADTTQALA 415 L M++AA S + V+A +Q+ QL G++P EAAAG++L A A Sbjct: 279 -------LRMLVAADSLIGANAVEALEQEDQLFSARCPHGRTPGEAAAGVLLGAHQPAAA 331 Query: 416 MGTAD----------PVLLHRASLGRHERSVDQARRVPGDLLIQLAQGALRDAAIV---- 461 D P+L+ R ++ R E + + L Q AL A Sbjct: 332 ETGTDRDADAQAESAPILVTRTAMARLEAPTADRGQPQLEALAQAVTQALETIAGKAEAA 391 Query: 462 --------------PDQLALLISDGDYRASRTDEIMKLGYAVLPELDLGSQCVKLGASCG 507 P +A +++D RT EI ++ P+LD + + LG CG Sbjct: 392 PEAAADTAAQSEAGPSAVAAIVTDTGVHPVRTVEIAQVVSTRFPKLDPVADLLALGLPCG 451 Query: 508 SAGLATALSALVLAHAATDDSDQPSLCVCNEDAHQRAVVAL 548 AG A AL +V+AH D +P L + DA QR +A+ Sbjct: 452 YAGAAGALLPVVVAHQLALDGGRPVLALSAGDAQQRGAIAI 492 >emb|CAQ36669.1| hypothetical protein RSMK02775 [Ralstonia solanacearum MolK2] Length = 498 Score = 121 bits (303), Expect = 5e-25, Method: Composition-based stats. Identities = 137/525 (26%), Positives = 216/525 (41%), Gaps = 72/525 (13%) Query: 65 LMSTWIKRGLLTVAVFLVTWVMFITYWSGANHMPDGGDVILYLLVLPAVFLLLVWGVSKA 124 L + + GL +AVF V W+ I +W G N MP D++ L +LP ++ + +A Sbjct: 2 LANRLFRSGLTLLAVFAVVWIATIAWWQGINRMPTTADIVTCLFLLPLGMVIGYRVIKRA 61 Query: 125 RTGLAATAAAKAAEAPAAPQA---DTASAEPTQHPQRRWTLAIVATALRTPFGTDAASVV 181 G+ AA A AA TA+A Q R W ++ +ALR+ G DA ++ Sbjct: 62 LDGIRTNVAAGRGRAAAAAPVAADSTAAAVDPQDASRHWRAVLLGSALRSTAGADADGLI 121 Query: 182 AQMQAQALRLPLDGELTDAEDF--PILAGRIAELDAEATRETFLAWQHQRIPNQPTLTED 239 Q + +TD + F PI A + L+ + R+ + QR P + Sbjct: 122 EATQTYS-----QPAMTDVQGFGSPIFAAPVEGLNIDDLRDKLV----QRHPG----LDW 168 Query: 240 ADEAWRSLALAADIARELGDRLHWHPLLEEYQDAPRHRQEEVGLPHLHLLVLLPPTWSGE 299 +E+ R+L L AD+ +L + + + R L + LLP W+ + Sbjct: 169 TNESLRALTLCADVVDDLAAQAAASQQAQAGAEPVR----------LVVTALLPRDWTPQ 218 Query: 300 QRMQAARWLGEQVCQQGWPPEKLNVLPAAAGENAHPLLHLDRLVATSRDPRTQQPSPYLA 359 Q+ A WL +Q+ + WP +++ + P AA +A LL LDR P ++ Sbjct: 219 QQAAADDWLRQQI-RPHWPADRVTLEPIAAKGDADALLLLDRATLALNRPSEERT----- 272 Query: 360 SSYLAMVIAAQSNLDPEIVQAWQQDKQLLQGAQSI-GKSPAEAAAGLILADTTQALAMGT 418 L MV+ A S + V+ Q QL G Q+ G+ P EAAAG++L L GT Sbjct: 273 ---LRMVVVADSLIGTHAVEQLTQQSQLYDGDQNKHGRLPGEAAAGVLLCSPADPLTQGT 329 Query: 419 -----------ADPVLLHRASLGRHERSVDQARRVPGDLLIQLAQGALRDAAIVPD---- 463 A P++L RAS+ R L + L A P+ Sbjct: 330 QASAPVDDEAPAAPLILTRASVARLSTPTTDRGHPDTAALGGAVRQVLETLAATPNAAND 389 Query: 464 -------------------QLALLISDGDYRASRTDEIMKLGYAVLPELDLGSQCVKLGA 504 + +++D RT E+ ++ LP LD + LG Sbjct: 390 SAKDKPADDAAPASPPPIADIVAIVADTGMHPVRTTEVARVVAERLPALDSAEDVLSLGC 449 Query: 505 SCGSAGLATALSALVLAHAATDDSDQPSLCVCNEDAHQRAVVALS 549 CG G A AL + LAH + + +P L + D QR +A++ Sbjct: 450 PCGYLGAAGALLPVALAHQLSLQTGRPVLALTANDVQQRGAIAVA 494 >ref|YP_003749668.1| hypothetical protein RPSI07_mp0688 [Ralstonia solanacearum PSI07] emb|CBJ35036.1| conserved transmembrane protein of unknown function [Ralstonia solanacearum PSI07] Length = 485 Score = 117 bits (293), Expect = 6e-24, Method: Composition-based stats. Identities = 137/509 (26%), Positives = 209/509 (41%), Gaps = 69/509 (13%) Query: 77 VAVFLVTWVMFITYWSGANHMPDGGDVILYLLVLPAVFLLLVWGVSKARTGLAATAAAK- 135 +AVF V W+ I +W N MP D++ L +LP +L + +A G+ A AA Sbjct: 4 LAVFAVVWIATIAWWQAVNRMPTTTDIVTCLFLLPLGMVLGYRVIKRALDGIRANVAAGR 63 Query: 136 --AAEAPAAPQADTASAEPTQHPQRRWTLAIVATALRTPFGTDAASVVAQMQAQALRLPL 193 A A + +A Q R W ++ +A RT G DA ++V Q Sbjct: 64 GLATAAAPVAADNAVAAADPQDTTRHWRATLLGSAFRTAVGADADALVKAAQTYT----- 118 Query: 194 DGELTDAEDF--PILAGRIAELDAEATRETFLAWQHQRIPNQPTLTEDADEAWRSLALAA 251 ++TD + F PI A +A+LD E R A P L + E+ R+LAL + Sbjct: 119 QPDMTDVQGFGSPIFAAPVADLDTEDLRNKLAA-------RHPGL-DWTRESLRALALCS 170 Query: 252 DIARELGDRLHWHPLLEEYQDAPRHRQEEVGLPHLHLLVLLPPTWSGEQRMQAARWLGEQ 311 D+ +L + + + R L + LLP + +Q+ A WL +Q Sbjct: 171 DMVEKLAAQAAASQPAKAGAEPAR----------LVVTALLPRDCTPQQQSAADDWLRQQ 220 Query: 312 VCQQGWPPEKLNVLPAAAGENAHPLLHLDRLVATSRDPRTQQPSPYLASSYLAMVIAAQS 371 + + WP E++ + P AA +A LL LDR P ++ L MV+ A S Sbjct: 221 I-RPHWPAERVTLEPIAAKGDADALLLLDRATQALNRPSAERT--------LRMVVVADS 271 Query: 372 NLDPEIVQAWQQDKQLLQGAQSI-GKSPAEAAAGLILADTTQALAMGT-----------A 419 + V+ Q QL Q+ G+ P EAAAG++L LA GT A Sbjct: 272 LIGARAVEQLTQQSQLYDADQNKHGRLPGEAAAGVLLGSPADPLAQGTQASAPADGEAPA 331 Query: 420 DPVLLHRASLGRHERSVDQARRVPGDLLIQLAQGALRDAAIVPDQ--------------- 464 P++L RA + R + L + + L A PD Sbjct: 332 APLVLTRAGVARLSAPTADRGHPDTEALGGVVRQVLEALAAKPDGANDNNKSKPADDAAS 391 Query: 465 -----LALLISDGDYRASRTDEIMKLGYAVLPELDLGSQCVKLGASCGSAGLATALSALV 519 +A +++D RT EI ++ LP LD + LG CG G A AL + Sbjct: 392 AAPSLIAAVVADTGVHPVRTAEIARVVAERLPALDSAEDVLSLGRPCGYLGAAGALLPVA 451 Query: 520 LAHAATDDSDQPSLCVCNEDAHQRAVVAL 548 +AH + + +P L + D QR +A+ Sbjct: 452 VAHQLSQQTGRPVLALTANDVQQRGAIAV 480