BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5198.p (263 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777405.1| peptidase M15B and M15C, D,D-carboxypeptidas... 469 e-130 ref|YP_003774188.1| transmembrane protein [Herbaspirillum serope... 416 e-114 ref|YP_004750719.1| peptidase M15B and M15C, D,D-carboxypeptidas... 296 2e-78 ref|YP_443459.1| hypothetical protein BTH_I2952 [Burkholderia th... 270 2e-70 ref|YP_104338.1| hypothetical protein BMA2824 [Burkholderia mall... 269 3e-70 >ref|YP_003777405.1| peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysins protein [Herbaspirillum seropedicae SmR1] gb|ADJ65497.1| peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysins protein [Herbaspirillum seropedicae SmR1] Length = 279 Score = 469 bits (1206), Expect = e-130, Method: Composition-based stats. Identities = 225/263 (85%), Positives = 243/263 (92%) Query: 1 MWLLLFPSGRVLTLRFLHARLAGLRSRWERWNRRGDEVIAGTTSSVRSSLTASVDYVRNN 60 MWLLLFPSGR TLRFL R + LR+RWER+N RGD++IA TS++RSSLT+ ++YVR N Sbjct: 17 MWLLLFPSGRAQTLRFLQTRCSRLRNRWERYNDRGDQMIAEVTSNIRSSLTSRLNYVRKN 76 Query: 61 YVIVSTIAVLLIGPAIVAFLLSGKSMLQGFDDTQRVTNSQIAELLKGEQLVPPPPLPPDM 120 Y+++S I LLIGPAIVA LL+GKSMLQGFDDTQR TNSQIAELLKGEQLV PPPLPPDM Sbjct: 77 YLVLSIIVALLIGPAIVALLLAGKSMLQGFDDTQRATNSQIAELLKGEQLVAPPPLPPDM 136 Query: 121 FTTAEVIQVRPMLVNASRNWQLLNPEYAQRLLLVFKIMKEKHGYEMALIEGYRSPERQNM 180 FTTAEV+QVRPMLV+ASRNWQLLNPEYAQRLLLVFKIMKEKHGYEMALIEGYRSP+RQNM Sbjct: 137 FTTAEVVQVRPMLVDASRNWQLLNPEYAQRLLLVFKIMKEKHGYEMALIEGYRSPQRQNM 196 Query: 181 LAGMGSNVTNAAAFQSYHQYGLAGDCAFVRNGKLVISEKDPWAMEGYRLYGEVAESVGLT 240 LAGMG +TNAAAFQSYHQYGLAGDCAFVRNGKLVISEKDPWAM GYRLYGEVAESVGLT Sbjct: 197 LAGMGGGITNAAAFQSYHQYGLAGDCAFVRNGKLVISEKDPWAMAGYRLYGEVAESVGLT 256 Query: 241 WGGRWKLMDFGHTEYRMPGVMKK 263 WGGRWKLMDFGHTEYRMPGVMKK Sbjct: 257 WGGRWKLMDFGHTEYRMPGVMKK 279 >ref|YP_003774188.1| transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ62280.1| transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 279 Score = 416 bits (1070), Expect = e-114, Method: Composition-based stats. Identities = 220/263 (83%), Positives = 239/263 (90%) Query: 1 MWLLLFPSGRVLTLRFLHARLAGLRSRWERWNRRGDEVIAGTTSSVRSSLTASVDYVRNN 60 MWLLLFPSGR LTL FL++R+A LR RW+RWNR+GD V+AGT S +R S +AS+ YVR N Sbjct: 17 MWLLLFPSGRELTLAFLNSRMASLRQRWDRWNRKGDAVLAGTASGIRHSFSASIGYVRGN 76 Query: 61 YVIVSTIAVLLIGPAIVAFLLSGKSMLQGFDDTQRVTNSQIAELLKGEQLVPPPPLPPDM 120 YVIV + +LLIGPAI+AF+LSGKSML GF+ RV N+QIAELLKGE LVPPPPLPPDM Sbjct: 77 YVIVGLVLLLLIGPAILAFMLSGKSMLGGFEPADRVANAQIAELLKGELLVPPPPLPPDM 136 Query: 121 FTTAEVIQVRPMLVNASRNWQLLNPEYAQRLLLVFKIMKEKHGYEMALIEGYRSPERQNM 180 FTTAEV+QVRPMLV+ASRNWQLLNPEYAQRLLLVFKIMKEK+G EMALIEGYRSPERQNM Sbjct: 137 FTTAEVVQVRPMLVDASRNWQLLNPEYAQRLLLVFKIMKEKYGIEMALIEGYRSPERQNM 196 Query: 181 LAGMGSNVTNAAAFQSYHQYGLAGDCAFVRNGKLVISEKDPWAMEGYRLYGEVAESVGLT 240 LAGMG NVTNAAAFQSYHQYGLAGDCAFVRNGKLVISEKDPWAME YR YGEVAESVGLT Sbjct: 197 LAGMGGNVTNAAAFQSYHQYGLAGDCAFVRNGKLVISEKDPWAMEAYRHYGEVAESVGLT 256 Query: 241 WGGRWKLMDFGHTEYRMPGVMKK 263 WGGRWKLMDFGHTEYR+PGVMKK Sbjct: 257 WGGRWKLMDFGHTEYRLPGVMKK 279 >ref|YP_004750719.1| peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysin [Collimonas fungivorans Ter331] gb|AEK59896.1| peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysin [Collimonas fungivorans Ter331] Length = 279 Score = 296 bits (758), Expect = 2e-78, Method: Composition-based stats. Identities = 155/262 (59%), Positives = 204/262 (77%), Gaps = 2/262 (0%) Query: 3 LLLFPSGRVLTLRFLHARLAGLRSRWERWNRRGDEVIAGTTSSVRSSLTASVDYVRNN-Y 61 LLLFP+ R + L R + ++ + W R + + ++++S +S +++ + + Sbjct: 19 LLLFPAAREIVYSALIKRRQQMGAQVQNWRDRRSQTTRSLSQNLQASRLSSWQFIKQHQW 78 Query: 62 VIVSTIAVLLIGPAIVAFLLSGKSMLQGFDDTQRVTNSQIAELLKGEQLVPPPPLPPDMF 121 ++++ +AV+LI P ++A+LLSGK+ML +DD+ +V N QIA LL+GEQLVPPPPLPP++F Sbjct: 79 ILLAGMAVVLI-PPLIAWLLSGKTMLGSYDDSGQVVNQQIAALLEGEQLVPPPPLPPEVF 137 Query: 122 TTAEVIQVRPMLVNASRNWQLLNPEYAQRLLLVFKIMKEKHGYEMALIEGYRSPERQNML 181 TT EV QVRPML ASRNWQ L+ ++ QRLL+ FKIMKEK+GY+M +IEGYRSPERQN L Sbjct: 138 TTQEVAQVRPMLDTASRNWQALDADFTQRLLMTFKIMKEKYGYDMVIIEGYRSPERQNAL 197 Query: 182 AGMGSNVTNAAAFQSYHQYGLAGDCAFVRNGKLVISEKDPWAMEGYRLYGEVAESVGLTW 241 A MG +VTNA AFQSYHQYGLA D AF+R+GKLVI+EKDPWAM GY+LYGEVAESVGLTW Sbjct: 198 AQMGGSVTNAKAFQSYHQYGLAADSAFMRSGKLVITEKDPWAMRGYQLYGEVAESVGLTW 257 Query: 242 GGRWKLMDFGHTEYRMPGVMKK 263 GGRWK+MD GH E+R PGVMK+ Sbjct: 258 GGRWKMMDLGHVEFRKPGVMKR 279 >ref|YP_443459.1| hypothetical protein BTH_I2952 [Burkholderia thailandensis E264] ref|ZP_02375892.1| hypothetical protein BthaT_33038 [Burkholderia thailandensis TXDOH] ref|ZP_02389922.1| hypothetical protein BthaB_33611 [Burkholderia thailandensis Bt4] gb|ABC39488.1| conserved hypothetical protein [Burkholderia thailandensis E264] Length = 321 Score = 270 bits (689), Expect = 2e-70, Method: Composition-based stats. Identities = 139/223 (62%), Positives = 173/223 (77%), Gaps = 1/223 (0%) Query: 37 EVIAGTTSSVRSSLTASVDYVRNNYVIVSTIAVLLIGPAIVAFLLSGKSMLQGFDDTQRV 96 E +A + RS+L+ + + ++++T +L P ++A L G+ + Q +DDT RV Sbjct: 91 EHLAQSAKMSRSTLSGMQNLLVRRRLLIATTTGILATPPLIAIALRGRQLFQ-YDDTLRV 149 Query: 97 TNSQIAELLKGEQLVPPPPLPPDMFTTAEVIQVRPMLVNASRNWQLLNPEYAQRLLLVFK 156 + +IA LLKGEQLVPP PLPP++F T EV QVRP L +ASR+W LL+ ++ RLLLV+K Sbjct: 150 PDEKIAALLKGEQLVPPLPLPPEVFATREVEQVRPALKDASRDWNLLDTDFRTRLLLVYK 209 Query: 157 IMKEKHGYEMALIEGYRSPERQNMLAGMGSNVTNAAAFQSYHQYGLAGDCAFVRNGKLVI 216 IM+E+HGYEMAL+EGYRSPERQN LA MGSNVTNAAAFQSYHQYGLA D AF+R+GKLVI Sbjct: 210 IMREQHGYEMALLEGYRSPERQNRLAQMGSNVTNAAAFQSYHQYGLAADNAFLRDGKLVI 269 Query: 217 SEKDPWAMEGYRLYGEVAESVGLTWGGRWKLMDFGHTEYRMPG 259 SEKDPWAM GY+LYG+VAE VGLTWGGRWK+MD GH EY PG Sbjct: 270 SEKDPWAMRGYQLYGQVAEEVGLTWGGRWKMMDLGHVEYHKPG 312 >ref|YP_104338.1| hypothetical protein BMA2824 [Burkholderia mallei ATCC 23344] ref|YP_334995.1| hypothetical protein BURPS1710b_3630 [Burkholderia pseudomallei 1710b] ref|YP_001060628.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei 668] ref|YP_001067878.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei 1106a] ref|ZP_01770004.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei 305] ref|ZP_02404676.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei DM98] ref|ZP_02413183.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei 14] ref|ZP_02449304.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei 91] ref|ZP_02457499.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei 9] ref|ZP_02473022.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei B7210] ref|ZP_02483504.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei 7894] ref|ZP_02495881.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei NCTC 13177] ref|ZP_02499841.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei 112] ref|ZP_02507802.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei BCC215] ref|ZP_03456273.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia pseudomallei 576] ref|ZP_03793699.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei Pakistan 9] ref|YP_002898464.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei MSHR346] ref|ZP_04815981.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei 1106b] ref|ZP_04952812.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei 1710a] gb|AAU47982.1| conserved hypothetical protein [Burkholderia mallei ATCC 23344] gb|ABA49989.1| conserved hypothetical protein [Burkholderia pseudomallei 1710b] gb|ABN81735.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia pseudomallei 668] gb|ABN89599.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei 1106a] gb|EBA45591.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei 305] gb|EEC32257.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia pseudomallei 576] gb|EEH25664.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei Pakistan 9] gb|ACQ99058.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei MSHR346] gb|EES26606.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei 1106b] gb|EET09831.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia pseudomallei 1710a] Length = 321 Score = 269 bits (688), Expect = 3e-70, Method: Composition-based stats. Identities = 139/223 (62%), Positives = 173/223 (77%), Gaps = 1/223 (0%) Query: 37 EVIAGTTSSVRSSLTASVDYVRNNYVIVSTIAVLLIGPAIVAFLLSGKSMLQGFDDTQRV 96 E +A + RS+L+ + + ++++T +L P ++A L G+ + Q +DDT RV Sbjct: 91 EHLAQSARMSRSTLSGVQNLLVRRRLLIATTTGILATPPLIAIALRGRQLFQ-YDDTLRV 149 Query: 97 TNSQIAELLKGEQLVPPPPLPPDMFTTAEVIQVRPMLVNASRNWQLLNPEYAQRLLLVFK 156 + +IA LLKGEQLVPP PLPP++F T EV QVRP L +ASR+W LL+ ++ RLLLV+K Sbjct: 150 PDEKIAALLKGEQLVPPLPLPPEVFATREVEQVRPALKDASRDWNLLDTDFRTRLLLVYK 209 Query: 157 IMKEKHGYEMALIEGYRSPERQNMLAGMGSNVTNAAAFQSYHQYGLAGDCAFVRNGKLVI 216 IM+E+HGYEMAL+EGYRSPERQN LA MGSNVTNAAAFQSYHQYGLA D AF+R+GKLVI Sbjct: 210 IMREQHGYEMALLEGYRSPERQNRLAQMGSNVTNAAAFQSYHQYGLAADNAFLRDGKLVI 269 Query: 217 SEKDPWAMEGYRLYGEVAESVGLTWGGRWKLMDFGHTEYRMPG 259 SEKDPWAM GY+LYG+VAE VGLTWGGRWK+MD GH EY PG Sbjct: 270 SEKDPWAMRGYQLYGQVAEEVGLTWGGRWKMMDLGHVEYHKPG 312